#### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCC-TTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAATCCCTTTGGCCTGGTACTTATCATTGCACCAT-GAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAggtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAATCCCTTTGGCCTGGTACTTATCATTGCACCA-TGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAggtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAATCCCTTTGGCCTGGTACTTATCATTGCACCATGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAATCCCTTTGGCCTGGTACTTATCATTGCA-CCATGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAATCCCTTTGGCCTGGTACTTATCATTGCACCAT-GAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAATCCCTTTGGCCTGGTACTTATCATTGCACCATGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCC---CTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAA--TCCCTTTGGCCTGGTACTTATCATTGCACCATG-AATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtcttactcctgcaaaactttgtgattttatttatttatttattttagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAATCCCTTTGGCCTGGTACTTATCATTGCACCATGAATTCTCATGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtatagggtgtttcaagtcacaagcccgaccatctctatcttactatctg #### 2010012O05Rik_ID10003_2 --> 0 - 0 Original Alignment CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATG-TATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from CESAR CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGAT-GTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Spaln_aa2Genome CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGcGCAGCTCGAAACATGGTACTACAGGAAGATGT-ATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Spaln_nt2Genome CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATG-TATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Pairagon CTGCTGGGGCAG-GCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATG-TATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Exonerate_protein2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATGTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Exonerate_coding2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGCGCAGCTCGAAACATGGTACTACAGGAAGATGTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from GeneWise accatatagaggcgggatcataatagcttcctcccttctgttcctcccagctgctggggcagcgcagctcgaaacatggtactacaggaagatgtattttgcgttcagaagatgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGCCAGAAC-ACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGAACCACTATCCTGGAATATGTAATGATCAACAGCA-ATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from CESAR GTCACAGATAATATCAGCCAGAAC-ACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGAACCACTATCCTGGAATATGTAATGATCAACAGC-AATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Spaln_aa2Genome GTCACAGATAATATCAGCCAGAAC-ACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGAACcACTATCCTGGAATATGTAATGATCAACAGCAA-TTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Spaln_nt2Genome GTCACAGATAATATCAGCCAGAA-CACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGAACCACTATCCTGGAATATGTAATGATCAACAGCA-ATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Pairagon GTCACAGATAATATCAGCCAGAA-CACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGAACCACTATCCTGGAATATGTAATGATCAACAGCA-ATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGAACCACTATCCTGGAATATGTAATGATCAACAGCAATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Exonerate_coding2genome GTCACAGATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATATCAGCCAGAACCACTATCCTGGAATATGTAATGATCAACAGCAATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from GeneWise ctgacttatactagaaataaactaggagccactgtgtcttccttctccaggtcacagataatatcagccagaaccactatcctggaatatgtaatgatcaacagcaatttgaagccattttacaggtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagaaTCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCA-CCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAagtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagaaTCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCCAGCAGAGATGATAGTGCTTTTAGATTCTCAA-GGCACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAagtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCC-AGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGC-ACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACC---TGAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGC-ACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACC---TGAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCACCCATCTCTGCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAA-GCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTTAGAGGACTTGCAGAAAATTGGGA-GGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from CESAR TGTGTAAAGGAA-GCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTTAGAGGACTTGCAGAAAATTGGGA-GGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Spaln_aa2Genome GAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagtgcgtaaaagAGCGCCATTTTAGAGGACTTGCAGAAAATTGGGAG-GAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Spaln_nt2Genome TGTGTAAAGGAA-GCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTTAGAGGACTTGCAGAAAATTGGG-AGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Pairagon TGTGTAAAGGAA-GCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTTAGAGGACTTGCAGAAAATTGGG-AGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTTAGAGGACTTGCAGAAAATTGGGAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTTAGAGGACTTGCAGAAAATTGGGAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGCGCCATTTTAGAGGACTTGCAGAAAATTGGGAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga #### Actn3_ID691_19 --> 0 - 0 Original Alignment GACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTC-CATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from CESAR GACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaaaggacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGCATGATGGAGCCCGACGACTTCCGAGCTTGT-CCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Spaln_aa2Genome GACCGG AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACgGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCC-ATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Spaln_nt2Genome GACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTC-CATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Pairagon GACCGG AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTC-CATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Exonerate_protein2genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Exonerate_coding2genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from GeneWise GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTG-CGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACA-CGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTG-CGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAAC-ACGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTG-CGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGcCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACAC-GACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTG-CGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACA-CGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTG-CGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACA-CGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTG-CGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAAC--ATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACAC---GACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTG-CGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAAC--ATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACAC---GACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACACGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCTAC-TCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCTA-CTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCTACTCCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCTACTCCCAAA-TCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGG-CATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCTACTCCCAAA-TCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTA--CGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCTACT---CCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTA--CGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCTACT---CCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATC-CTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctaggtgcaaaaggggataatggtactgtctgtgtccttccacagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCCGATCGAGAGCGAGGTGCCGTCCCAGGCCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGCTACT-CCCAAATCCGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACTgtgggcaacctgggttttactaaatgagaattctgttgtaacaagattgg #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTG-CACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACCAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGA-CAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTG-CACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACCAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAG-ACAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACCAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGACAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGC-ACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACCAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGA-CAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTG-CACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACCAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGA-CAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACCAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGACAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTATGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACCAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGACAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAA-GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagagGCTGCATCCAAACAGCGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCA-TGTCAATGTACAGAACTTCCATACTaggtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from CESAR agACCTCAGCCAAAGAA-GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagagGCTGCATCCAAACAGCGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGC-ATGTCAATGTACAGAACTTCCATACTaggtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Spaln_aa2Genome CCAAAGAA----- -GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG TGCAAAATGCATAgttgggccagatcattcacctcccactttcctctcagaggctgcatccaaacagCGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAT-GTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAA-GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGCGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGC-ATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Pairagon AGACCTCAGCCAAAGAA-GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGCGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGC-ATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAA-GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC--AATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGCGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAT---GTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAA-GGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC--AATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGCGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAT---GTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from GeneWise CCAAAGAAGGC-- ----TTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG TGCAAAATGCATAgttgggccagatcattcacctcccactttcctctcagaggctgcatccaaacagCGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAT-GTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAAC-CTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagaaATAGTTGACGGGAACCCTGAAGATGACCCTTGGCATGATTTGGACAATCATCC-CCGTTTTGCCATTCAGGACATCTCTGTAGAAggtaagctgatgcaaaatgcatagttgggccagatcattacctctccactc Alignment from CESAR aaATTGTTGACGGGAAC-CTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagaaATAGTTGACGGGAACCCTGAAGATGACCCTTGGCATGATTTGGACAATCATC-CCCGTTTTGCCATTCAGGACATCTCTGTAGAAggtaagctgatgcaaaatgcatagttgggccagatcattcacctcccactt Alignment from Spaln_aa2Genome AAATTGTTGACGGGAAC-CTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACcCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCC-CGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattacctctccactc Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACC-TGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCCTGAAGATGACCCTTGGCATGATTTGGACAATCATCC-CCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattacctctccactc Alignment from Pairagon AAATTGTTGACGGGAA-CCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCCTGAAGATGACCCTTGGCATGATTTGGACAATCATCC-CCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattacctctccactc Alignment from Exonerate_protein2genome AAATTGTTGACGGGAAC-CTGAAGATGACCCTGGGCATGATCTGGACCATCATC--CTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCC---CGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattacctctccactc Alignment from Exonerate_coding2genome AAATTGTTGACGGGAA---CCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGG--AACCCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCC-CGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattacctctccactc Alignment from GeneWise AAATTGTTGACGGGAAC-CTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCC-CGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcattacctctccactc #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAA-GCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcaggtGCAAGACTGCCTAGGCCTGATAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAACCGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGC-GGTTGCGATTAGTGCTGAAggtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAA-GCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcaggtGCAAGACTGCCTAGGCCTGATAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAACCGCCCTAGACTTCATAGCTACCAAAGGTGTGAAG-CGGTTGCGATTAGTGCTGAAggtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAA-GCCCTAGACTTCATTGCCAGCAAAGGAGTTAAG---------CTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAACcGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCGGTTGCGATTAGTGCTGAAGGTAAGTGAGGgtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAA-GCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAACCGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGC-GGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAA-AGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGC---------TAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAACCGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCGGTTGCGATTA----------GTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAACCGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAACCGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tattcttcaactcatgaccttcaacatgcctcattgtctccttgctgcagGTGCAAGACTGCCTAGGCCTGATAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAACCGCCCTAGACTTCATAGCTACCAAAGGTGTGAAGCGGTTGCGATTAGTGCTGAAGgtaagtgagggtggttaaaggacaccagtggtggggaggcaagatgttac #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAG-GAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTGACCAGCGAGTTGTACCGCATATTCCCTCTTACCATTG-TGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTGGGTCAGGAGGAAggtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from CESAR TTACTGGACAGTGACCAG-GAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTGACCAGCGAGTTGTACCGCATATTCCCTCTTACCATT-GTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTGGGTCAGGAGGAAggtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTGACCAGCGAGTTGTACCGCATATTCCCTCTTACCATTGTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAG------------GCACAAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAG-GAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTGACCAGCGAGTTGTACCGCATATTCCCTCTTACCAT-TGTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCAC------------AAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Pairagon TTACTGGACAGTGACCAG-GAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTGACCAGCGAGTTGTACCGCATATTCCCTCTTACCAT-TGTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTT---TACCAGCAATGCTGAAACAGACCGTCTTGAGGCAC------------AAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTGACCAGCGAGTTGTACCGCATATTCCCTCTTACCATTGTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAG------------GCACAAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTGACCAGCGAGTTGTACCGCATATTCCCTCTTACCATTGTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAG------------GCACAAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTGACCAGCGAGTTGTACCGCATATTCCCTCTTACCATTGTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcaggGCTCAGGAGGTAAAACGAAAGTCCTTTCTTTCATTCTCTGGACTGGCAGA-GGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from CESAR gGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcaggGCTCAGGAGGTAAAACGAAAGTCCTTTCTTTCATTCTCTGGACTGGCAG-AGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Spaln_aa2Genome -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAACGAAAGTCCTTTCTTTCATTCTCTGGACTGGCAGAGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAACGAAAGTCCTTTCTTTCATTCTCTGGACTGGCAGA-GGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Pairagon GGCTCAGGAGGTAAAA-GAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAACGAAAGTCCTTTCTTTCATTCTCTGGACTGGCAGA-GGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Exonerate_protein2genome TCAGGAGGTAAAAGAAAGTCCTTTCTTTCGT atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagggctcaggaggtaaaacgaaagtcctttctttcattctctggactggcagaggcattcttacagaaggtatggatataatccatagGGAATGTGCGTTCTCTGGTGCCACTCTCTTC Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAACGAAAGTCCTTTCTTTCATTCTCTGGACTGGCAGAGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from GeneWise TCAGGAGGTAAAAGAAAGTCCTTTCTTTCGT atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagggctcaggaggtaaaacgaaagtcctttctttcattctctggactggcagaggcattcttacagaaggtatggatataatccatagGGAATGTGCGTTCTCTGGTGCCACTCTCTTC #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACCTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACC-GAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACCTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACC-GAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGA------CTAGGCTGTCTGGGCCGTGG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAAcCTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGAGGTCAGGCTGTCTGGGCCGTCAGGGGTAAgttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACCTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAA-CCGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACCTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACC-GAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACCTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGAGGTCAGGCTGTCTGGGCCgtcaggggtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAA-CTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACCTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGAGGTCAGGCTGTCTGGGCCgtcaggggtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACCTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCCTCCTAGATGTACATGGCCATGTGAGAATCTCCG-CTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGgtgtaagaacccacacattcacttcatggtctttcttaactttttaaggGGC Alignment from CESAR CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCCTCCTAGATGTACATGGCCATGTGAGAATCTCC-GCTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGgtgtaagaacccacacattcacttcatgttgtaccacatcactgacaggGGC Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagccagCTAACA---TTCCTCCTAGATGTACATGGCCATGTGAGAATCTCCGC-TTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcatggtctttcttaactttttaagGGGC Alignment from Spaln_nt2Genome CCAGCCAACATTC-TCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCCTCCTAGATGTACATGGCCATGTGAGAATCTCCG-CTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcatggtctttcttaactttttaagGGGC Alignment from Pairagon CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCCTCCTAGATGTACATGGCCATGTGAGAATCTCCG-CTTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcatggtctttcttaactttttaagGGGC Alignment from Exonerate_protein2genome CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATCTCG--GACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCCTCCTAGATGTACATGGCCATGTGAGAATCTCCGC---TTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcatggtctttcttaactttttaagGGGC Alignment from Exonerate_coding2genome CCAGCCAACATT-CTCCTGGATGAACATGGCCATGTGAGAATCTCG--GACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCCTCCTAGATGTACATGGCCATGTGAGAATCTCCGC---TTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcatggtctttcttaactttttaagGGGC Alignment from GeneWise -CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cctctccacaggcagccagcatgatgacgcccgctcttctctgccttcagCCAGCTAACATTCCTCCTAGATGTACATGGCCATGTGAGAATCTCCGC-TTCAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCTGGGGTgtaagaacccacacattcacttcatggtctttcttaactttttaagGGGC #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGA-AAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from CESAR CCCTTTTCAAAG-AATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGA-AAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGA-GCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAA-AGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Pairagon CCCTT-TTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAA-AAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Exonerate_coding2genome tattccattttgtttgtttatgttcataccatgtcccttccatttcttagcccttctcccaacaatgctgcagagcatgtgcaggcccaccttgtgaaaagcaggtccctccagatctgtttcaggtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAACAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCT-GCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGT-AAGAGTTACTGGTGCAggtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCT-GCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAG-TAAGAGTTACTGGTGCAggtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTG-CCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAG-TAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTT-CTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAG-TAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTG-CAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCAGT-CAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTG-CAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCAG-TCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCAGTCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTG-CAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCAGT-CAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTG-CAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCAGT-CAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCAGTCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCAGTCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCCAGATCACACCACTGCTACCCAATTATTGCCAGTCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATCCGG-AAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg gaccatattgcttggctatacacaaggaattatctttctactgtcttcagGCTACAAAGTTGGATGCCACATTCATCAGGCAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCCT-GAATTACCCCATTAACTTGACACTTGTGCCACTAGTGGGGGCTGTAGCTGCAggtaagtagtttttaaccttctggtaggcccccacatcagggtgactgctg Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGG-AAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg gaccatattgcttggctatacacaaggaattatctttctactgtcttcagGCTACAAAGTTGGATGCCACATTCATCAGGCAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCC-TGAATTACCCCATTAACTTGACACTTGTGCCACTAGTGGGGGCTGTAGCTGCAggtaagtagtttttaaccttctggtaggcccccacatcagggtgactgctg Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGG-AAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttggctatacacaaggaattatctttctactgtcttcagGCTACAAAGTTGGATGCCACATTCATCAGGcAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCCTG-AATTACCCCATTAACTTGACACTTGTGCCACTAGTGGGGGCTGTAGCTGCAGgtaagtagtttttaaccttctggtaggcccccacatcagggtgactgctg Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGG-AAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttggctatacacaaggaattatctttctactgtcttcagGCTACAAAGTTGGATGCCACATTCATCAGGCAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTG-CCCTGAATTACCCCATTAACTTGACACTTGTGCCACTAGTGGGGGCTGTAGCTGCAGgtaagtagtttttaaccttctggtaggcccccacatcagggtgactgctg Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGG-AAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttggctatacacaaggaattatctttctactgtcttcagGCTACAAAGTTGGATGCCACATTCATCAGGCAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCCT-GAATTACCCCATTAACTTGACACTTGTGCCACTAGTGGGGGCTGTAGCTGCAGgtaagtagtttttaaccttctggtaggcccccacatcagggtgactgctg Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGG-AAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCC--TGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttggctatacacaaggaattatctttctactgtcttcagGCTACAAAGTTGGATGCCACATTCATCAGGCAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCCTG---AATTACCCCATTAACTTGACACTTGTGCCACTAGTGGGGGCTGTAGCTGCAGgtaagtagtttttaaccttctggtaggcccccacatcagggtgactgctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttggctatacacaaggaattatctttctactgtcttcagGCTACAAAGTTGGATGCCACATTCATCAGGCAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCCTGAATTACCCCATTAACTTGACACTTGTGCCACTAGTGGGGGCTGTAGCTGCAGgtaagtagtttttaaccttctggtaggcccccacatcagggtgactgctg #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTT-GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatttgcctctccatttaccactactaaggaggcttttccctcagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTCGGTCTTGTTCTAATCATTGCACCCTGGAATT-TCCCGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAggtaagtgaaatattgtgaccacccatctagatgagactgccctaagaggg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTT-GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatttgcctctccatttaccactactaaggaggcttttccctcagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTCGGTCTTGTTCTAATCATTGCACCCTGGA-ATTTCCCGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAggtaagtgaaatattgtgaccacccatctagatgagactgccctaagaggg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatttgcctctccatttaccactactaaggaggcttttccctcagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGcCCTTTCGGTCTTGTTCTAATCATTGCACCCTGGAATTTCCC-GTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtaagtgaaatattgtgaccacccatctagatgagactgccctaagaggg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTT-GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatttgcctctccatttaccactactaaggaggcttttccctcagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTCGGTCTTGTTCTAATCATTGCACCCTGGAATT-TCCCGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtaagtgaaatattgtgaccacccatctagatgagactgccctaagaggg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTT-GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatttgcctctccatttaccactactaaggaggcttttccctcagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTCGGTCTTGTTCTAATCATTGCACCCTGGAATT-TCCCGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtaagtgaaatattgtgaccacccatctagatgagactgccctaagaggg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatttgcctctccatttaccactactaaggaggcttttccctcagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTCGGTCTTGTTCTAATCATTGCACCCTGGAATTTCCCGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtaagtgaaatattgtgaccacccatctagatgagactgccctaagaggg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatttgcctctccatttaccactactaaggaggcttttccctcagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTCGGTCTTGTTCTAATCATTGCACCCTGGAATTTCCCG-TGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtaagtgaaatattgtgaccacccatctagatgagactgccctaagaggg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatttgcctctccatttaccactactaaggaggcttttccctcagCTCACAAAGCTTAGCTCAGCTTTCATCCGGAAAGAGCCCTTTCGGTCTTGTTCTAATCATTGCACCCTGGAATTTCCCGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtaagtgaaatattgtgaccacccatctagatgagactgccctaagaggg #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCC-AACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTC------TACAATCCACAGACTCCACCTCAACCTAGGAAGGACAATCAATCAGAAGC-TTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTggtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCC-AACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTCAACCTAGGAAGGACAATCAATCAGAAG-CTTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTggtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTATGAT---GATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTCAACCTAGGAAGGACAATCAATCAGAAGCTTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCC-CAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGT------TTTGCAAAATTCTATCACTCGTTTCT------ACAATCCACAGACTCCACCTCAACCTAGGAAGGACAATCAATCAGAAGC-TTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTC-CCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGT------TTTGCAAAATTCTATCACTCGTTTCT------ACAATCCACAGACTCCACCTCAACCTAGGAAGGACAATCAATCAGAAGC-TTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTCAACCTAGGAAGGACAATCAATCAGAAGCTTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTCAACCTAGGAAGGACAATCAATCAGAAGCTTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTCAACCTAGGAAGGACAATCAATCAGAAGCTTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATG-CAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGA-TGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATG-CAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTG-ATGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATG-CAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGcCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGAT-GTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGC-AGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGA-TGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATG-CAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGA-TGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATG-CAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTG--ACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGAT---GTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATG-CAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTG--ACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGAT---GTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGATGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg #### Aldh3b2_ID243_9 --> 0 - 1 Original Alignment GTGGTGAATCAGATG-TTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCA-TGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTggtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from CESAR GTGGTGAATCAGATG-TTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGC-ATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTggtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Spaln_aa2Genome GTGGTGAATCAGATG-TTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGcCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAT-GATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Spaln_nt2Genome GTGGTGAATCAGATGT-TGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGC-ATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Pairagon GTGGTGAATCAGATG-TTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGC-ATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Exonerate_protein2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Exonerate_coding2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from GeneWise GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAG-CCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGG-AATTTCTGCTTCAggtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAG-CCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCCTGTGAGCTCAGTGTGTGTCCCCAACTCCA-GTCTGGAATTTCTGCTTCAggtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCT-GTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCCtGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCT-GGAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAG-CCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCCTGTGAGCTCAGTGTGTGTCCCCAACTCCAG-TCTGGAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAG-CCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCCTGTGAGCTCAGTGTGTGTCCCCAACTCCAG-TCTGGAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_protein2genome ATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_coding2genome ATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCT-GTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttatctaatgtattatgtttgttttgttttctttatagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTCGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCC-CCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtgagttgctaggtagtgcttccttacttgtgaatggtggccacaggcct Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCT-GTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttatctaatgtattatgtttgttttgttttctttatagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTCGTGACTTTGGGGAACTTAGAGTCAGTACGAGTC-CCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTggtgagttgctaggtagtgcttccttacttgtgaatggtggccacaggcct Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttatctaatgtattatgtttgttttgttttctttatagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTCGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttgctaggtagtgcttccttacttgtgaatggtggccacaggcct Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCT-GTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttatctaatgtattatgtttgttttgttttctttatagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTCGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCC-CCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttgctaggtagtgcttccttacttgtgaatggtggccacaggcct Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCT-GTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttatctaatgtattatgtttgttttgttttctttatagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTCGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCC-CCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttgctaggtagtgcttccttacttgtgaatggtggccacaggcct Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttatctaatgtattatgtttgttttgttttctttatagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTCGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttgctaggtagtgcttccttacttgtgaatggtggccacaggcct Alignment from Exonerate_coding2genome GCACTGCACAGCCGCAAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttatctaatgtattatgtttGTTTTGTTTTCTTTATAGCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTCGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttgctaggtagtgcttccttacttgtgaatggtggccacaggcct Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttatctaatgtattatgtttgttttgttttctttatagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCATTGGAGCTTGCTCGTGACTTTGGGGAACTTAGAGTCAGTACGAGTCCCCTCAAACATAATGCCAACGTAGGCAAGGAAAGCCACCAGGGCTGGGCTGgtgagttgctaggtagtgcttccttacttgtgaatggtggccacaggcct #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGA-CTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGGTACCAGGACCTCAGTTATCCACTGGAAACCTTTGTGG-GAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from CESAR GTTCCCTTGCTGGTACCAGGA-CTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGGTACCAGGACCTCAGTTATCCACTGGAAACCTTTGTG-GGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGGTACCAGGACCTCAGTTATCCACTGGAAACCTTTGTGGGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGA-CTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGGTACCAGGACCTCAGTTATCCACTGGAAACCTTTGTGG-GAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Pairagon GTTCCCTTGCTGGTACCAGGA-CTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGGTACCAGGACCTCAGTTATCCACTGGAAACCTTTGTGG-GAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGGTACCAGGACCTCAGTTATCCACTGGAAACCTTTGTGGGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGGTACCAGGACCTCAGTTATCCACTGGAAACCTTTGTGGGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGGTACCAGGACCTCAGTTATCCACTGGAAACCTTTGTGGGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta #### Best1_ID2630_9 --> 1 - 1 Original Alignment cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGT-AAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg acaccaggttccctgtgagagtgagttgaatctttccaattgctttctagtCTAAAGAAAGAAGACTTAGAGCTATGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTAAGTGGGTACTGTAGCACCATCGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTACTGAAAACTCACTTCTTGAGGGCCAGTTTCAAGGATGCAAATCAAAAAAACCAGAAAGATGTCT-GAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGTTCTCACACAggtatgtgctgttaaaaacaaaaggtaacacccatgacttctgtgaccaac Alignment from CESAR cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGT-AAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg acaccaggttccctgtgagagtgagttgaatctttccaattgctttctagtCTAAAGAAAGAAGACTTAGAGCTATGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTAAGTGGGTACTGTAGCACCATCGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTACTGAAAACTCACTTCTTGAGGGCCAGTTTCAAGGATGCAAATCAAAAAAACCAGAAAGATGTC-TGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGTTCTCACACAggtatgtgctgttaaaaacaaaaggtaacacccatgacttctgtgaccaac Alignment from Spaln_aa2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAG-TGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttccctgtgagagtgagttgaatctttccaattgctttctagTCTAAAGAAAGAAGACTTAGAGCTATGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTAAGTGGGTACTGTAGCACCATCGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTACTGAAAACTCACTTCTTGAGGGCCAGtTTCAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTG-AAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGTTCTCACACAGgtatgtgctgttaaaaacaaaaggtaacacccatgacttctgtgaccaac Alignment from Spaln_nt2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGT-AAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttccctgtgagagtgagttgaatctttccaattgctttctagTCTAAAGAAAGAAGACTTAGAGCTATGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTAAGTGGGTACTGTAGCACCATCGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTACTGAAAACTCACTTCTTGAGGGCCAGTTTCAAGGATGCAAATCAAAAAAACCAGAAAGATGTCT-GAAATTTAAGG---TGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGTTCTCACACAGgtatgtgctgttaaaaacaaaaggtaacacccatgacttctgtgaccaac Alignment from Pairagon CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGT-AAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttccctgtgagagtgagttgaatctttccaattgctttctagTCTAAAGAAAGAAGACTTAGAGCTATGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTAAGTGGGTACTGTAGCACCATCGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTACTGAAAACTCACTTCTTGAGGGCCAGTTTCAAGGATGCAAATCAAAAAAACCAGAAAGATGTCT-GAAATTTAAGG---TGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGTTCTCACACAGgtatgtgctgttaaaaacaaaaggtaacacccatgacttctgtgaccaac Alignment from Exonerate_protein2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttccctgtgagagtgagttgaatctttccaattgctttctagTCTAAAGAAAGAAGACTTAGAGCTATGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTAAGTGGGTACTGTAGCACCATCGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTACTGAAAACTCACTTCTTGAGGGCCAGTTTCAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGTTCTCACACAGgtatgtgctgttaaaaacaaaaggtaacacccatgacttctgtgaccaac Alignment from Exonerate_coding2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttccctgtgagagtgagttgaatctttccaattgctttctagTCTAAAGAAAGAAGACTTAGAGCTATGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTAAGTGGGTACTGTAGCACCATCGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTACTGAAAACTCACTTCTTGAGGGCCAGTTTCAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGTTCTCACACAGgtatgtgctgttaaaaacaaaaggtaacacccatgacttctgtgaccaac Alignment from GeneWise CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttccctgtgagagtgagttgaatctttccaattgctttctagTCTAAAGAAAGAAGACTTAGAGCTATGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTAAGTGGGTACTGTAGCACCATCGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTACTGAAAACTCACTTCTTGAGGGCCAGTTTCAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGTTCTCACACAGgtatgtgctgttaaaaacaaaaggtaacacccatgacttctgtgaccaac #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCT-CAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCCATCCC------ACGGCTGCCTCAGCCAGGTCTC-CCGGCATTCATTCATGGGATCTACCTTCAATCCCaggtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCT---CCATCCC--ACGGCTGCCTCAGCCAGGTCT-CCCGGCATTCATTCATGGGATCTACCTTCAATCCCaggtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCA------GAACCTCCATCCCACGGCTGCCTCAGCCAGGTCTCCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCT---CCATCC--CACGGCTGCCTCAGCCAGGTCTC-CCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCT-CAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCCATCC------CACGGCTGCCTCAGCCAGGTCTC-CCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCA------GAACCTCCATCCCACGGCTGCCTCAGCCAGGTCTCCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCA------GAACCTCCATCCCACGGCTGCCTCAGCCAGGTCTCCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from GeneWise GATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctaggtatccttgtcatctgtggatagAATGCACCAGAACCTGCCGCCCATGGAGCGTGACATGTACTGGAATGAATCA------GAACCTCCATCCCACGGCTGCCTCAGCCAGGTCTCCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACG-CTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACCTGTTATTCTCCAGCCTCTTGCTGTTCG-CTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACG-CTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACCTGTTATTCTCCAGCCTCTTGCTGTTC-GCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACCTGTTATTCTCCAGCCTCTTGCTGTTCGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGC-TGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACCTGTTATTCTCCAGCCTCTTGCTG-TTCGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACG-CTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACCTGTTATTCTCCAGCCTCTTGCTGTTC-GCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCT GGAAGTAGAA cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACCTGTTATTCTCCAGCCTCTTGCTGTTCGCTTTGCTAAACAAAAGCAGCTCTTggaaggcatgaggccgccactagaaatctatactgactatagggacaactcagtgaggggcagacaacttgcaacgcacatcctcaatgtagCCAGAATCAT Alignment from Exonerate_coding2genome cactaacactcttctcaggcacccagagctcacatcttcatttgacctaggtaatgctgcaatattgctcacagttgctccaagtgcttgacaaacctgttattctccagcctcttgctgttcgctttgctaaacaaaagcagctcttggaaggcatgaggccgccactagaaatctatactgactatagggacaactcagtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACCTGTTATTCTCCAGCCTCTTGCTGTTCGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat #### Bscl2_ID2423_6 --> 0 - 2 Original Alignment TATGTGCCAACAACTGGAGCAATTATTGAG-ATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAACATCCACAGCAAGCGCATCCAGATGTATGGAGCCT-CCTCCGGATCCATGCCCACTTTACGGGGCTCaggtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from CESAR TATGTGCCAACAACTGGAGCAATTATTGAG-ATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAACATCCACAGCAAGCGCATCCAGATGTATGGAGCC-TCCTCCGGATCCATGCCCACTTTACGGGGCTCaggtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Spaln_aa2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAACATCCACAGCAAGCGCATCCAGATGTATGGAGCCTCCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Spaln_nt2Genome TATGTGCCAACAACTGGAGCAATTATTGAG-ATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAACATCCACAGCAAGCGCATCCAGATGTATGGAGCCT-CCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Pairagon TATGTGCCAACAACTGGAGCAATTATTGAG-ATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAACATCCACAGCAAGCGCATCCAGATGTATGGAGCCT-CCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Exonerate_protein2genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAACATCCACAGCAAGCGCATCCAGATGTATGGAGCCTCCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Exonerate_coding2genome TATGTGCCAACAACTGGAGCAATTATTGAGAT---CCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAA--CATCCACAGCAAGCGCATCCAGATGTATGGAGCCTC-CTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from GeneWise TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAACATCCACAGCAAGCGCATCCAGATGTATGGAGCCTCCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt #### Bscl2_ID2424_7 --> 1 - 0 Original Alignment gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTG-CTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG atcctatcactaagaactgtgtgcctgtatggcttgcctttcatccacaggTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTGTCATTGTGCCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCT-GCCTCATCACCACTCCTCCTTGCAGgtacgggttcttgggctcctctttcctctcactggagctaggaaaccaat Alignment from CESAR gTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTG-CTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG atcctatcactaagaactgtgtgcctgtatggcttgcctttcatccacaggTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTGTCATTGTGCCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTC-TGCCTCATCACCACTCCTCCTTGCAGgtacgggttcttgggctcctctttcctctcactggagctaggaaaccaat Alignment from Spaln_aa2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG atcctatcactaagaactgtgtgcctgtatggcttgcctttcatccacagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTGTCATTGTGCCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGgtacgggttcttgggctcctctttcctctcactggagctaggaaaccaat Alignment from Spaln_nt2Genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGC-TCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG atcctatcactaagaactgtgtgcctgtatggcttgcctttcatccacagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTGTCATTGTGCCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCT-GCCTCATCACCACTCCTCCTTGCAGgtacgggttcttgggctcctctttcctctcactggagctaggaaaccaat Alignment from Pairagon GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTG-CTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG atcctatcactaagaactgtgtgcctgtatggcttgcctttcatccacagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTGTCATTGTGCCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCT-GCCTCATCACCACTCCTCCTTGCAGgtacgggttcttgggctcctctttcctctcactggagctaggaaaccaat Alignment from Exonerate_protein2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG atcctatcactaagaactgtgtgcctgtatggcttgcctttcatccacagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTGTCATTGTGCCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGgtacgggttcttgggctcctctttcctctcactggagctaggaaaccaat Alignment from Exonerate_coding2genome GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG atcctatcactaagaactgtgtgcctgtatggcttgcctttcatccacagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTGTCATTGTGCCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGgtacgggttcttgggctcctctttcctctcactggagctaggaaaccaat Alignment from GeneWise GTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTGGGTGTGGCCAGCAACTTCACGTTCCTCAGCGTCATCGTGCTCTTCAGCTATATGCAGTGGGTGTGGGGTGCTGTCTGGCCCCGCCACCGCTTCTCTCTGCAG atcctatcactaagaactgtgtgcctgtatggcttgcctttcatccacagGTACCTGCTGTACAATTTTCCCATGACTTGTGCCTTTGTAGGTGTAGCAAGCAATTTCACATTTCTCAGTGTCATTGTGCCTTTTCAGTTATATGCAGTGGGCATGGGGTGCTGTCTGCCTCATCACCACTCCTCCTTGCAGgtacgggttcttgggctcctctttcctctcactggagctaggaaaccaat #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATT-AGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTCAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACT-TGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATT-AGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTCAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGAC-TTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Spaln_aa2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATT-AGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTcAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTT-GTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Spaln_nt2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATT-AGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTCAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTT-GTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Pairagon ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATT-AGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTCAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTT-GTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATT-AGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGAC---TTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTCAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTGTTTCTGATGAAGTAGgtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Exonerate_coding2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAG---ACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATT--CAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTT-GTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTCAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAA-GATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttaggtGGTGGGAAGGTTCACTTTGAACGTCTTTGTAGAGCTGATGGGTCCCAAGCTAC-AGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAA-GATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttaggtGGTGGGAAGGTTCACTTTGAACGTCTTTGTAGAGCTGATGGGTCCCAAGCTA-CAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Spaln_aa2Genome ATCAGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTG---GGAAGGTTCACTTTGAACGTCTTTGTAGAGCTGATGGGTCCCAAGCTACA-GTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGAT-TTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAACGTCTTTGTAGAGCTGATGGGTCCCAAGCTAC-AGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAA-GATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAACGTCTTTGTAGAGCTGATGGGTCCCAAGCTAC-AGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAACGTCTTTGTAGAGCTGATGGGTCCCAAGCTACAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAACGTCTTTGTAGAGCTGATGGGTCCCAAGCTACAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAACGTCTTTGTAGAGCTGATGGGTCCCAAGCTACAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gaatggatccacggctcagtcactgatctctttcttccctttctggatagTTTGACACCAATGGCGATGGTTGCATCAGTGTTGGGGAACTCCAAGCCGCACTTAAAGCCCCTGCTGGGTGTACGTCTCAGCCAACAGGAAGTAG-TGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTCGAAggtaagcctccacctgctttgtccctttatcttgtgcatagaactatggca Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gaatggatccacggctcagtcactgatctctttcttccctttctggatagTTTGACACCAATGGCGATGGTTGCATCAGTGTTGGGGAACTCCAAGCCGCACTTAAAGCCCCTGCTGGGTGTACGTCTCAGCCAACAGGAAGTA-GTGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTCGAAggtaagcctccacctgctttgtccctttatcttgtgcatagaactatggca Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccacggctcagtcactgatctctttcttccctttctggatagTTTGACACCAATGGCGATGGTTGCATCAGTGTTGGGGAACTCCAAGCCGCACTTAAAGCCCCTGCTGGGTGTACGTCTCAGCCAACAGGAAGTAGTGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTCGAAGgtaagcctccacctgctttgtccctttatcttgtgcatagaactatggca Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTC-TGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccacggctcagtcactgatctctttcttccctttctggatagTTTGACACCAATGGCGATGGTTGCATCAGTGTTGGGGAACTCCAAGCCGCACTTAAAGCCCCTGCTGGGTGTACGTCTCAGCCAACAGGAAGTAG-TGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTCGAAGgtaagcctccacctgctttgtccctttatcttgtgcatagaactatggca Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAG-CTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccacggctcagtcactgatctctttcttccctttctggatagTTTGACACCAATGGCGATGGTTGCATCAGTGTTGGGGAACTCCAAGCCGCACTTAAAGCCCCTGCTGGGTGTACGTCTCAGCCAACAGGAAGTAG-TGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTCGAAGgtaagcctccacctgctttgtccctttatcttgtgcatagaactatggca Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccacggctcagtcactgatctctttcttccctttctggatagTTTGACACCAATGGCGATGGTTGCATCAGTGTTGGGGAACTCCAAGCCGCACTTAAAGCCCCTGCTGGGTGTACGTCTCAGCCAACAGGAAGTAGTGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTCGAAGgtaagcctccacctgctttgtccctttatcttgtgcatagaactatggca Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gaatggatccacggctcagtcactgatctctttcttccctttctggatagTTTGACACCAATGGCGATGGTTGCATCAGTGTTGGGGAACTCCAAGCCGCACTTAAAGCCCCTGCTGGGTGTACGTCTCAGCCAACAGGAAGTAGTGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTCGAAggtaagcctccacctgctttgtccctttatcttgtgcatagaactatggca Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gaatggatccacggctcagtcactgatctctttcttccctttctggatagTTTGACACCAATGGCGATGGTTGCATCAGTGTTGGGGAACTCCAAGCCGCACTTAAAGCCCCTGCTGGGTGTACGTCTCAGCCAACAGGAAGTAGTGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTCGAAggtaagcctccacctgctttgtccctttatcttgtgcatagaactatggca #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAG-CTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTAGTGGAGCTTGCGCCAGGCTGTTCCAGCTCTGCAAGGG------GTAG-CGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACggtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from CESAR TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAG-CTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTAGTGGAGCTTGCGCCAGGCTGTTCCAGCTCTGCAAGGG------GTA-GCGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACggtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Spaln_aa2Genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTAGTGGAGCTTGCGCCAGGCTGTTCCAGCTCTGCAAGGGGTAGC------GGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGgtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Spaln_nt2Genome TTTGACAAGGA---CAGGGATGGACGGATCACGGTGGCGGAGCT-GCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACG gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTAGTGGAGCTTGCGCCAGGCTGTTCCAGCTCTGCAAGGGGTAGC-------GGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGgtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Pairagon TTTGACA---AGGACAGGGATGGACGGATCACGGTGGCGGAGC-TGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT---AGACTTTGACG gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTAGTGGAGCTTGCGCCAGGCTGTTCCAGCTCTGCAAGGGGTAGC-------GGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGgtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Exonerate_protein2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTAGTGGAGCTTGCGCCAGGCTGTTCCAGC------TCTGCAAGGGGTAGCGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGgtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from Exonerate_coding2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTAGTGGAGCTTGCGCCAGGCTGTTCCAGC------TCTGCAAGGGGTAGCGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAgaatttgacggtaagaaaccctacatccccatcatgcatacatgtataatgtgaaaatct Alignment from GeneWise TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTA---GAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGAC---------GAGTTTGTAATGATGCTATCTACAGGC gaagatactgcaaggggcactgtttggacatctcctcatctttcctccagTTTGATAAGGAGGACAGGGATGGATGGATCATGGTAGTGGAGCTT---------GCGCCAGGCTGTTCCAGCTCTGCAAGGGGTAGCGGCACTGAAGTGGATGAAATGTTGCGCAAAATGGACCTCAATGGGGATGGGACCATAGAAGAATTTGACGGTAAGAAACCCTACATCCCCATCATGCATACATGTataatgtgaaaatct #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGCAAGTTAGGGCTGGTGGAATTCAACATCCTATGGA-CCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from CESAR CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGCAAGTTAGGGCTGGTGGAATTCAACATCCTAT-GGACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagcgagATGGAA---ATGGGCAAGTTAGGGCTGGTGGAATTCAACATCCTATGGAC-CATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Spaln_nt2Genome CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGCAAGTTAGGGCTGGTGGAATTCAACATCCTATGG-ACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Pairagon CGAGATGGCAACGGG-AAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGCAAGTTAGGGCTGGTGGAATTCAACATCCTATGG-ACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGCAAGTTAGGGCTGGTGGAATTCAACATCCTATGGACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Exonerate_coding2genome tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagcgagatggaaatgggcaagttagggctggtggaattcaacatcctatggaccatatccgaaattatctggtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGCAAGTTAGGGCTGGTGGAATTCAACATCCTATGGACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAGCGGGTG-AACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGT-GAAAGGTCCTTGGAGTGACaggtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from CESAR GTAACTTACCAGGGCCAGCGGGTG-AACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAG-TGAAAGGTCCTTGGAGTGACaggtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGGGTG-AACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGT-GAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Pairagon GTAACTTACCAGGGCCAGCGGGTG-AACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGT-GAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Exonerate_coding2genome ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaaggtaacctatcagggcccacgagtgcaaccttattcgtatgtggaattcctggggtccagtggagtgaaaggtccttggagtgacaggtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGCAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGAAAGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAACAGACA-CTGCCAGGGAGCACTAggtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from CESAR GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAACAGAC-ACTGCCAGGGAGCACTAggtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Spaln_aa2Genome GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCAcAACCCCCAATTCATTGTAGATGGAGCCACCCGAACAGACAC-TGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Spaln_nt2Genome GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAACAGACA-CTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Pairagon GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAACAGACA-CTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Exonerate_protein2genome GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGAC--ATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAACAGACAC---TGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from Exonerate_coding2genome GAACTGATGTCA-AACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGAC--ATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAACAGACAC---TGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaaggaggcccacggtacagtaattggctgtgccagGAATTGATGTCACAACCCCCAATTCATTGTAGATGGAGCCACCCGAACAGACACTGCCAGGGAGCACTAGgtgggtagacatccctaggcatggggtgctgtgtgacttgagctatgttt #### Carns1_ID386_6 --> 2 - 0 Original Alignment CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAggtgctctgtaatccctccacccctccttgtgcaggaGGTCCTCCACCTGGACCTGAGCTGGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from CESAR CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAggtgggttgtaatccctccacccctccttgtgcaggaGGTCCTCCACCTGGACCTGAGCTGGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGT-GCAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Spaln_aa2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCT---GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgctctgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTCGTGCACATGTGTGCAGTGGTGTGTCAGAT---CCAGGGTGCAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Spaln_nt2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgctctgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Pairagon CGGCTGCCCTTACCAGGC----------------------------------GGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGGTGCTCTGTAATCCCTCCACCCCTCCTTGTGCAGGAGGTCCTCCACCTGGACCTGAGCTGGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTG-CAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Exonerate_protein2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgctctgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGCAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Exonerate_coding2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgctctgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGCAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from GeneWise CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCT---GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtgctctgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTCGTGCACATGTGTGCAGTGGTGTGTCAGAT---CCAGGGTGCAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTG-CTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCACAGTGGTGACAATGGTGCTAGGATTGCTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCC-TGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAggtgggttgtaatttttcttttctttatccattaggaGGTCCTCCACCTGG Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTG-GAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCACAGTGGTGACAATGGTGCTAGGATTGCTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCC-TGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAggtgggttgtaatccctccacccctccttgtgcaggaGGTCCTCCACCTGG Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCACAGTGGTGACAATGGTGCTAGGATTGCTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatttttcttttctttatccattagGAGGTCCTCCACCTGG Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGA-GAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCACAGTGGTGACAATGGTGCTAGGATTGCTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCT-GTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatttttcttttctttatccattagGAGGTCCTCCACCTGG Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGC-TGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCACAGTGGTGACAATGGTGCTAGGATTGCTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCC-TGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatttttcttttctttatccattagGAGGTCCTCCACCTGG Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCACAGTGGTGACAATGGTGCTAGGATTGCTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatttttcttttctttatccattagGAGGTCCTCCACCTGG Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCACAGTGGTGACAATGGTGCTAGGATTGCTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatttttcttttctttatccattagGAGGTCCTCCACCTGG Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCACAGTGGTGACAATGGTGCTAGGATTGCTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatttttcttttctttatccattagGAGGTCCTCCACCTGG #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTG-TCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacaggaAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGCTCCCAGCTGCTAGAGAACCGGCTGCTCATGC-GTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTG-TCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacaggaAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGCTCCCAGCTGCTAGAGAACCGGCTGCTCATGC-GTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGCTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTG-TCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGT---CTGCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGCTCCCAGCTGCTAGAGAACCGGCTGCTCATG-CGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTG-TCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGT---CTGCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGCTCCCAGCTGCTAGAGAACCGGCTGCTCATGC-GTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGCTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGCTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG tgctggttgacttcattggtttgcctgatatgggatttatccttctacagGAAATATGCTCCTCTGCCTGTCT---GCCTGGCTAATGAAGGTGGCAACTCCAGGGCAAGAGGGTGAGGCAGTTTTGCTGGTTTCTAAAGCTGTGAGCTTCTATCCAGGTGGTTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGTAAGGAGGCAGCAGAGCTGGCCCGGAATCTCACTTGCCCTACGGGAACCTCATCAGAGCTGCTCCCAGCTGCTAGAGAACCGGCTGCTCATGCGTGGTTACTTTCCCAGCAGAGTGGTGTGGCTGTGCCTGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAGCTTAGTGGGAAGGAAGGCCAGGAAACACTTGTTAAAGAGGAAGTAGAGGCCTTTGTACATTCAGAGGCCTTGGGTGATGCTTCACAGgtaagtgcaacctcccatgagaaagtatgcctaactgtttataccctttc #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGT-TCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg caaatatagacatggaggacaggacaggcacagtgcttgttttaacacaggcTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTCTCTCTCAGCACCTTCCTATCACTGTTGC-GGAGGGTGGGGTTCAAAGCCCTggtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGT-TCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg caaatatagacatggaggacaggacaggcacagtgcttgttttaacacaggcTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTCTCTCTCAGCACCTTCCTATCACTGTTG-CGGAGGGTGGGGTTCAAAGCCCTggtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTCTCTCTCAGCACCTTCCTATCACTGTTGCGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGT-TCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTCTCTCTCAGCACCTTCCTATCACTGTTGC-GGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGT-TCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTCTCTCTCAGCACCTTCCTATCACTGTTGC-GGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTCTCTCTCAGCACCTTCCTATCACTGTTGCGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTCTCTCTCAGCACCTTCCTATCACTGTTGCGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG caaatatagacatggaggacaggacaggcacagtgcttgttttaacacagGCTGCCCTGGGGCAGAGGTCACCTTGTGTGTTCTAGGTCTCTCTCAGCACCTTCCTATCACTGTTGCGGAGGGTGGGGTTCAAAGCCCTGgtaagattgtgcttctgtaataccctaccttctcctacaaaatgggaaca #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTC-TTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg tgatgagtctacggcctgtgtcactgtagacatcatattaattttttcagaaTGGTACTTCATGGTCCTTAGACTCCATCTTCCTCACCATCTTTGTAT-AGAAGCAGTC---AAGCTTATTGCCTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGggtcagtgaatacaggtgatttaggatggtcagggaatacatcatttagag Alignment from CESAR aaTGGTACTTCATGGTC-TTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg tgatgagtctacggcctgtgtcactgtagacatcatattaattttttcagaaTGGTACTTCATGGTCCTTAGACTCCATCTTCCTCACCATCTTTGTA-TAGAAGCAGTC---AAGCTTATTGCCTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGggtcagtgaatacaggtgatttaggatggtcagggaatacatcatttagag Alignment from Spaln_aa2Genome AATGGTACTTCATGGTC-TTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgagtctacggcctgtgtcactgtagacatcatattaattttttcagAATGGTACTTCATGGTCcTTAGACTCCATCTTCCTCACCATCTTTGTATA-GAAGCAGTC---AAGCTTATTGCCTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtcagtgaatacaggtgatttaggatggtcagggaatacatcatttagag Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCT-TGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgagtctacggcctgtgtcactgtagacatcatattaattttttcagAATGGTACTTCATGGTCCTTAGACTCCATCTTCCTCACCATCTTTGTA-TAGAAGCAG---TCAAGCTTATTGCCTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtcagtgaatacaggtgatttaggatggtcagggaatacatcatttagag Alignment from Pairagon AATGGTACTTCATGGT-CTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgagtctacggcctgtgtcactgtagacatcatattaattttttcagAATGGTACTTCATGGTCCTTAGACTCCATCTTCCTCACCATCTTTGTA-TAGAAGCAG---TCAAGCTTATTGCCTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtcagtgaatacaggtgatttaggatggtcagggaatacatcatttagag Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgagtctacggcctgtgtcactgtagacatcatattaattttttcagAATGGTACTTCATGGTCCTT---AGACTCCATCTTCCTCACCATCTTTGTATAGAAGCAGTCAAGCTTATTGCCTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtcagtgaatacaggtgatttaggatggtcagggaatacatcatttagag Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgagtctacggcctgtgtcactgtagacatcatattaattttttcagAATGGTACTTCATGGTCCTT---AGACTCCATCTTCCTCACCATCTTTGTATAGAAGCAGTCAAGCTTATTGCCTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtcagtgaatacaggtgatttaggatggtcagggaatacatcatttagag Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG tgatgagtctacggcctgtgtcactgtagacatcatattaattttttcagAATGGTACTTCATGGTCCTT---AGACTCCATCTTCCTCACCATCTTTGTATAGAAGCAGTCAAGCTTATTGCCTTGGGCTTAGAGTACTTTTATGACCCATCAAATAACCTGGgtcagtgaatacaggtgatttaggatggtcagggaatacatcatttagag #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTG-AGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagtATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCC-CACCCTCATGTTTACCTGCCTCtgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTG-AGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagtATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTCAGTGGGTCATTACCATCAATCACAGCCATC-CCACCCTCATGTTTACCTGCCTCtgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTG-AGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTcAGTGGGTCATTACCATCAATCACAGCCATCCC-ACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTG-AGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCC-CACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTC-TGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCC-CACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCCCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCCCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTCAGTGGGTCATTACCATCAATCACAGCCATCCCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGCCT gaaatctaatttggttatattgataatggaagtttttcttgttatttcagtcCTCTTCTCTGTGATACTCCAAGCACTCTTTCAGGATTCACGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCC-TTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaaggtaacctaaggctccagaaacccctttcctttttaatagctGCCT Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGCCT gaaatctaatttggttatattgataatggaagtttttcttgttatttcagtcCTCTTCTCTGTGATACTCCAAGCACTCTTTCAGGATTCACGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCC-TTTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaaggtaacctaaggctccagcgctctctgtttgcccatttagctGCCT Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT gaaatctaatttggttatattgataatggaagtttttcttgttatttcagTCCTCTTCTCTGTGATACTCCAAGCACTCTTTCAGGATTCAcGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCT-TTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaggtaacctaaggctccagaaacccctttcctttttaatagCTGCCT Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT gaaatctaatttggttatattgataatggaagtttttcttgttatttcagTCCTCTTCTCTGTGATACTCCAAGCACTCTTTCAGGATTCACGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCT-TTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaggtaacctaaggctccagaaacccctttcctttttaatagCTGCCT Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAGG--------------------------------------------CGCCT gaaatctaatttggttatattgataatggaagtttttcttgttatttcagTCCTCTTCTCTGTGATACTCCAAGCACTCTTTCAGGATTCACGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCT-TTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGGTAAGGTAACCTAAGGCTCCAGAAACCCCTTTCCTTTTTAATAGCTGCCT Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCA-GACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACC--CTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT gaaatctaatttggttatattgataatggaagtttttcttgttatttcagTCCTCTTCTCTGTGATACTCCAAGCACTCTTTCAGGATTCACGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCT---TTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaggtaacctaaggctccagaaacccctttcctttttaatagCTGCCT Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTC---AGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT gaaatctaatttggttatattgataatggaagtttttcttgttatttcagTCCTCTTCTCTGTGATACTCCAAGCACTCTTTCAGGAT--TCACGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCT-TTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaggtaacctaaggctccagaaacccctttcctttttaatagCTGCCT Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTC---CAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT gaaatctaatttggttatattgataatggaagtttttcttgttatttcagTCCTCTTCTCTGTGATACTCCAAGCACTCTTTCAGGATTCACGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCT---TTCATGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaggtaacctaaggctccagaaacccctttcctttttaatagCTGCCT #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagggTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGT-CCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAggtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagggTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAG-TCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAggtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAG-TCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAG-TCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAG-CTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGG-GTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACctgtgagaacacttagggtcaggttaagatggaatcttctatatccataggG Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAG-CTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGG-GGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACctgtgagaacacttagggtcaggttaagcctggccttctccttgccccaggG Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagatggaatcttctatatccatagGG Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGC-TGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGG-GTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagatggaatcttctatatccatagGG Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAG-CTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGG-GTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagatggaatcttctatatccatagGG Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagatggaatcttctatatccatagGG Alignment from Exonerate_coding2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagatggaatcttctatatccatagGG Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagatggaatcttctatatccatagGG #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG-CGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTT---GAAGGGGCACCGGCGAGATGGCCCTTGGGCTGTGGAGA-ACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG--CTTGAAGGGGCACCGGCGAGATGGCCCTTGGGCTGTGGAGA-ACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACCGGCGAGATGGCCCTTGGGCTGTGGAGAACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG-CGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACCGGCGAGATGGCCCTTGGGCTGTGGAGA-ACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACT----GGGGC----GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG----------CTTGAAGGGGCACCGGCGAGATGGCCCTTGGGCTGTGGAGA-ACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTGCTTGAAGGGGCACCGGCGAGA---TGGCCCTTGGGCTGTGGAGAACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTGCTTGAAGGGGCACCGGCGAGA---TGGCCCTTGGGCTGTGGAGAACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAG-CTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGCTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGG-ACTGCAGAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from CESAR GACCTGGACTCTCTGCGGCATCAG-CTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGCTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGG-ACTGCAGAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAG-CTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGcTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGA-CTGCAGAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCT-GGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGCTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGA-CTGCAGAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGC-TGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGCTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGG-ACTGCAGAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGCTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGACTGCAGAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCT---GGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAG--CTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGA-CTGCAGAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGCTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGACTGCAGAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAG-GAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAACGAAGCAGAGGCATTAAAA---GAGGCAGGTCACC-GCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAG-GAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAACGAAGCAGAGGCATTAAAAGAG---GCAGGTCAC-CGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAACGAAGCAGAGGCATTAAA---AGAGGCAGGTCACCGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAG-GAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAACGAAGCAGAGGCATTAAAAGA---GGCAGGTCACC-GCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAG-GAGGCAGAGGCA------------------CTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAACGAAGCAGAGGCATTAAAAGAGGCAGGTCACC----------------------GCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAACGAAGCAGAGGCATTAAA---AGAGGCAGGTCACCGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Exonerate_coding2genome GAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgCAGACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAACGAAGCAGAGGCATTAAA---AGAGGCAGGTCACCGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAACGAAGCAGAGGCATTAAA---AGAGGCAGGTCACCGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAG-CAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaactcatcggttttcacccttgtccagaGAAGAGAGGGCTGAACCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGG-TGCTGAAATTCATAGACTTCGCCAGGAGgtcagttccatcttccttcactaatccagctcccacaacactccatattg Alignment from CESAR gGAGGAGAAGGCTGAG-CAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaactcatcggttttcacccttgtccagaGAAGAGAGGGCTGAACCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTG-GTGCTGAAATTCATAGACTTCGCCAGGAGgtcagttccatcttccttcactaatccagctcccacaacactccatattg Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaactcatcggttttcacccttgtccagAGAAGAGAGGGCTGAACCAGCTACTAGACTCCCATGCAGAGGTCCA---GTTGGTGCTGAAATTCATAGACTTCGCCAGGAGgtcagttccatcttccttcactaatccagctcccacaacactccatattg Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAA-CTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaactcatcggttttcacccttgtccagAGAAGAGAGGGCTGAACCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGG-TGCTGAAATTCATAGACTTCGCCAGGAGgtcagttccatcttccttcactaatccagctcccacaacactccatattg Alignment from Pairagon GGAGGAGAAGGCTGAG-CAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaactcatcggttttcacccttgtccagAGAAGAGAGGGCTGAACCAGCTACTAGACTCCCATGCAGAGGTCCAG----TTGGTGCTGAAATTCATAGACTTCGCCAGGAGgtcagttccatcttccttcactaatccagctcccacaacactccatattg Alignment from Exonerate_protein2genome ggacaggctctaccagttggaggaactcatcggttttcacccttgtccagagaagagagggctgaaccagctactagactcccatgcagaggtccagttggtgctgaaattcatagacttcgccaggaggtcagttccatcttccttcactaatccagctcccacaacactccatattg Alignment from Exonerate_coding2genome ggacaggctctaccagttggaggaactcatcggttttcacccttgtccagagaagagagggctgaaccagctactagactcccatgcagaggtccagttggtgctgaaattcatagacttcgccaggaggtcagttccatcttccttcactaatccagctcccacaacactccatattg Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGC---TTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaactcatcggttttcacccttgtccagAGAAGAGAGGGCTGAACCAGCT------ACTAGACTCCCATGCAGAGGTCCAGTTGGTGCTGAAATTCATAGACTTCGCCAGGAGgtcagttccatcttccttcactaatccagctcccacaacactccatattg #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAAT-GCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAATCGCA------GAGGGTGTCTCCCACCATTTAG-TCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGgtgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAAT-----CGCAGAGGGTGTCTCCCACCATTTA-GTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGgtgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAATC-----GCAGAGGGTGTCTCCCACCATTTAGT-CTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAAT-----CGCAGAGGGTGTCTCCCACCATTTAG-TCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAAT-----CGCAGAGGGTGTCTCCCACCATTTAG-TCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAAT------CGCAGAGGGTGTCTCCCACCATTTAGTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Exonerate_coding2genome ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagcggttggctgaactgttgcttgagagggagccagaccacctgctgctccctgaggctcctgccaatcgcagagggtgtctcccaccatttagtctgcaattgaccaatgctaaggcccaactgagacgcctcaggagggaggtgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAATCGC------AGAGGGTGTCTCCCACCATTTAGTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctagtatggatatattcaggagcctgttcactccctagGAGGAGCTACAGCCTTTTAATCTTGTCAGCACCTCCAGACCTCCAGC-TACAGGGTGTGAACCCTTCTCAggtttgggttctggctcttttctaccatttgactctcttatatatcctcat Alignment from CESAR GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctagtatggatatattcaggagcctgttcactccctagGAGGAGCTACAGCCTTTTAATCTTGTCAGCACCTCCAGACCTCC-AGCTACAGGGTGTGAACCCTTCTCAggtttgggttctggctcttttctaccatttgactctcttatatatcctcat Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagtatggatatattcaggagcctgttcactccctagGAGGAGCTACAGCCTTTTAATCTTGTCAGCACCTCCAGACCTCCAGCTACAGGGTGTGAACCCTTCTCAGgtttgggttctggctcttttctaccatttgactctcttatatatcctcat Alignment from Spaln_nt2Genome GAGGAGCTACAGC-TGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagtatggatatattcaggagcctgttcactccctagGAGGAGCTACAGCCTTTTAATCTTGTCAGCACCTCCAGACCTCCAG-CTACAGGGTGTGAACCCTTCTCAGgtttgggttctggctcttttctaccatttgactctcttatatatcctcat Alignment from Pairagon GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagtatggatatattcaggagcctgttcactccctagGAGGAGCTACAGCCTTTTAATCTTGTCAGCACCTCCAGACCTCCAG-CTACAGGGTGTGAACCCTTCTCAGgtttgggttctggctcttttctaccatttgactctcttatatatcctcat Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagtatggatatattcaggagcctgttcactccctagGAGGAGCTACAGCCTTTTAATCTTGTCAGCACCTCCAGACCTCCAGCTACAGGGTGTGAACCCTTCTCAGgtttgggttctggctcttttctaccatttgactctcttatatatcctcat Alignment from Exonerate_coding2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctagtatggatatattcaggagcctgttcactccctagGAGGAGCTACAGCCTTTTAATCTTGTCAGCACCTCCAGACCTCCAGCTACAGGGTGTGAACCCTTCTCAGgtttgggttctggctcttttctaccatttgactctcttatatatcctcat Alignment from GeneWise GCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAGAA acccagtagcacctagtatggatatattcaggagcctgttcactccctaggaggagctacagCCTTTTAATCTTGTCAGCACCTCCAGACCTCCAGCTACAGGGTGTGAACCCT---TCTCAGgtttgggttctggctcttttctaccatttgactctcttatatatcctcat #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCT-TTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct acatggctaattaactgttccattgtagatacctgtttctggtctttcagatTATGCATTTCTAAATTATGCACCCTCCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATAC-TCGCCTGTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGctgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCT-TTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct acatggctaattaactgttccattgtagatacctgtttctggtctttcagatTATGCATTTCTAAATTATGCACCCTCCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATAC-TCGCCTGTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGctgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTCGCCTGTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCT-TCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATAC-TCGCCTGTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Pairagon ATTATGCCTTTCTAAATTATGCA-CCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATAC-TCGCCTGTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTCGCCTGTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTCGCCTGTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTCGCCTGTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGA-CATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttacttctttcttggt Alignment from CESAR GTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATG-ACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctcagcccctcttaccttcc Alignment from Spaln_aa2Genome GGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctaggttattgtggtgagGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAC-ATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttacttctttcttggt Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGC-AGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATG-ACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttacttctttcttggt Alignment from Pairagon ------------------------------------------------AGGTTGCCGTGGTGAGG-CAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG TTGGTTCTCCTGTGAGTCCAGTCTCATTAGTTTCTTTTAAAACCGTCTAGGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGAC-ATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttacttctttcttggt Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttacttctttcttggt Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttacttctttcttggt Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG-------------------------------------------------- ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCCAGAGGGGAAGTGGCCAGATCTTTGCAATGACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGGTGAGGTGGCACAAAAATGCAAAATCTAGCCTTTTTACTTCTTTCTTGGT #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTA-GTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTACGTGAAGGGAGACCACTGTTGGGTGACAG-TTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTA-GTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG ggtggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTACGTGAAGGGAGACCACTGTTGGGTGACAG-TTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTACGTGAAGGGAGACCACTGTTGGGTGACAGTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTA-GTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTACGTGAAGGGAGACCACTGTTGGGTGACAG-TTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTA-GTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTACGTGAAGGGAGACCACTGTTGGGTGACAG-TTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTACGTGAAGGGAGACCACTGTTGGGTGACAGTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gttggcacaaaaatgcaaaatctagcctcagcccctcttaccttccgcagACAACCTGTCTCCGGGAAGAGCGAGATGTTTTACGTGAAGGGAGACCACTGTTGGGTGACAGTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from GeneWise --------------------------------------------------ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG GTTGGCACAAAAATGCAAAATCTAGCCTCAGCCCCTCTTACCTTCCGCAGACAACCTGTCTCCGGGAAGAGCGAGATGTTTTACGTGAAGGGAGACCACTGTTGGGTGACAGTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaagaagtcctatgtcatagaggggttaccctgacagtgctgttttttt #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAAC-ATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagaGATGTGAAGCCAGACAACCATTCTACTGAGCATGAATGGGCAGCTTTGCT-GGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from CESAR gGATGTGAAGCCTGACAAC-ATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagaGATGTGAAGCCAGACAACCATTCTACTGAGCATGAATGGGCAGCTT-TGCTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACCATTCTACTGAGCATGAATGGGCAGCTTTGCTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAAC-ATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACCATTCTACTGAGCATGAATGGGCAGCTTTG-CTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Pairagon GGATGTGAAGCCTGACAA-CATCCTGCTGGACATGAATGGCCACATCCGC----CTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACCATTCTACTGAGCATGAATGGGCA-----GCTTTGCTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACCATTCTACTGAGCATGAATGGGCAGCTTTGCTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACCATTCTACTGAGCATGAATGGGCAGCTTTGCTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACCATTCTACTGAGCATGAATGGGCAGCTTTGCTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCC-AGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCACGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCAT-GGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCC-AGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCACGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCAT-GGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCC-AGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAcGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGTG-GTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGC-CAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCACGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCAT-GGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGC-CAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCACGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCAT-GGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCACGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCACGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCACGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCC-CAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGACCCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGC-ACTGGTACATGCCTGCAGCCAAgggtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCC-CAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGACCCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGC-ACTGGTACATGCCTGCAGCCAAgggtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGACCCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCC-AGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGACCCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCA-CTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGG-CCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGACCCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCA-CTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGACCCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGACCCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG taggccctgacttctcaaaccagaccctccatggcgaactcttcccacagACTGTCCATGCAGCCCCTGAGATGAATGGGATAGGGTCTCCTGAGGGTCAGTCTCAAGAGACCCCAACTGAGGAAGGAAGTAGTAGCCCTAAGGGAGCACTGGTACATGCCTGCAGCCAAGGgtaaatgcatggtagttgctgccaggaaggggcaaaataacatcacgctg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aaataacatcacgctgtcattccactctgaccttccactctgtcctgcaggATCAGTGTTGGTAAAATGGAGCGTTCTATGCCGTTTGCAGGCAGTAAACCAGCAGCTGA-TCGAGAGCAGGAGTGGgtatgtatgaagtatgacaaagccgaggttgctgccagctggctgggttg Alignment from CESAR gATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aaataacatcacgctgtcattccactctgaccttccactctgtcctgcaggATCAGTGTTGGTAAAATGGAGCGTTCTATGCCGTTTGCAGGCAGTAAACCAGCAGCTG-ATCGAGAGCAGGAGTGGgtatgtatgaagtatgacaaagccgaggttgctgccagctggctgggttg Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aaataacatcacgctgtcattccactctgaccttccactctgtcctgcagGATCAGTGTTGGTAAAATGGAGCGTTCTATGCCGTTTGCAGGCAGTAAACCAGCAGCTGATCGAGAGCAGGAGTGGgtatgtatgaagtatgacaaagccgaggttgctgccagctggctgggttg Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aaataacatcacgctgtcattccactctgaccttccactctgtcctgcagGATCAGTGTTGGTAAAATGGAGCGTTCTATGCCGTTTGCAGGCAGTAAACCAGCAGCTGA-TCGAGAGCAGGAGTGGgtatgtatgaagtatgacaaagccgaggttgctgccagctggctgggttg Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aaataacatcacgctgtcattccactctgaccttccactctgtcctgcagGATCAGTGTTGGTAAAATGGAGCGTTCTATGCCGTTTGCAGGCAGTAAACCAGCAGCTGA-TCGAGAGCAGGAGTGGgtatgtatgaagtatgacaaagccgaggttgctgccagctggctgggttg Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aaataacatcacgctgtcattccactctgaccttccactctgtcctgcagGATCAGTGTTGGTAAAATGGAGCGTTCTATGCCGTTTGCAGGCAGTAAACCAGCAGCTGATCGAGAGCAGGAGTGGgtatgtatgaagtatgacaaagccgaggttgctgccagctggctgggttg Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aaataacatcacgctgtcattccactctgaccttccactctgtcctgcagGATCAGTGTTGGTAAAATGGAGCGTTCTATGCCGTTTGCAGGCAGTAAACCAGCAGCTGATCGAGAGCAGGAGTGGgtatgtatgaagtatgacaaagccgaggttgctgccagctggctgggttg Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aaataacatcacgctgtcattccactctgaccttccactctgtcctgcagGATCAGTGTTGGTAAAATGGAGCGTTCTATGCCGTTTGCAGGCAGTAAACCAGCAGCTGATCGAGAGCAGGAGTGGgtatgtatgaagtatgacaaagccgaggttgctgccagctggctgggttg #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAG-AGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGG-GACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAG-AGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGG-GGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAG-AGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGC-GGGGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAG-AGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGG-GACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGCACCAAGCAACGTCTGGAGGGCGAACGGCGGGGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGC-TGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTTTGTCAgtgagctgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACCTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGT-ATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAaggtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from CESAR GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGC-TGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTTTGTCAgtaggatgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACCTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTG-TATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAaggtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Spaln_aa2Genome GCTTCCT GTCGGTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTgtcagtgagctgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTG---TTCGATGGGACCTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTA-TTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Spaln_nt2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGC-TGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtgagctgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACCTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTG-TATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Pairagon GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGG-CTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtgagctgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACCTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTG-TATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Exonerate_protein2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGT-CGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTG--TTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtgagctgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACCTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTA---TTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Exonerate_coding2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGT-CGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTG--TTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtgagctgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACCTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTA---TTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from GeneWise GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTG------TTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtgagctgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGA------TGGGACCTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGACCTCACGGAC-AACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagaaAAAGATGAGTTTGAGATTCCTGACCTGACA---CAACAGCCGGCGTCAGCTCTTCCGGAGCAAGA-TAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagaaAAAGATGAGTTTGAGATTCCTGACCTGACA--CAACAGCCGGCGTCAGCTCTTCCGGAGCAAG-ATAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACAC--AACAGCCGGCGTCAGCTCTTCCGGAGCAAGAT-AAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGAC--ACAACAGCCGGCGTCAGCTCTTCCGGAGCAAGA-TAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGAC--ACAACAGCCGGCGTCAGCTCTTCCGGAGCAAGA-TAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACACAACAGCCGGCGTCAGCTCTT---CCGGAGCAAGATAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACA--CAACAGCCGGCGTCAGCTCTTCCGGAGCAAGAT-AAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACACAACAGCCGGCGTCAGCTCTT---CCGGAGCAAGATAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTG-CGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagaGAGATGCTGAAGGACCCCTTCGTGCCGGTTCAAATTCATTTCACCACCCACCAACTTCATTC-CCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTG-CGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagaGAGATGCTGAAGGACCCCTTCGTGCCGGTTCAAATTCATTTCACCACCCACCAACTTC-ATTCCCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCCCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTG-CGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCCGGTTCAAATTCATTTCACCACCCACCAACTTCATTC-CCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTG-CGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCCGGTTCAAATTCATTTCACCACCCACCAACTTCATTC-CCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCCCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCCCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCCCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGC-TCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCCTCTGGACCACAACGGCCTCACAGCTTCTTAA-GGCATTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGC-TCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCCTCTGGACCACAACGGCCTCACAGCTTC-TTAAGGCATTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCCTCTGGACCACAACGGCCTCACAGCTTCTTAAGGCATTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGC-TCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCCTCTGGACCACAACGGCCTCACAGCTTCTTA-AGGCATTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAG-CTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCCTCTGGACCACAACGGCCTCACAGCTTCTTA-AGGCATTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCCTCTGGACCACAACGGCCTCACAGCTTCTTAAGGCATTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCCTCTGGACCACAACGGCCTCACAGCTTCTTAAGGCATTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCCTCTGGACCACAACGGCCTCACAGCTTCTTAAGGCATTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt #### Cdca5_ID1428_2 --> 2 - 0 Original Alignment ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCG-TCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagggCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCACTCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCT-TGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from CESAR ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCG-TCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagggCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCACTCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTC-TTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Spaln_aa2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCG-TCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCAcTCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTT-GAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Spaln_nt2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCG-TCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCACTCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCT-TGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Pairagon GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCG-TCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCACTCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCT-TGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Exonerate_protein2genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCACTCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Exonerate_coding2genome agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagggccaaggactttgctaactcagccttcagagtcactcaaaacgcaagtcaggttcagacctcacaaactcattcttgaaacctggcaaagggtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from GeneWise agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagggccaaggactttgctaactcagccttcagagtcactcaaaacgcaagtcaggttcagacctcacaaactcattcttgaaacctggcaaagggtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa aggctgttctcaatgggcagatacctgattgtctccttgccatctgccagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAagtgtgttgataaatttaataatcatcttagtggctgtttccactcatatg Alignment from CESAR GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa aggctgttctcaatgggcagatacctgattgtctccttgccatctgccagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGA-GTGGAGGTTTAGAAagtgtgttgataaatttaataatcatcttagtggctgtttccactcatatg Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctgattgtctccttgccatctgccagGGACTGAGTAAATCAACCTCTcCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT-GGAGGTTTAGAAAgtgtgttgataaatttaataatcatcttagtggctgtttccactcatatg Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTT-TGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctgattgtctccttgccatctgccagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAAgtgtgttgataaatttaataatcatcttagtggctgtttccactcatatg Alignment from Pairagon GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctgattgtctccttgccatctgccagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAG-TGGAGGTTTAGAAAgtgtgttgataaatttaataatcatcttagtggctgtttccactcatatg Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGA--GATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctgattgtctccttgccatctgccagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT---GGAGGTTTAGAAAgtgtgttgataaatttaataatcatcttagtggctgtttccactcatatg Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCT-TTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGA--GATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctgattgtctccttgccatctgccagGGACTGAGTAAATCAACCTCTCCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGT---GGAGGTTTAGAAAgtgtgttgataaatttaataatcatcttagtggctgtttccactcatatg Alignment from GeneWise aggctgttctcaatgggcagatacctgattgtctccttgccatctgccagggactgagtaaatcaacctctcctggtgcacctgtctcttgcaaattgcccaattggagtggaggtttagaaagtgtgttgataaatttaataatcatcttagtggctgtttccactcatatg #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCA-GGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACC-AGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGcCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCAG-GTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCA-GGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCA-GGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACC--ATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCAG---GTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAG-CCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACC--ATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCAG---GTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCAGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGA-CCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccataggtgtaatctcttactctttattttcaggtGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGA-CAAAGAAGAAAAAGGGGATAAAggcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from CESAR gtGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccataggtgtaatctcttactctttattttcaggtGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAG-GGACAAAGAAGAAAAAGGGGATAAAggcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGACAAAGAAGAAAAAGGGGATAAAGgcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGG-ACAAAGAAGAAAAAGGGGATAAAGgcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Pairagon GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGG-ACAAAGAAGAAAAAGGGGATAAAGgcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAA---G ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGACAAAGAAGAAAAAGGGGATAAAGGCAGgtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCT-GGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAA---G ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGACAAAGAAGAAAAAGGGGATAAAGGCAGgtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from GeneWise GCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAGGT- ttttgcctcttactcatccataggtgtaatctcttactctttattttcaggtgacagggacccagCTAGGCCCACAAGGCCCACCAGGGCAACCTGGTCCCAGAGGGACAAAGAAGAAAAAGGGGATAAAGGCAGgtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTC-TCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aggttctgccctgcttcatgttctttcttttttttcttttctcattccagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACA-TGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAagtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTC-TCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aggttctgccctgcttcatgttctttcttttttttcttttctcattccagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCCTCAACAGCTTTGTCTACGTATGCAGCGGAAAAC-ATGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAagtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACATGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTC-TCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACA-TGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGT-CTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACA-TGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACATGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACATGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACATGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAG-TACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctaggaAACGATGTGTGGCAACGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTT-AGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from CESAR ggAACGATGTGTGGCAG-TACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctaggaAACGATGTGTGGCAACGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCT-TAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAG-TACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAcGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTA-GGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGT-ACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAACGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGT-CCTTAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Pairagon GGAACGATGTGTGGCAGT-ACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAACGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGT-CCTTAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAACGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAACGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAACGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGT-CCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt gtgttgacttggaatgcagccgtgatcagctgggttcttgtgcccttcaggtGGTAACATCAGGACATATCTGCTAGGAGTTCAGGGGCCCCCCTGGA------------CCTGGATCTG-CATCACCATCAAGGGAGAGACTTTTGATTATTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGAtgtcagtccttaaaaacttctgggtttttcccttctatctttattccaatt Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAG-GGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt gtgttgacttggaatgcagccgtgatcagctgggttcttgtgcccttcaggtGGTAACATCAGGACATATCTGCTAGGAGTTCAGGGGCCCCCCTGGA------------CCTGGATCT-GCATCACCATCAAGGGAGAGACTTTTGATTATTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGAtgtcagtccttaaaaacttctgggtttttcccttctatctttattccaatt Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT gtgttgacttggaatgcagccgtgatcagctgggttcttgtgcccttcagGTGGTAACATCAGGACATATCTGCTAGGAGTTCAGGGGCCCCCCTGG------------ACCTGGATCTGCATCACCATCAAGGGAGAGACTTTTGATTATTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtcagtccttaaaaacttctgggtttttcccttctatctttattccaatt Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT gtgttgacttggaatgcagccgtgatcagctgggttcttgtgcccttcagGTGGTAACATCAGGACATATCTGCTAGGAGTTCAGG--------GGCCCCCCTGG---ACCTGGATCTG-CATCACCATCAAGGGAGAGACTTTTGATTATTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtcagtccttaaaaacttctgggtttttcccttctatctttattccaatt Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTG-----TCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT gtgttgacttggaatgcagccgtgatcagctgggttcttgtgcccttcagGTGGTAACATCAGGACATATCTGCTAGGAGTTCAGG-----------------GGCCCCCCTGGACCTGGATCTGCATCACCATCAAGGGAGAGACTTTTGATTATTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtcagtccttaaaaacttctgggtttttcccttctatctttattccaatt Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT gtgttgacttggaatgcagccgtgatcagctgggttcttgtgcccttcagGTGGTAACATCAGGACATATCTGCTAGGAGTTCAG---------GGGCCCCCCTGGACCTGGATCTGC---ATCACCATCAAGGGAGAGACTTTTGATTATTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtcagtccttaaaaacttctgggtttttcccttctatctttattccaatt Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT gtgttgacttggaatgcagccgtgatcagctgggttcttgtgcccttcagGTGGTAACATCAGGACATATCTGCTAGGAGTTCAG---------GGGCCCCCCTGGACCTGGATCTGC---ATCACCATCAAGGGAGAGACTTTTGATTATTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtcagtccttaaaaacttctgggtttttcccttctatctttattccaatt Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT gtgttgacttggaatgcagccgtgatcagctgggttcttgtgcccttcagGTGGTAACATCAGGACATATCTGCTAGGAGTTCAGGGGCCCCCCTGG------------ACCTGGATCTGCATCACCATCAAGGGAGAGACTTTTGATTATTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtcagtccttaaaaacttctgggtttttcccttctatctttattccaatt #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACT-GTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagaaGGATCCTCAACAATCACTCGTACCTGGACCTCCCGGACCTTCTGGTGCCATGGGTCCTCCTG-GCCTCCAGGGACACTGggtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from CESAR agGGATCATCAACAATCACT-GTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagaaGGATCCTCAACAATCACTCGTACCTGGACCTCCCGGACCTTCTGGTGCCATGGGTCCTCCTG-GCCTCCAGGGACACTGggtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACT-GTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACG---CCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTcGTACCTGGACCTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGCCTCCAGGGACACTGGGTAAgtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACT-GTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTCGTACCTGGACCTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGG-CCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Pairagon AGGGATCATCAACAATCACT-GTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTCGTACCTGGACCTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGG-CCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACT-GTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCA taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTCGTACCTGGACCTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGCCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from Exonerate_coding2genome AGGGATCATCAACAATCACT-GTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCA taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagAAGGATCCTCAACAATCACTCGTACCTGGACCTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGCCTCCAGGGACACTGGgtaagtctattctgctttttcccaacaaatcaacaacagtttacataaat Alignment from GeneWise GCTCCCGGCAGAGTCATGACTTCAGAGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAGGT- taggttatgatagcttcacatggcatgtcttcgttcccttttctttccagaagGATCCTCAACAATCACTC---------------------------GTACCTGGACCTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGCCTCCAGGGACACTGGGTAAgtctattctgctttttcccaacaaatcaacaacagtttacataaat #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcaggaGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGAC-CAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcaggaGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCA-GTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAG-GCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACC-AGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACC-AGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Exonerate_protein2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Exonerate_coding2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from GeneWise GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGAC-ACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagctTCTTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCGGCGTATGCTGCTG-CACCTGTCTGAAGGCAGATGTGAATggtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from CESAR ctTCCTTTTCAGAAGAC-ACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagctTCTTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCGGCGTATGCTGCT-GCACCTGTCTGAAGGCAGATGTGAATggtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Spaln_aa2Genome CACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagcttctttctcagaagagCACACTGAAAAAGGAGAAGCAGGCGGCGTATGCTGCTGC-ACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGA-CACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCGGCGTATGCTGCTG-CACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Pairagon CTTCCTTTTCAGAAGA-CACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCGGCGTATGCTGCTG-CACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCGGCGTATGCTGCTGCACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGA-CACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCGGCGTATGC-TGCTGCACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtatacagacagtgcacttaagcatttcttctttgtgttcccagCTTCTTTCTCAGAAGAGCACACTGAAAAAGGAGAAGCAGGCGGCGTATGCTGCTGCACCTGTCTGAAGGCAGATGTGAATGgtgaggcaatagcagccactgagtgcacaaacctgcaccttatttttctt #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGCGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTC-GGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from CESAR ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGCGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTT-CGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGcGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCG-GATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGCGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTC-GGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Pairagon ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGCGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTC-GGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT--CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGCGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCG---GATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAG-GCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT--CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGCGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCG---GATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from GeneWise ----GGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGCGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCG-GATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGAT-GAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATCGAACCC---CACATCCATTTTTTGAACACAT-TGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCaggtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGAT--CGAACCCCACATCCATTTTTTGAACACA-TTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCaggtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATCGAACCCCACAT---CCATTTTTTGAACACATTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATCGAACCCC--ACATCCATTTTTTGAACACA-TTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGAT-GAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATCGAACCCC---ACATCCATTTTTTGAACACA-TTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATCGAACCCCACAT---CCATTTTTTGAACACATTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATCGAACCCCACAT---CCATTTTTTGAACACATTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATCGAACCCCACAT---CCATTTTTTGAACACATTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt #### Crtac1_ID8462_10 --> 2 - 0 Original Alignment ggGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATC-TTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagggGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTT-CCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from CESAR ggGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATC-TTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagggGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTA-TTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Spaln_aa2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTG-TCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCCTTgTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTAT-TTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Spaln_nt2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATC-TTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTAT-TTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Pairagon GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCAT-CTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTAT-TTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Exonerate_protein2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Exonerate_coding2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from GeneWise GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTG-TATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acaggaacagacaacttccagattgccaccctcccccaactgcgctccagatGCAGATGACACACGGGTGCCTGGCACACTCCTCCTACACAGTAACTGCCTGTGCTGTCCTGCTGT-TGCACTGGTGCTCGGAGTGACTTGCAGGaggtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTG-TATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acaggaacagacaacttccagattgccaccctcccccaactgcgctccagatGCAGATGACACACGGGTGCCTGGCACACTCCTCCTACACAGTAACTGCCTGTGCTGTCCTGCTG-TTGCACTGGTGCTCGGAGTGACTTGCAGGaggtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCCTACACAGTAACTGCCTGTGCTGTCCTGCTGTTGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTG-TATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCCTACACAGTAACTGCCTGTGCTGTCCTGCTGT-TGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCT-GTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCCTACACAGTAACTGCCTGTGCTGTCCTGCTGT-TGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCCTACACAGTAACTGCCTGTGCTGTCCTGCTGTTGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Exonerate_coding2genome acaggaacagacaacttccagattgccaccctcccccaactgcgctccagatgcagatgacacacgggtgcctggcacactcctcctacacagtaactgcctgtgctgtcctgctgttgcactggtgctcggagtgacttgcaggaggtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCCTACACAGTAACTGCCTGTGCTGTCCTGCTGTTGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCC-AGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg aaagataagttcttactcccagccctatccttgtggccatctattaatagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTCAGTCCTGCTCCCCATGGATGGCACAGGGTCA-AGTCCGGGCAGGTGACACTAGGATGAAGCACTGGGGGAAATGG------GCGCAGCCTCTTggtatgtataggtgtaatgattcattcccccaaatatatgcctgctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCC-AGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg aaagataagttcttactcccagccctatccttgtggccatctattaatagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTCAGTCCTGCTCCCCATGGATGGCACAGGGTCA-AGTCCGGGCAGGTGACACTAGGATGAAGCACTGGGGGAAATGG------GCGCAGCCTCTTggtatgtataggtgtaatgattcattcccccaaatatatgcctgctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG aaagataagttcttactcccagccctatccttgtggccatctattaatagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTCAGTCCTGCTCCCCATGGATGGCACAGGGTCAAGTCCGGGCAGGTGACACTAGGATGAAGCACTGGGGGAAATGG------GCGCAGCCTCTTGgtatgtataggtgtaatgattcattcccccaaatatatgcctgctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCC-CAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG aaagataagttcttactcccagccctatccttgtggccatctattaatagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTCAGTCCTGCTCCCCATGGATGGCACAGGGTCAA-GTCCGGGCAGGTGACACTAGGATGAAGCACTGGGGGAAATGG------GCGCAGCCTCTTGgtatgtataggtgtaatgattcattcccccaaatatatgcctgctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCC-CAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG aaagataagttcttactcccagccctatccttgtggccatctattaatagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTCAGTCCTGCTCCCCATGGATGGCACAGGGTCAA-GTCCGGGCAGGTGACACTAGGATGAAGCACTGGGGGAAATGG------GCGCAGCCTCTTGgtatgtataggtgtaatgattcattcccccaaatatatgcctgctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG aaagataagttcttactcccagccctatccttgtggccatctattaatagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTCAGTCCTGCTCCCCATGGATGGCACAGGGTCAAGTCCGGGCAGGTGACACTAGGATGAAGCACTGGGGGAAATGG------GCGCAGCCTCTTGgtatgtataggtgtaatgattcattcccccaaatatatgcctgctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG aaagataagttcttactcccagccctatccttgtggccatctattaatagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTCAGTCCTGCTCCCCATGGATGGCACAGGGTCAAGTCCGGGCAGGTGACACTAGGATGAAGCACTGGGGGAAATGG------GCGCAGCCTCTTGgtatgtataggtgtaatgattcattcccccaaatatatgcctgctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG aaagataagttcttactcccagccctatccttgtggccatctattaatagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTCAGTCCTGCTCCCCATGGATGGCACAGGGTCAAGTCCGGGCAGGTGACACTAGGATGAAGCACTGGGGGAAATGG------GCGCAGCCTCTTGgtatgtataggtgtaatgattcattcccccaaatatatgcctgctgtcca #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGT-GACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagagCGTCTTGGTCCTCCATGTCGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTG-GTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from CESAR agCGACTCGGTCCCCCACGT-GACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagagCGTCTTGGTCCTCCATGTCGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACT-GGTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGT-GACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTcGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGG-TCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGT-GACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTCGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTG-GTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Pairagon AGCGACTCGGTCCCCCACGT-GACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTCGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTG-GTCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCA-CGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACC--GTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTCGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGG---TCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCA-CGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACC--GTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTCGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGG---TCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca Alignment from GeneWise AGCGACTCGGTCCCCCA-CGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagctttcacatgtttggtctttgttttccaccttactttgtagAGCGTCTTGGTCCTCCATGTCGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGG-TCGTGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtaaactagagcttcttctttctgggaaagcataggggatgctatgccca #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGA-GCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac acagaagtagtactggattgcacccaagaacaattttcttgttcccacaggcACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGACGCTTCACGCTTTCTCTCCTGTGCTTGGCGAG-GGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGA-GCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac acagaagtagtactggattgcacccaagaacaattttcttgttcccacaggcACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGACGCTTCACGCTTTCTCTCCTGTGCTTGGCGA-GGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGACGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGA-GCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGACGCTTCACGCTTTCTCTCCTGTGCTTGGCGAG-GGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGA-GCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGACGCTTCACGCTTTCTCTCCTGTGCTTGGCGAG-GGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGACGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Exonerate_coding2genome acagaagtagtactggattgcacccaagaacaattttcttgttcccacaggcactgcaggcacaggggcagagaatctgatctgtgagattcgacgcttcacgctttctctcctgtgcttggcgagggggccagctgcaccggcagatgtccagcactcactgcaggtccttaactcaacgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGACGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACC-TGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCAGCTTTGTCAATGAGggtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from CESAR CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCAC-CTGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCAGCTTTGTCAATGAGggtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCcTGCTGGTTCAGAAGGATGATGGCACTGCACCT-GGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGC-TGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACC-TGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Pairagon CCCTTCGGTTGCCG-CTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACC-TGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCTGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGGCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCTGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCAGCTTTGTCAATGAGGGTATTGGTGGATGTTGGGGGTTCCATGATACCCTTACTACAAAGCTATCA Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCCTGCTGGTTCAGAAGGATGATGGCACTGCACCTGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataaccaaaccagatttgtgaatcaatattttgtttattattattatcagCTCTGTAGTTTTGAAGCCCTTGAAGAACTTAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAG-GAATGCCCAGATCACTggtaagagattgctcaagtagatggggaagaagagatcatacccaagtaag Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataaccaaaccagatttgtgaatcaatattttgtttattattattatcagCTCTGTAGTTTTGAAGCCCTTGAAGAACTTAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCA-GGAATGCCCAGATCACTggtaagagattgctcaagtagatggggaagaagagatcatacccaagtaag Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccagatttgtgaatcaatattttgtttattattattatcagCTCTGTAGTTTTGAAGCCCTTGAAGAACTTAAGcGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGG-AATGCCCAGATCACTGgtaagagattgctcaagtagatggggaagaagagatcatacccaagtaag Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAA-GAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccagatttgtgaatcaatattttgtttattattattatcagCTCTGTAGTTTTGAAGCCCTTGAAGAACTTAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAG-GAATGCCCAGATCACTGgtaagagattgctcaagtagatggggaagaagagatcatacccaagtaag Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGC-TAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccagatttgtgaatcaatattttgtttattattattatcagCTCTGTAGTTTTGAAGCCCTTGAAGAACTTAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAG-GAATGCCCAGATCACTGgtaagagattgctcaagtagatggggaagaagagatcatacccaagtaag Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccagatttgtgaatcaatattttgtttattattattatcagCTCTGTAGTTTTGAAGCCCTTGAAGAACTTAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGGAATGCCCAGATCACTGgtaagagattgctcaagtagatggggaagaagagatcatacccaagtaag Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccagatttgtgaatcaatattttgtttattattattatcagCTCTGTAGTTTTGAAGCCCTTGAAGAACTTAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGGAATGCCCAGATCACTGgtaagagattgctcaagtagatggggaagaagagatcatacccaagtaag Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccagatttgtgaatcaatattttgtttattattattatcagCTCTGTAGTTTTGAAGCCCTTGAAGAACTTAAGCGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGGAATGCCCAGATCACTGgtaagagattgctcaagtagatggggaagaagagatcatacccaagtaag #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGC-AACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCCAATGGGGAGGGCCAGTGG---TTGATCCGAGGAACTCTGC-TTCCCTGTCAGAACAGggtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGC-AACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCCAATGGGGAGGGCCAGTGG---TTGATCCGAGGAACTCTGC-TTCCCTGTCAGAACAGggtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Spaln_aa2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCCAATGGGGAGGGCCA---GTGGTTGATCCGAGGAACTCTGCTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Spaln_nt2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGC-AACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCCAATGGGGAGGGCCAGTGGT---TGATCCGAGGAACTCTGCT-TCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Pairagon ----------------------------------------------CCAGGGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGG-CAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG CCTCAGAGAACCCTAATAGAGCACTCTGCCCCTACCCCCCCGTGCCTCAGGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCCAATGGGGAGGGCCAGTGGT---TGATCCGAGGAACTCTGCT-TCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Exonerate_protein2genome TGAAGAACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgTGCCTCAGGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCCAATGGGGAGGGCCAGTGGTTGATCCGAGGAACTCT---GCTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Exonerate_coding2genome TGAAGAACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgTGCCTCAGGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCCAATGGGGAGGGCCAGTGGTTGATCCGAGGAACTCT---GCTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAG--------------------------------------------------- cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCCAATGGGGAGGGCCAGTGGTTGATCCGAGGAACTCTGCT---TCCCTGTCAGAACAGGGTAAGTATCCTGATCCATTCTGTTTTTATCAGACAAACCCCTCCATAGGG #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAG-GGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGCGGCATGCAAATGGGGACAGTCTTAGCACATT-TCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAG-GGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGCGGCATGCAAATGGGGACAGTCTTAGCACAT-TTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGCGGCATGCAAATGGGGACAGTCTTAGCACATTTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGT------CTTGCTGGTGGGCTTTGGCAAGGAGAAAGAG-GGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGCGGCATGCAAATGGGGACAGTCTTAGCACATT-TCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTG------TCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAG-GGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGCGGCATGCAAATGGGGACAGTCTTAGCACATT-TCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGCGGCATGCAAATGGGGACAGTCTTAGCACATTTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGCGGCATGCAAATGGGGACAGTCTTAGCACATTTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTG------GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGCGGCATGCAAATGGGGACAGTCTTAGCACATTTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTC-CAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcaggtGGTCTGGCCACTGAAAAGGAATTTCCATTCCCAGGGGGAAAGAAAGCCTCACAGATGCTTGG-TAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCTAATAATGAGCAGggtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTC-CAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcaggtGGTCTGGCCACTGAAAAGGAATTTCCATTCCCAGGGGGAAAGAAAGCCTCACAGATGCTTG-GTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCTAATAATGAGCAGggtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATT-CCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCCAGGGGGAAAGAAAGCCTCACAGATG-CTTGGTAAGAAGTATAAGGAAGTGGCATGGATCCAGG------CCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATT-CCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCCAGGGGGAAAGAAAGCCTCACAGATGCTT-GGTAAGAAGTATAAGGAAGTGGCATGGATCCAGG------CCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgagtgcttggcatgggagtttcttgctctgcttccttttctctgtgcagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCTAATAATGAGCAGGgtagggccagggtaagatgggtgagttcatatgacctggatggcaatgga #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCAC-AATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactagccactacctgactcgaaagatcttcactttctttcacaacagagTACACTCATCATCTGAGCATCTTTGCCCACCAACCTAGCTCAGGCTCAAAGGCTACAGCAGG-AGACTTGGGTACTGCTGAGCTTGGAGAGACACCATTCAGTGACCTCAACagtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCAC-AATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tctactagccactacctgactcgaaagatcttcactttctttcacaacagagTACACTCATCATCTGAGCATCTTTGCCCACCAACCTAGCTCAGGCTCAAAGGCTACAGCAGG-AGACTTGGGTACTGCTGAGCTTGGAGAGACACCATTCAGTGACCTCAACagtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACCAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAGACTTGGGTACTGCTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTG-CCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACCAACCTAGCTCAGGCTCAAAGGCTACAGCAG-GAGACTTGGGTACTGCTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCA-CAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACCAACCTAGCTCAGGCTCAAAGGCTACAGC-AGGAGACTTGGGTACTGCTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACCAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAGACTTGGGTACTGCTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACCAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAGACTTGGGTACTGCTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tctactagccactacctgactcgaaagatcttcactttctttcacaacagAGTACACTCATCATCTGAGCATCTTTGCCCACCAACCTAGCTCAGGCTCAAAGGCTACAGCAGGAGACTTGGGTACTGCTGAGCTTGGAGAGACACCATTCAGTGACCTCAACAgtagggaggtttgtgatgggaagacctactatggagacaaacatggggga #### Cyp17a1_ID9994_6 --> 0 - 2 Original Alignment GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGAC-CGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCag attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCCGAACACACCTTCTCACACTGGAGGCCACAATGCGAGAGG-TCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCaggtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from CESAR GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGAC-CGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCag attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCCGAACACACCTTCTCACACTGGAGGCCACAATGCGAGAGG-TCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCaggtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Spaln_aa2Genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCCGAACACACCTTCTCACACTGGAGGCCACAATGCGAGAGGTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Spaln_nt2Genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGA-CTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCCGAACACACCTTCTCACACTGGAGGCCACAATGCGAGAGGT-CTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Pairagon GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGA-CCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCCGAACACACCTTCTCACACTGGAGGCCACAATGCGAGAGGT-CTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Exonerate_protein2genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGAC-CGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAA--GTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCCGAACACACCTTCTCACACTGGAGGCCACAATGCGAGAGGT---CTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Exonerate_coding2genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGAC-CGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAA--GTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCCGAACACACCTTCTCACACTGGAGGCCACAATGCGAGAGGT---CTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from GeneWise GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCCGAACACACCTTCTCACACTGGAGGCCACAATGCGAGAGGTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGA-GACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGACGACATCTTG------GGCGTAGAAACCACTA-TTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGA-GACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGACGACATCTTG------GGCGTAGAAACCACT-ATTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGACGACATCTTGGGCGTAGA------AACCACTATTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGA-GACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGACGACATCTT------GGGCGTAGAAACCACTA-TTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGA-GACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGACGACATCTT------GGGCGTAGAAACCACTA-TTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGACGACATCTTGGGCGT------AGAAACCACTATTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGACGACATCTTGGGCGT------AGAAACCACTATTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGACGACATCTTGGGCGT------AGAAACCACTATTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTC-ATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCCATCTACAAGACACATCTGTTTGGCCGGCCAACGGTGCGGG-GATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTC-ATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCCATCTACAAGACACATCTGTTTGGCCGGCCAACGGTGCGG-GGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCCATCTACAAGACACATCTGTTTGGCCGGCCAACGGTGCGGGGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTT-CATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCCATCTACAAGACACATCTGTTTGGCCGGCCAACGGTGCGGG-GATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTT-CATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCCATCTACAAGACACATCTGTTTGGCCGGCCAACGGTGCGGG-GATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTC-ATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGG--GTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCCATCTACAAGACACATCTGTTTGGCCGGCCAACGGTGCGGGG---ATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTC-ATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGG--GTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCCATCTACAAGACACATCTGTTTGGCCGGCCAACGGTGCGGGG---ATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTC-ATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCCATCTACAAGACACATCTGTTTGGCCGGCCAACGGTGCGGGG-ATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAG-CTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCCTAGTGGAGTCATTCGAGGAAATGACCCGCA-TCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgtctggttttctatccaaacagGGTGTT---ACACGCAACA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAG-CTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCCTAGTGGAGTCATTCGAGGAAATGACCCGC-ATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCCTAGTGGAGTCATTCGAGGAAATGACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgtctggttttctatccaaacagGGTGTT---ACACGCAACA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGC-TCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCCTAGTGGAGTCATTCGAGGAAATGACCCGC-ATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTAAGTCATGTCTGGTTTTCTATCCAAACAGGGTGTTA---CACGCAACA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAG-CTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCG-------------------------------GGGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCCTAGTGGAGTCATTCGAGGAAATGACCCGC-ATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTAAGTCATGTCTGGTTTTCTATCCAAACAGGGTGTTA---CACGCAACA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCCTAGTGGAGTCATTCGAGGAAATGACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgtctggttttctatccaaacagGGTGTT---ACACGCAACA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCCTAGTGGAGTCATTCGAGGAAATGACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatgtctggttttctatccaaacagGGTGTT---ACACGCAACA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-GGCGTGAAGGCG---------------------------CGGAACCTTA tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCCTAGTGGAGTCATTCGAGGAAATGACCCGCATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTAAGTCATGTCTGGTTTTCTATCCAAACAGGGTGTTACACGCAACATAA #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATC-CGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtgagacatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAG-TGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from CESAR CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATC-CGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAA-GTGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Spaln_aa2Genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtgagacatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGTGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Spaln_nt2Genome CTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCG-CCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTGTGAGACATTTCAACCTTCGACCTGACACAGGGTGTTA---CACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAG-TGCATTGCAGCTTCTGATCAAGCACTCATGGGA-AGGTGA-AGA-ATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Pairagon CTTTAGCGGCCTGTACCG-------------------------------GGGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGAT-CCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTGTGAGACATTTCAACCTTCGACCTGACACAGGGTGTTA---CACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAG-TGCATTGCAGCTTCTGATCAAGCACTCATGGGA-----------------------AGgtgaagaattggacatacaggtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Exonerate_protein2genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtgagacatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGTGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Exonerate_coding2genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtgagacatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGTGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from GeneWise CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtgagacatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGTGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTG-AATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT atgcttcagggtttgttacacttgcgaatgccgctttgtatactttccagGGCTTACTTTGCAAGAGCAATCAGGATAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTAATTAAGGAGACCCTGCGATTGCAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGA-ATTTGGGCTGAATgtaaccgcactccttgtccactggacatagcccttgctcttgcacactat Alignment from CESAR GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTG-AATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT atgcttcagggtttgttacacttgcgaatgccgctttgtatactttccagGGCTTACTTTGCAAGAGCAATCAGGATAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTAATTAAGGAGACCCTGCGATTGCAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGA-ATTTGGGCTGAATgtaaccgcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Spaln_aa2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTG-AATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT atgcttcagggtttgttacacttgcgaatgccgctttgtatactttccagGGCTTACTTTGCAAGAGCAATCAGGATAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTAATTAAGGAGACCCTGCGATTGcAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGAA-TTTGGGCTGAATgtaaccgcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Spaln_nt2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTG-AATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT atgcttcagggtttgttacacttgcgaatgccgctttgtatactttccagGGCTTACTTTGCAAGAGCAATCAGGATAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTAATTAAGGAGACCCTGCGATTGCAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGA-ATTTGGGCTGAATgtaaccgcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Pairagon GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTG-AATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT atgcttcagggtttgttacacttgcgaatgccgctttgtatactttccagGGCTTACTTTGCAAGAGCAATCAGGATAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTAATTAAGGAGACCCTGCGATTGCAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGAA-TTTGGGCTGAATgtaaccgcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTG-AATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAA atgcttcagggtttgttacacttgcgaatgccgctttgtatactttccagGGCTTACTTTGCAAGAGCAATCAGGATAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTAATTAAGGAGACCCTGCGATTGCAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGAATTTGGGCTGAATgtaaccgcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTG-AATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAA atgcttcagggtttgttacacttgcgaatgccgctttgtatactttccagGGCTTACTTTGCAAGAGCAATCAGGATAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTAATTAAGGAGACCCTGCGATTGCAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGAATTTGGGCTGAATgtaaccgcactccttgtccactggacatagcccttgctcttgcacactat Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGA-TTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT atgcttcagggtttgttacacttgcgaatgccgctttgtatactttccagGGCTTACTTTGCAAGAGCAATCAGGATAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTAATTAAGGAGACCCTGCGATTGCAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGAA-TTTGGGCTGAATgtaaccgcactccttgtccactggacatagcccttgctcttgcacactat #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAG-GACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agtgagagaatgtgtgagtccatcccagtgctctcccgtctctgttgcaggaATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTG-GGAACTTAGGAAGACCAATggtaagccaggtgcagacccagaacctagtgtgattttaatcaagtttttc Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAG-GACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agtgagagaatgtgtgagtccatcccagtgctctcccgtctctgttgcaggaATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTT-GGGAACTTAGGAAGACCAATggtaagccaggtgcagacccagaacctagtgtgattttaatcaagtttttc Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgagagaatgtgtgagtccatcccagtgctctcccgtctctgttgcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGGGAACTTAGGAAGACCAATGgtaagccaggtgcagacccagaacctagtgtgattttaatcaagtttttc Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAG-GACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgagagaatgtgtgagtccatcccagtgctctcccgtctctgttgcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGG-GAACTTAGGAAGACCAATGgtaagccaggtgcagacccagaacctagtgtgattttaatcaagtttttc Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAG-GACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgagagaatgtgtgagtccatcccagtgctctcccgtctctgttgcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTG-GGAACTTAGGAAGACCAATGgtaagccaggtgcagacccagaacctagtgtgattttaatcaagtttttc Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgagagaatgtgtgagtccatcccagtgctctcccgtctctgttgcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGGGAACTTAGGAAGACCAATGgtaagccaggtgcagacccagaacctagtgtgattttaatcaagtttttc Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgagagaatgtgtgagtccatcccagtgctctcccgtctctgttgcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGGGAACTTAGGAAGACCAATGgtaagccaggtgcagacccagaacctagtgtgattttaatcaagtttttc Alignment from GeneWise -------------------------------------------------GGCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG AGTGAGAGAATGTGTGAGTCCATCCCAGTGCTCTCCCGTCTCTGTTGCAGGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGCGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGGGAACTTAGGAAGACCAATGgtaagccaggtgcagacccagaacctagtgtgattttaatcaagtttttc #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCAC-TTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgttacaccaaggttgttcctgtattataacaactcttgtttataggcATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACCTTCTCACTCATGACATTGCGGAATTTAGGTATGG-AAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAGCTGAGAAAGACTAATggtgtgtaaaataaaagggaggtagccaactaggtcttgcaaatcctgtct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCAC-TTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgttacaccaaggttgttcctgtattataacaactcttgtttataggcATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACCTTCTCACTCATGACATTGCGGAATTTAGGTA-TGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAGCTGAGAAAGACTAATggtgtgtaaaataaaagggaggtagccaactaggtcttgcaaatcctgtct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttacaccaaggttgttcctgtattataacaactcttgtttatagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACCTTCTCACTCATGACATTGCGGAATTTAGGTATGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAGCTGAGAAAGACTAATGgtgtgtaaaataaaagggaggtagccaactaggtcttgcaaatcctgtct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCA-CTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttacaccaaggttgttcctgtattataacaactcttgtttatagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACCTTCTCACTCATGACATTGCGGAATTTAGGTAT-GGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAGCTGAGAAAGACTAATGgtgtgtaaaataaaagggaggtagccaactaggtcttgcaaatcctgtct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCA-CTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttacaccaaggttgttcctgtattataacaactcttgtttatagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACCTTCTCACTCATGACATTGCGGAATTTAGGTAT-GGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAGCTGAGAAAGACTAATGgtgtgtaaaataaaagggaggtagccaactaggtcttgcaaatcctgtct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttacaccaaggttgttcctgtattataacaactcttgtttatagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACCTTCTCACTCATGACATTGCGGAATTTAGGTATGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAGCTGAGAAAGACTAATGgtgtgtaaaataaaagggaggtagccaactaggtcttgcaaatcctgtct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttacaccaaggttgttcctgtattataacaactcttgtttatagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACCTTCTCACTCATGACATTGCGGAATTTAGGTATGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAGCTGAGAAAGACTAATGgtgtgtaaaataaaagggaggtagccaactaggtcttgcaaatcctgtct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgttacaccaaggttgttcctgtattataacaactcttgtttatagGCATTGGATTTAGCAATGGAACTGTATGGAAGAACACAAGGCACCTTCTCACTCATGACATTGCGGAATTTAGGTATGGAAAAAGGAGTATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAGCTGAGAAAGACTAATGgtgtgtaaaataaaagggaggtagccaactaggtcttgcaaatcctgtct #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacaggGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGC-ACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from CESAR gATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacaggGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGC-ACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGcGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCA-CGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCA-CGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Pairagon GATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCA-CGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Exonerate_coding2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTAC-ATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACCATAAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCC-GGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from CESAR GGCATGGTACTCTCAGCTGAGTAC-ATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACCATAAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCC-CGGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTAC-ATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACcATAAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCG-GCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTAC-ATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACCATAAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCC-GGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTA-CATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACCATAAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCC-GGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACCATAAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCGGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgctgaagggctaaactgcttcgctctctctccagGACATGGTACTGACAGCTGAGTACCATAAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCGGCTTTTGGGCGAGACCTGgtgagttgctaactatattccacactgaagctggctgaatgcaccatccc #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctaaggtgctggggtctggccataacttattttgcttttagCTAGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCTG-GGCTAGCCTCCTTCCGGTCCTTACGAAAGCTGTTAAGgtgaggcattcagtagtaattgagctgtacaattgagtatccaaggcttc Alignment from CESAR CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctaaggtgctggggtctggccataacttattttgcttttagCTAGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCTG-GGCTAGCCTCCTTCCGGTCCTTACGAAAGCTGTTAAGgtgaggcattcagtagtaattgagctgtacaattgagtatccaaggcttc Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctaaggtgctggggtctggccataacttattttgcttttagCTAGACTCTCTGTGGTCAcGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGG-GCTAGCCTCCTTCCGGTCCTTACGAAAGCTGTTAAGgtgaggcattcagtagtaattgagctgtacaattgagtatccaaggcttc Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctaaggtgctggggtctggccataacttattttgcttttagCTAGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCC-TGGGCTAGCCTCCTTCCGGTCCTTACGAAAGCTGTTAAGgtgaggcattcagtagtaattgagctgtacaattgagtatccaaggcttc Alignment from Pairagon CTGGATTCTCTGTGGGCA-GCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctaaggtgctggggtctggccataacttattttgcttttagCTAGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCC-TGGGCTAGCCTCCTTCCGGTCCTTACGAAAGCTGTTAAGgtgaggcattcagtagtaattgagctgtacaattgagtatccaaggcttc Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctaaggtgctggggtctggccataacttattttgcttttagCTAGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGCTAGCCTCCTTCCGGTCCTTACGAAAGCTGTTAAGgtgaggcattcagtagtaattgagctgtacaattgagtatccaaggcttc Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctaaggtgctggggtctggccataacttattttgcttttagCTAGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGCTAGCCTCCTTCCGGTCCTTACGAAAGCTGTTAAGgtgaggcattcagtagtaattgagctgtacaattgagtatccaaggcttc Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG tgggccctcctaaggtgctggggtctggccataacttattttgcttttagCTAGACTCTCTGTGGTCACGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCTGGGCTAGCCTCCTTCCGGTCCTTACGAAAGCTGTTAAGgtgaggcattcagtagtaattgagctgtacaattgagtatccaaggcttc #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCT-GCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagccATCCAGGGGTGGTTGAAGGAGGGCCCATCCCTGACCAGCCCGCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGG-GAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCT-GCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagccATCCAGGGGTGGTTGAAGGAGGGCCCATCCCTGACCAGCCCGCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTG-GGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCCCTGACCAGCCCGCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTG-CCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCCCTGACCAGCCCGCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGG-GAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCC-TGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCCCTGACCAGCCCGCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGG-GAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCCCTGACCAGCCCGCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCCCTGACCAGCCCGCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGGAGGGCCCATCCCTGACCAGCCCGCACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCC-AAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg tgtatgtctaggccctattgtgtatgaatgttcttcttgtctttccatagatGCTGAGTCAACTGCAAAACCT---TAT---ATGGCCCAAAGTCTCTGTAACTGGGAGGAAACAGATCAGGG-ATCCCCCACAGAGCCACCTGAGTCCCCTGAAGCCACTGTCGCAGGGggtaggaagcccagatcttggcccaaatactaaggtctattggcagctgaa Alignment from CESAR atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCC-AAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg tgtatgtctaggccctattgtgtatgaatgttcttcttgtctttccatagatGCTGAGTCAACTGCAAAA------CCTTATATGGCCCAAAGTCTCTGTAACTGGGAGGAAACAGATCAGG-GATCCCCCACAGAGCCACCTGAGTCCCCTGAAGCCACTGTCGCAGGGggtaggaagcccagatcttggcccaaatactaaggtctattggcagctgaa Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG tgtatgtctaggccctattgtgtatgaatgttcttcttgtctttccatagATGCTGAGTCAACTGCAAAA------CCTTATATGGCCCAAAGTCTCTGTAACTGGGAGGAAACAGATCAGGGATCCCCCACAGAGCCACCTGAGTCCCCTGAAGCCACTGTCGCAGGGGgtaggaagcccagatcttggcccaaatactaaggtctattggcagctgaa Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCC-AAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG tgtatgtctaggccctattgtgtatgaatgttcttcttgtctttccatagATGCTGAGTCAACTGCAAAA------CCTTATATGGCCCAAAGTCTCTGTAACTGGGAGGAAACAGA-TCAGGGATCCCCCACAGAGCCACCTGAGTCCCCTGAAGCCACTGTCGCAGGGGgtaggaagcccagatcttggcccaaatactaaggtctattggcagctgaa Alignment from Pairagon ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGG-CCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG tgtatgtctaggccctattgtgtatgaatgttcttcttgtctttccatagATGCTGAGTCAACTGCAAAA------CCTTATATGGCCCAAAGTCTCTGTAACTGGGAGGAAACAGATCAGGG-ATCCCCCACAGAGCCACCTGAGTCCCCTGAAGCCACTGTCGCAGGGGgtaggaagcccagatcttggcccaaatactaaggtctattggcagctgaa Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG tgtatgtctaggccctattgtgtatgaatgttcttcttgtctttccatagATGCTGAGTCAACTGCAAAA------CCTTATATGGCCCAAAGTCTCTGTAACTGGGAGGAAACAGATCAGGGATCCCCCACAGAGCCACCTGAGTCCCCTGAAGCCACTGTCGCAGGGGgtaggaagcccagatcttggcccaaatactaaggtctattggcagctgaa Alignment from Exonerate_coding2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG tgtatgtctaggccctattgtgtatgaatgttcttcttgtctttccatagATGCTGAGTCAACTGCAAAACCTTAT-----ATGGCCCAAAGTCTCTGTAACTGGGAGGAAACAGATCAGGGATCC-CCCACAGAGCCACCTGAGTCCCCTGAAGCCACTGTCGCAGGGGgtaggaagcccagatcttggcccaaatactaaggtctattggcagctgaa Alignment from GeneWise ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG tgtatgtctaggccctattgtgtatgaatgttcttcttgtctttccatagATGCTGAGTCAACTGCAAAA------CCTTATATGGCCCAAAGTCTCTGTAACTGGGAGGAAACAGATCAGGGATCCCCCACAGAGCCACCTGAGTCCCCTGAAGCCACTGTCGCAGGGGgtaggaagcccagatcttggcccaaatactaaggtctattggcagctgaa #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTG-GGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacaggtTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTCTTTCCGGGAACTGGGTATCATAACCG-TGCTGCCATACGTTTGCTTggtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTG-GGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacaggtTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTCTTTCCGGGAACTGGGTATCATAACC-GTGCTGCCATACGTTTGCTTggtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGTGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTG-GGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTCTTTCCGGGAACTGGGTATCATAACCG-TGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATC-TGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTCTTTCCGGGAACTGGGTATCATAACCG-TGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGTGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGTGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTCGGTGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGTGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAA-CAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttagttctgtgtcttccccttcccttttagCTCAATGTCGATAGCAATGAACCAGGGGTCCTATGTAGTGGCAATGGAAACATTTA-TAATTTAGGACCCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcgggatcccctatgggtcatcccctatggctctgtgtttccgctc Alignment from CESAR CTCAATGTCGACAGCAACGAA-CAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttagttctgtgtcttccccttcccttttagCTCAATGTCGATAGCAATGAACCAGGGGTCCTATGTAGTGGCAATGGAAACATTT-ATAATTTAGGACCCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcgggatcccctatgggtcatcccctatggctctgtgtttccgctc Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttagttctgtgtcttccccttcccttttagCTCAATGTCGATAGCAATGAACCAGGGGTCCTATGTAGTGGCAATGGAAACATTTATAATTTAGGACCCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcgggatcccctatgggtcatcccctatggctctgtgtttccgctc Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAACAAGGC-TCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttagttctgtgtcttccccttcccttttagCTCAATGTCGATAGCAATGAACCAGGGGTCCTATGTAGTGGCAATGGAAACATTTA-TAATTTAGGACCCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcgggatcccctatgggtcatcccctatggctctgtgtttccgctc Alignment from Pairagon CTCAATGTCGACAGCAACGAA-CAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttagttctgtgtcttccccttcccttttagCTCAATGTCGATAGCAATGAACCAGGGGTCCTATGTAGTGGCAATGGAAACATTTA-TAATTTAGGACCCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcgggatcccctatgggtcatcccctatggctctgtgtttccgctc Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttagttctgtgtcttccccttcccttttagCTCAATGTCGATAGCAATGAACCAGGGGTCCTATGTAGTGGCAATGGAAACATTTATAATTTAGGACCCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcgggatcccctatgggtcatcccctatggctctgtgtttccgctc Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttagttctgtgtcttccccttcccttttagCTCAATGTCGATAGCAATGAACCAGGGGTCCTATGTAGTGGCAATGGAAACATTTATAATTTAGGACCCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcgggatcccctatgggtcatcccctatggctctgtgtttccgctc Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG atctgtttattaaggattctttagttctgtgtcttccccttcccttttagCTCAATGTCGATAGCAATGAACCAGGGGTCCTATGTAGTGGCAATGGAAACATTTATAATTTAGGACCCATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgagcgggatcccctatgggtcatcccctatggctctgtgtttccgctc #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTAC-CTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTGTGCCTTGGGAGATGGGGCTCTTT-CTACTTTGGGCTCAATATTGAGACAggtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTAC-CTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTGTGCCTTGGGAGATGGGGCTC-TTTCTACTTTGGGCTCAATATTGAGACAggtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTA-CCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTGTGCCTTGGGAGATGGGGCTCTTT-CTACTTTGGGCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTA-CCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTGTGCCTTGGGAGATGGGGCTC-TTTCTACTTTGGGCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTCTACTTTGGGCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCC-ACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag gtaagagctttgccctgttttgcttccccttggcctccctgcctccacaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACG-CTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAG-CCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag gtaagagctttgccctgttttgcttccccttggcctccctgcctccacaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAAC-GCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAG-CCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGcCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGC-TTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCC-ACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACG-CTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAG-CCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACG-CTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAG-CCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAAC--GTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGC---TTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAG-CCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAAC--GTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGC---TTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG gtaagagctttgccctgttttgcttccccttggcctccctgcctccacagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGCTTTGCTTGCTCTGACCGGCCCACTGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtaaagttcctaagtgtctcaaggaggaggcacatatccttttcatgatt #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagtGCCGCAACCACTGTTGAGCGAACGTCAGCATTTACAGGAGATAGTTCTCTTCC-CCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAggtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from CESAR tGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagtGCCGCAACCACTGTTGAGCGAACGTCAGCATTTACAGGAGATAGTTCTCTTC-CCCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAggtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGCGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCCCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGCGAACGTCAGCATTTACAGGAGATAGTTCTCTTCC-CCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Pairagon TGCTGCCACCACTGATGAG-GAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGCGAACGTCAGCATTTACAGGAGATAGTTCTCTTCC-CCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGCGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCCCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGCGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCCCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG aagagcctgctagggagaattgctctggcaatctcctacgttctcagcagTGCCGCAACCACTGTTGAGCGAACGTCAGCATTTACAGGAGATAGTTCTCTTCCCCTAGGTGAGTTTGTCAATGTGTTCTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtgagggctcaagctcttatgacatggcttgcttatgccatcgctagtac #### Dock8_ID5395_16 --> 0 - 2 Original Alignment GTCATCTTTGGC-AAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttggttgtagagcccaaaaatatcccaaagtctgtttttattctctctagGTGATCTATGGACAAGTCAAGG---CCCGAATTTCTGCAGGAAGTAT-TACAGCTATTACATACCATAACaagtaaaggaataggaatctcagactcctgctatgaaaacctacacattctc Alignment from CESAR GTCATCTTTGGC-AAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttggttgtagagcccaaaaatatcccaaagtctgtttttattctctctagGTGATCTATGGACAAGTCA---AGGCCCGAATTTCTGCAGGAAGTA-TTACAGCTATTACATACCATAACaagtaaaggaataggaatctcagactcctgctatgaaaacctacacattctc Alignment from Spaln_aa2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttggttgtagagcccaaaaatatcccaaagtctgtttttattctctctagGTGATCTATGGACAAGTCAAGGCCCGAATTTCTGCAGGAAGTATT---ACAGCTATTACATACCATAACAAgtaaaggaataggaatctcagactcctgctatgaaaacctacacattctc Alignment from Spaln_nt2Genome GTCATCTTTGG-CAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttggttgtagagcccaaaaatatcccaaagtctgtttttattctctctagGTGATCTATGGACAAGTCAA---GGCCCGAATTTCTGCAGGAAGTAT-TACAGCTATTACATACCATAACAAgtaaaggaataggaatctcagactcctgctatgaaaacctacacattctc Alignment from Pairagon GTCATCTTTGG-CAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttggttgtagagcccaaaaatatcccaaagtctgtttttattctctctagGTGATCTATGGACAAGTCAA---GGCCCGAATTTCTGCAGGAAGTAT-TACAGCTATTACATACCATAACAAgtaaaggaataggaatctcagactcctgctatgaaaacctacacattctc Alignment from Exonerate_protein2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttggttgtagagcccaaaaatatcccaaagtctgtttttattctctctagGTGATCTATGGACAAGTCAAGGCCCGAATTTCTGCAGGAAGTATT---ACAGCTATTACATACCATAACAAgtaaaggaataggaatctcagactcctgctatgaaaacctacacattctc Alignment from Exonerate_coding2genome ttggttgtagagcccaaaaatatcccaaagtctgtttttattctctctaggtgatctatggacaagtcaaggcccgaatttctgcaggaagtattacagctattacataccataacaagtaaaggaataggaatctcagactcctgctatgaaaacctacacattctc Alignment from GeneWise GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttggttgtagagcccaaaaatatcccaaagtctgtttttattctctctagGTGATCTATGGACAAGTCAAGGCCCGAATTTCTGCAGGAAGTATT---ACAGCTATTACATACCATAACAAgtaaaggaataggaatctcagactcctgctatgaaaacctacacattctc #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATG-CGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATG-CGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATG-CGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAA-TGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATG-CGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAG-GCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagccCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGCGCTTGCCAGGTGACCCAGTCTCGAAATGCCA-GACAATGACCACATCTCACctgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAG-GCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagccCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGCGCTTGCCAGGTGACCCAGTCTCGAAATGCCA-GACAATGACCACATCTCACctgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGCGCTTGCCAGGTGACCCAGTCTCGAAATGCCAGACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAG-GCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGCGCTTGCCAGGTGACCCAGTCTCGAAATGCC-AGACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAG-GCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGCGCTTGCCAGGTGACCCAGTCTCGAAATGCCA-GACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGCGCTTGCCAGGTGACCCAGTCTCGAAATGCCAGACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGCGCTTGCCAGGTGACCCAGTCTCGAAATGCCAGACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGCGCTTGCCAGGTGACCCAGTCTCGAAATGCCAGACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGAC-ATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACCATCGTTCCACCAGCAAGTACCTGGGTGT-CCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGAC-ATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACCATCGTTCCACCAGCAAGTACCTGGGTG-TCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACCATCGTTCCACCAGCAAGTACCTGGGTGTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGA-CATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACCATCGTTCCACCAGCAAGTACCTGGGTG-TCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGA-CATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACCATCGTTCCACCAGCAAGTACCTGGGTG-TCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACCATCGTTCCACCAGCAAGTACCTGGGTGTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACCATCGTTCCACCAGCAAGTACCTGGGTGTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACCATCGTTCCACCAGCAAGTACCTGGGTGTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTG-GACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacaggtATGTTCCAGCGGCTGCGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCC-CTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from CESAR ggATGTTTCAGCGATTG-GACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacaggtATGTTCCAGCGGCTGCGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATC-CCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGCGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTG-GACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGCGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCC-CTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Pairagon GGATGTTTCAGCGATTG-GACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGCGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCC-CTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGCGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGCGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from GeneWise ----------------------------------------------ACTGGGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG GAAGAAGGATAAACAAAGCCAGGAGGGATGTCTTTGGATACGGTTTACAGGTATGTTCCAGCGGCTGCGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag #### Efemp2_ID1033_6 --> 2 - 1 Original Alignment atGTGAATGAGTGTGACATGGGAGCCCCATGTGAG-CAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg ggtggtggctgtccatgactttcatctttttactttttatttttcaatagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCA-CCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from CESAR atGTGAATGAGTGTGACATGGGAGCCCCATGTGAG-CAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg ggtggtggctgtccatgactttcatctttttactttttatttttcaatagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGT-GCACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Spaln_aa2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAG-CAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGcCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAC-CAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Spaln_nt2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAG-CAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTG-CACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Pairagon ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAG-CAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGC-ACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Exonerate_protein2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAG-CAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGT--AACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAC---CAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Exonerate_coding2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAG-CAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGT--AACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAC---CAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from GeneWise ATGTGAATGAGTGTGACATGGGAGCCCCATGT-GAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAC-CAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc #### Efemp2_ID1034_7 --> 2 - 1 Original Alignment atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGC-CGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg cctcaaattttccccactaccaatgatctgttctccactttgtctttcagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCCAATTCTCCTGCCACTGCCCACAGGGCTACC-GCTGTTGGCAACAAGGCTCTGCCAAggtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from CESAR atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGC-CGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg cctcaaattttccccactaccaatgatctgttctccactttgtctttcagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCCAATTCTCCTGCCACTGCCCACAGGGCTAC-CGCTGTTGGCAACAAGGCTCTGCCAAggtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Spaln_aa2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCCAATTCTCCTGCCACTGCCCACAGGGCTACCGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Spaln_nt2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGA-TTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCCAATTCTCCTGCCACTGCCCACAGGGCTACC-GCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Pairagon ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGG-CCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCCAATTCTCCTGCCACTGCCCACAGGGCTACC-GCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Exonerate_protein2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCCAATTCTCCTGCCACTGCCCACAGGGCTACCGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Exonerate_coding2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCCAATTCTCCTGCCACTGCCCACAGGGCTACCGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from GeneWise ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCCAATTCTCCTGCCACTGCCCACAGGGCTACCGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAAC-TTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggaactaagactcctctggcatttgcgttttgcagatTTAGATGACTGTGAGACAGGTGTTCACCGATGTTCTGAGGCCCAAACTTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTCGAGATCAACC-TTGTGTAGAGCCATATGTTCATGTATCAGACaagtgagtgcacctggcacttgctgacttgcgtaggtcaagatgtcagtggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAAC-TTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggaactaagactcctctggcatttgcgttttgcagatTTAGATGACTGTGAGACAGGTGTTCACCGATGTTCTGAGGCCCAAACTTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTCGAGATCAAC-CTTGTGTAGAGCCATATGTTCATGTATCAGACaagtgagtgcacctggcacttgctgacttgcgtaggtcaagatgtcagtggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggaactaagactcctctggcatttgcgttttgcagATTTAGATGACTGTGAGACAGGTGTTCACCGATGTTCTGAGGCCCAAACTTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTCGAGATCAACCTTGTGTAGAGCCATATGTTCATGTATCAGACAAgtgagtgcacctggcacttgctgacttgcgtaggtcaagatgtcagtggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAA-CTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggaactaagactcctctggcatttgcgttttgcagATTTAGATGACTGTGAGACAGGTGTTCACCGATGTTCTGAGGCCCAAACTTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTCGAGATCAACCT-TGTGTAGAGCCATATGTTCATGTATCAGACAAgtgagtgcacctggcacttgctgacttgcgtaggtcaagatgtcagtggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAA-CTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggaactaagactcctctggcatttgcgttttgcagATTTAGATGACTGTGAGACAGGTGTTCACCGATGTTCTGAGGCCCAAACTTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTCGAGATCAACC-TTGTGTAGAGCCATATGTTCATGTATCAGACAAgtgagtgcacctggcacttgctgacttgcgtaggtcaagatgtcagtggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggaactaagactcctctggcatttgcgttttgcagATTTAGATGACTGTGAGACAGGTGTTCACCGATGTTCTGAGGCCCAAACTTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTCGAGATCAACCTTGTGTAGAGCCATATGTTCATGTATCAGACAAgtgagtgcacctggcacttgctgacttgcgtaggtcaagatgtcagtggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggaactaagactcctctggcatttgcgttttgcagATTTAGATGACTGTGAGACAGGTGTTCACCGATGTTCTGAGGCCCAAACTTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTCGAGATCAACCTTGTGTAGAGCCATATGTTCATGTATCAGACAAgtgagtgcacctggcacttgctgacttgcgtaggtcaagatgtcagtggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggaactaagactcctctggcatttgcgttttgcagATTTAGATGACTGTGAGACAGGTGTTCACCGATGTTCTGAGGCCCAAACTTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTCGAGATCAACCTTGTGTAGAGCCATATGTTCATGTATCAGACAAgtgagtgcacctggcacttgctgacttgcgtaggtcaagatgtcagtggg #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAG-GAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagaaTGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGCGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCC-GGATCTAGATCAGAAGGAGCGGgtgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAG-GAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagaaTGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGCGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCC-GGATCTAGATCAGAAGGAGCGGgtgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAG-GAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGcGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCG-GATCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAG-GAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGCGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCC-GGATCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAG-GAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGCGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCC-GGATCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGCGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGATCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGCGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGATCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttgatagaagggctgaagaagtcccattgtttctcatcttttttagAATGGCATAAAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTGGAGCGAGCTCGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGATCTAGATCAGAAGGAGCGGGTgtgggggtctgagcatccttggtcctggggagcccccattgaggagtccc #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAA-GCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAACGCCCTAGAGCAAGAACAGGGACAGGTCGATG-CAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAggtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from CESAR CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAA-GCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAACGCCCTAGAGCAAGAACAGGGACAGGTCGAT-GCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAggtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Spaln_aa2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAACGCCCTAGAGCAAGAACAGGGACAGGTCGATGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Spaln_nt2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAA-GCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAACGCCCTAGAGCAAGAACAGGGACAGGTCGAT-GCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Pairagon CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAA-GCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAACGCCCTAGAGCAAGAACAGGGACAGGTCGAT-GCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAACGCCCTAGAGCAAGAACAGGGACAGGTCGATGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Exonerate_coding2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAACGCCCTAGAGCAAGAACAGGGACAGGTCGATGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAACGCCCTAGAGCAAGAACAGGGACAGGTCGATGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAA-GACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagctGCCAGACCCTCTAGTGCTGAACGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCC-AGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAaggtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAA-GACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagctGCCAGACCCTCTAGTGCTGAACGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGC-CCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAaggtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagCTGCCAGACCCTCTAGTGCTGAACGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAAGgtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAA-GACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagCTGCCAGACCCTCTAGTGCTGAACGACACCAGTCCTGCTCCGGTAAGTGCCCCTGC-GCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGG---GGTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAAGgtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAA-GACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagCTGCCAGACCCTCTAGTGCTGAACGACACCAGTCCTGCTCCGGTAAGTGCCCCTGC-GCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGG---GGTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAAGgtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Exonerate_protein2genome gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagctgccagaccctctagtgctgaacgacaccagtcctgctccggtaagtgcccctgcgccccagttagagctttccggggccaaggggatccaactgccatgactgatggggtggggcctgagaccctagagcccccagcaactccacctgagacaaggtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Exonerate_coding2genome gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagctgccagaccctctagtgctgaacgacaccagtcctgctccggtaagtgcccctgcgccccagttagagctttccggggccaaggggatccaactgccatgactgatggggtggggcctgagaccctagagcccccagcaactccacctgagacaaggtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagCTGCCAGACCCTCTAGTGCTGAACGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAAGgtaactatcatctcagcttctttgagctagaagaggataccacacatccc #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAG-CGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCCGGAAAGTATTAGCAACAGTTGGTGTCAATT-AGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTCAAAGTTGTGCATGCCGAGCTTAGCCTCACACTTGCAGTC---CTTCTACAAGAAGGCCGTGCCacgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from CESAR GAGTCCAAGGGACAG-CGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCCGGAAAGTATTAGCAACAGTTGGTGTCA-ATTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTCAAAGTTGTGCATGCCGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCacgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Spaln_aa2Genome GAGTCCAAGGGACAG-CGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGcCGGAAAGTATTAGCAACAGTTGGTGTCAA-TTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTCAAAGTTGTGCATGCCGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCACgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGC-GGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCCGGAAAGTATTAGCAACAGTTGGTGTCAA-TTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTCAAAGTTGTGCATGCCGAGCTTAGCCTCACACT---TGCAGTCCTTCTACAAGAAGGCCGTGCCACgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Pairagon GAGTCCAAGGGACAG-CGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCCGGAAAGTATTAGCAACAGTTGGTGTCAA-TTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTCAAAGTTGTGCATGCCGAGCTTAGCCTCACACT---TGCAGTCCTTCTACAAGAAGGCCGTGCCACgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Exonerate_protein2genome ctcccccacccctgccagatcagagaagtcaacctttattgttcccacaggagtcaaagggacagccggaaagtattagcaacagttggtgtcaattagaccatcatgcagggcccatacctgcccagatctcacttcaactgcggcagaagcccaagtctgtcaaagttgtgcatgccgagcttagcctcacacttgcagtccttctacaagaaggccgtgccacgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from Exonerate_coding2genome ctcccccacccctgccagatcagagaagtcaacctttattgttcccacaggagtcaaagggacagccggaaagtattagcaacagttggtgtcaattagaccatcatgcagggcccatacctgcccagatctcacttcaactgcggcagaagcccaagtctgtcaaagttgtgcatgccgagcttagcctcacacttgcagtccttctacaagaaggccgtgccacgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC ctcccccacccctgccagatcagagaagtcaacctttattgttcccacagGAGTCAAAGGGACAGCCGGAAAGTATTAGCAACAGTTGGTGTCAATTAGACCATCATGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTCAAAGTTGTGCATGCCGAGCTTAGCCTCACACTTGCA---GTCCTTCTACAAGAAGGCCGTGCCACgtaatggcagaccaatcctctgtctggcacttgggcttgtcagcaggcat #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACT-CCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCCAGGGAACAATTTGCACGAGGTGGAAACTGCTC-GGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from CESAR GTCCTCAGGACT-CCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCCAGGGAACAATTTGCACGAGGTGGAAACTGCT-CGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Spaln_aa2Genome GAGAGTGAGGAGGAGAGTGAAGAAGACGAGGAGGAGGAGGAGGAGGCAGCC tgtccctggtcatagtacagctggtggcttaattttttcctttctgcacag Alignment from Spaln_nt2Genome GTCCTCAGGACTCCT-GGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCCAGGGAACAATTTGCACGAGGTGGAAACTGCTC-GGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Pairagon GTCCTCAGGACTCCT-GGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCCAGGGAACAATTTGCACGAGGTGGAAACTGCTC-GGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCCAGGGAACAATTTGCACGAGGTGGAAACTGCTCGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCCAGGGAACAATTTGCACGAGGTGGAAACTGCTCGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttctgaataatgagctggctggatgattaattggtatattctccagGTCCTCAGGACCCCCAGGGAACAATTTGCACGAGGTGGAAACTGCTCGGGGCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtacagtctatttgcttttctcactaccaaagactctcagccaacatgat #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAG-ATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatattgactcatgctcctcatcacaactctgacttgttactatctgtagggGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTAAGGCAGAGCATCTCATTTGTACTCTGCAAGAACCATGTCC-CACCCTACAGAAGGAAGGCCAAtggtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAG-ATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg aatattgactcatgctcctcatcacaactctgacttgttactatctgtagggGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTAAGGCAGAGCATCTCATTTGTACTCTGCAAGAACCATGTC-CCACCCTACAGAAGGAAGGCCAAtggtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTAAGGCAGAGCATCTCATTTGTACTCTGCAAGAACCATGTCCCACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAG-ATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTAAGGCAGAGCATCTCATTTGTACTCTGCAAGAACCATGTCC-CACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAG-ATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTAAGGCAGAGCATCTCATTTGTACTCTGCAAGAACCATGTCC-CACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTAAGGCAGAGCATCTCATTTGTACTCTGCAAGAACCATGTCCCACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTAAGGCAGAGCATCTCATTTGTACTCTGCAAGAACCATGTCCCACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG aatattgactcatgctcctcatcacaactctgacttgttactatctgtagGGGACTTCCTCATTGTTGAACCTTTTGAAGGTGGTGAGAAAGTTAAGGCAGAGCATCTCATTTGTACTCTGCAAGAACCATGTCCCACCCTACAGAAGGAAGGCCAATGgtaatgtagtctccctgtgcccctgtccagcaataagagactgttagtag #### Eif3a_ID13316_14 --> 0 - 0 Original Alignment ATTGACTATTTTGAGAGAGCTAAGCGT-TTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAA---------------GAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCCTTGGAGGAAATTCCTCTAATAAAGAGTGCATACG-AGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGGTAAAAGATGAAAGGgtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from CESAR ATTGACTATTTTGAGAGAGCTAAGCGT-TTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCCTTGGAGGAAATTCCTCTAATAAAGAGTGCATACG-AGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Spaln_aa2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCCTTGGAGGAAATTCCTCTAATAAAGAGTGCATACGAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Spaln_nt2Genome ATTGACTATTTTGAGAGAGCTAAGCGT-TTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCCTTGGAGGAAATTCCTCTAATAAAGAGTGCATACGA-GAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Pairagon ATTGACTATTTTGAGAGAGCTAAGCG-TTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCCTTGGAGGAAATTCCTCTAATAAAGAGTGCATACGA-GAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Exonerate_protein2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCCTTGGAGGAAATTCCTCTAATAAAGAGTGCATACGAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Exonerate_coding2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCCTTGGAGGAAATTCCTCTAATAAAGAGTGCATACGAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from GeneWise ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCCTTGGAGGAAATTCCTCTAATAAAGAGTGCATACGAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATT-ATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTCATGGCCAAACAGGTAGAGCAGCTGGAAAAGG-AAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATT-ATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTCATGGCCAAACAGGTAGAGCAGCTGGAAAAGG-AAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATT-ATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTcATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAGAAG-GAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATT-ATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTCATGGCCAAACAGGTAGAGCAGCTGGA-AAAGGAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATT-ATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTCATGGCCAAACAGGTAGAGCAGCTGGA-AAAGGAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTCATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTCATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACTTTATTCATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACT-CTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacagtctcaacatacagtgacaagtgctgtcatgagatagGTACGTATAGACCATACCTCCCGGACCCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAG-AGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGACCTGCACACATTTTGgtgagtatctagggaagggatgatttgcacaaggattaatatcgtggggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACT-CTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacagtctcaacatacagtgacaagtgctgtcatgagatagGTACGTATAGACCATACCTCCCGGACCCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAG-AGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGACCTGCACACATTTTGgtgagtatctagggaagggatgatttgcacaaggattaatatcgtggggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACT-CTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacagtctcaacatacagtgacaagtgctgtcatgagatagGTACGTATAGACCATACCTCCCGGACCcCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGA-GATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGACCTGCACACATTTTGgtgagtatctagggaagggatgatttgcacaaggattaatatcgtggggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTC-TGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacagtctcaacatacagtgacaagtgctgtcatgagatagGTACGTATAGACCATACCTCCCGGACCCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAG-AGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGACCTGCACACATTTTGgtgagtatctagggaagggatgatttgcacaaggattaatatcgtggggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGA-CTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacagtctcaacatacagtgacaagtgctgtcatgagatagGTACGTATAGACCATACCTCCCGGACCCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAG-AGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGACCTGCACACATTTTGgtgagtatctagggaagggatgatttgcacaaggattaatatcgtggggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacagtctcaacatacagtgacaagtgctgtcatgagatagGTACGTATAGACCATACCTCCCGGACCCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGACCTGCACACATTTTGgtgagtatctagggaagggatgatttgcacaaggattaatatcgtggggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCT---GAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacagtctcaacatacagtgacaagtgctgtcatgagatagGTACGTATAGACCATACCTCCCGGACC--CCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGA-GATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGACCTGCACACATTTTGgtgagtatctagggaagggatgatttgcacaaggattaatatcgtggggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttggcttaacagtctcaacatacagtgacaagtgctgtcatgagatagGTACGTATAGACCATACCTCCCGGACCCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAGATGCCCCAGTCGGCCCACATCTGCAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGACCTGCACACATTTTGgtgagtatctagggaagggatgatttgcacaaggattaatatcgtggggg #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGC-TCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tagaattagtccaatgtgttgggtattagacttgctggtctttctcacagtAGCATTACAGTCCCGCCAGGGCTGCCACCGACCTGTAGTCCTTCCCTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCTCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGAGCAGCAAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGACTCACCTGGGCCTCCAGGGATCCTCAGGCCAG-GCAGCCTCTTGAGTGTTCAGACacgtgcctccttctctgctctgcccaggCCACGAAGAAATTCTTCCTCCTCA Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGC-TCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tagaattagtccaatgtgttgggtattagacttgctggtctttctcacagtAGCATTACAGTCCCGCCAGGGCTGCCACCGACCTGTAGTCCTTCCCTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCTCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGAGCAGCAAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGACTCACCTGGGCCTCCAGGGATCCTCAGGCCA-GGCAGCCTCTTGAGTGTTCAGACacgtattttttttttttttcctgacaggCCACGAAGAAATTCTTCCTCCTCA Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGC-TCCCCTGGCCCCCCAGGAATCCTCAGGCCG------GTGCAGCCTCTTCAGCGTTCTGACACG------------------CCCCGAAGAAATTCTTCCTCCTCC tagaattagtccaatgtgttgggtattagacttgctggtctttctcacagTAGCATTACAGTCCCGCCAGGGCTGCCACCGACCTGTAGTCCTTCCCTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCTCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGAGCAGCAAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGAcTCACCTGGGCCTCCAGGGATCCTCAGGCCAGGCAGCCTCTTGAGTGTTCAGACACGTGCCTCCTTCTCTGCTCTGCCCAGGCCACGAAGAAATTCTTCCTCCTCA Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGG-CTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGC GTTCTGACACGCCCCGAAGAAATTC tagaattagtccaatgtgttgggtattagacttgctggtctttctcacagTAGCATTACAGTCCCGCCAGGGCTGCCACCGACCTGTAGTCCTTCCCTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCTCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGAGCAGCAAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGACTCACCTGGGCCTCCAGGGATCCTCAGGCCAG-GCAGCCTCTTGAGTgttcagacacgtgcctccttctctgctctgcccag----------GCCACGAAGAAATTC Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGG-CTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC-------------------------GCCCCGAAGAAATTCTTCCTCCTCC tagaattagtccaatgtgttgggtattagacttgctggtctttctcacagTAGCATTACAGTCCCGCCAGGGCTGCCACCGACCTGTAGTCCTTCCCTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCTCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGAGCAGCAAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGACTCACCTGGGCCTCCAGGGATCCTCAGGCCAG-GCAGCCTCTTGAGTGTTCAGACACGTGCCTCCTTCTCTGCTCTGCCCAGGCCACGAAGAAATTCTTCCTCCTCA Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGC-TCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTC TGACACGCCCCGAAGAAATTCTTCC tagaattagtccaatgtgttgggtattagacttgctggtctttctcacagTAGCATTACAGTCCCGCCAGGGCTGCCACCGACCTGTAGTCCTTCCCTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCTCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGAGCAGCAAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGACTCACCTGGGCCTCCAGGGATCCTCAGGCCAGGCAGCCTCTTGAGTGTTCAgacacgtgcctccttctctgctctgcccagGCCACGAAGAAATTCTTCCTCCTCA Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGC-TCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTC TGACACGCCCCGAAGAAATTCTTCC tagaattagtccaatgtgttgggtattagacttgctggtctttctcacagTAGCATTACAGTCCCGCCAGGGCTGCCACCGACCTGTAGTCCTTCCCTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCTCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGAGCAGCAAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGACTCACCTGGGCCTCCAGGGATCCTCAGGCCAGGCAGCCTCTTGAGTGTTCAgacacgtgcctccttctctgctctgcccagGCCACGAAGAAATTCTTCCTCCTCA Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGC-TCCCCTGGCCCCCCAGGAATCCTCAGGCCG---------------GTGCAG---------CCTCTTCAGCGTTCTGACACGCCCCGAAGAAATTCTTCCTCCTCC tagaattagtccaatgtgttgggtattagacttgctggtctttctcacagTAGCATTACAGTCCCGCCAGGGCTGCCACCGACCTGTAGTCCTTCCCTGGTTACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTTCCTTCCTCTGGACCTCCTGGACTAAGCAATGGCCCACCAGCTCTTCAAGGGAGCAGCAAAGAACCTAGTGGTATCCAATTTCAAGGTGGGTGTCGCAGCAGTAGTGGGGCAGGACTCACCTGGGCCTCCAGGGATCCTCAGGCCAGGCAGCCTCTTGAGTGTTCAGACACGTGCCTCCTTCTCTGCTCTGCCCAGGCCACGAAGAAATTCTTCCTCCTCA #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagaaGGGATCTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTG-CGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGgtgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from CESAR aaGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagaaGGGATCTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCT-GCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGgtgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCT-GCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Pairagon AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCT-GCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCT--GGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGC---GTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCT--GGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGC---GTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from GeneWise -ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagaagggatctcagtgaagATGCTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGC-GTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAG-AGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGAtggtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGA-GAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGAtggtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCC-GGGAGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGT-GGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCC-GGGAGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGG--GGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGA---GGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGG--GGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGA---GGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGA-GGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagtCTTGCTGTCCATCCTCGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGG-CAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from CESAR cCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagtCTTGCTGTCCATCCTCGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTG-GCAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTcGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGC-AAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTCGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGG-CAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Pairagon CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTCGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGG-CAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAA atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTCGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGCAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCT-GATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAA atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTCGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGCAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTCGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGCAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCA-GAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCACGAAACACTCCTAAAACTACAGGAAATTGGTCTGG-TGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCA-GAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCACGAAACACTCCTAAAACTACAGGAAATTGGTC-TGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCACGAAACACTCCTAAAACTACAGGAAATTGGTCTGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCA-GAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCACGAAACACTCCTAAAACTACAGGAAATTGGTCT-GGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCA-GAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCACGAAACACTCCTAAAACTACAGGAAATTGGTCT-GGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCACGAAACACTCCTAAAACTACAGGAAATTGGTCTGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCACGAAACACTCCTAAAACTACAGGAAATTGGTCTGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from GeneWise --------------------------------------------------CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG GATTATGGGTCAAATTTACTTCCCAGCTCTATCTGCCCCGCCACCCCCAGCCCCTGCAGCCAGTGGTTCATACCTGGGACTCACGAAACACTCCTAAAACTACAGGAAATTGGTCTGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTG-GTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGCGTGGGGACCACAAAGAATGCATTACTGAGAG-AGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttatgtctcaacttgtgtttgctagGGACATACAGATGAGC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTG-GTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGCGTGGGGACCACAAAGAATGCATTACTGAGA-GAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttaatagtctcttatcttctttaagGGACATACAGATGAGC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGCGTGGGGACCACAAAGAATGCATTACTGAGAGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttatgtctcaacttgtgtttgctagGGACATACAGATGAGC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTG-GTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGCGTGGGGACCACAAAGAATGCATTACTGA-GAGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttatgtctcaacttgtgtttgctagGGACATACAGATGAGC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTG-GTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGCGTGGGGACCACAAAGAATGCATTACTGA-GAGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttatgtctcaacttgtgtttgctagGGACATACAGATGAGC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGCGTGGGGACCACAAAGAATGCATTACTGAGAGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttatgtctcaacttgtgtttgctagGGACATACAGATGAGC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGCGTGGGGACCACAAAGAATGCATTACTGAGAGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttatgtctcaacttgtgtttgctagGGACATACAGATGAGC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGC ggatggggagacatggtggagagtataaccttgtccttttccactcatagATTCCAGAACACTTCGGTGCAGTCAGTGCCATTGCTGAAGGACTTGGCTCTGAACTACTGCGTGGGGACCACAAAGAATGCATTACTGAGAGAGACCTTGCCCAAGGTTTCTCTCCTGTTATCCAGgtaaatactttatgtctcaacttgtgtttgctagGGACATACAGATGAGC #### Eml3_ID2516_15 --> 0 - 0 Original Alignment CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgcgtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCT-GAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from CESAR CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaaatactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCC-TGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Spaln_aa2Genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgcgtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Spaln_nt2Genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCT-CTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgcgtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCT-GAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Pairagon CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCT-CTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgcgtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCT-GAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Exonerate_protein2genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCC--TGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgcgtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTG---AGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Exonerate_coding2genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTC-TGCCTGTGGGATGGGGAAGGCCATGCACTGGCC--TGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgcgtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTG---AGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from GeneWise CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtgcgtactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGAC-AACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagatGGGTTGTACCTTGCGATAGGTTCACATGACCAATATGATTTACATATACAGTATTTCCAGTTGTG-TACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGAC-AACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagatGGGTTGTACCTTGCGATAGGTTCACATGACCAATATGATTTACATATACAGTATTTCCAGTTGT-GTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACCAATATGATTTACATATACAGTATTTCCAGTTGTGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACA-ACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACCAATATGATTTACATATACAGTATTTCCAGTTGT-GTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGA-CAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACCAATATGATTTACATATACAGTATTTCCAGTTGT-GTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACCAATATGATTTACATATACAGTATTTCCAGTTGTGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACCAATATGATTTACATATACAGTATTTCCAGTTGTGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATG---ATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACCAATATGATTTACATATACAGTATTTCCAGTTGTGT---ACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCC-GGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcaggtGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTCGGCAGTGGAACCTACACCTGGCATGGCTACA-CTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCC-GGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcaggtGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTCGGCAGTGGAACCTACACCTGGCATGGCTAC-ACTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcagGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTCGGCAGTGGAACCTACACCTGGCATGGCTACACTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAG-GAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcagGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTCGGCAGTGGAACCTACACCTGGCATGGCTACA-CTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGCAG-CCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcagGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTCGGCAGTGGAACCTACACCTGGCATGGCTACA-CTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcagGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTCGGCAGTGGAACCTACACCTGGCATGGCTACACTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from Exonerate_coding2genome GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ctttcgcatgggttgcaggcaactcttgccctcacccctctctacttcaGGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTCGGCAGTGGAACCTACACCTGGCATGGCTACACTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt Alignment from GeneWise GCACCACCGGTGAGGTACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG catgggttgcaggcaactcttg------CCCTCACCCCTCTCTACTTCAGGTGAACATCTGTGCAACTTGGAAGAAGGCAGTCCTCGGCAGTGGAACCTACACCTGGCATGGCTACACTTTTCATCATTGGCTGGCTGTCCTATGAAGACCAGTGAGAATGGTGCAgtaggaaaagaggctccctagactgtgttcactctccctctgagtctcgt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGAC-TTTGGGCACCTGTCAGTCTTTGGCACC---TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACCTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGT-GAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGAC-TTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGG--AATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACCTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTG---TCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACCTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGA-CTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA-TG-GAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACCTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGA-CTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA--TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACCTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGAC-TTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGG--AATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACCTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGAC-TTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGG--AATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACCTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTG---TCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACCTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCC-CGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCCGCATCTTTTTAGCCTATATATCACTCC-AGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTaggtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCC-CGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCCGCATCTTTTTAGCCTATATATCACTC-CAGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTaggtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCCGCATCTTTTTAGCCTATATATCACTCCAGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCC-GCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCCGCATCTTTTTAGCCTATATATCACT-CCAGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATG-CCCGCATCTT----------------CTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCCGCATCTTTTTAGCCTATATATCACTCCA-----------------GGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCCGCATCTTTTTAGCCTATATATCACTCCAGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCCGCATCTTTTTAGCCTATATATCACTCCAGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCCGCATCTTTTTAGCCTATATATCACTCCAGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacaggTTTCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTG-TCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from CESAR gTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacaggTTTCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATT-GTCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGcTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGT-CCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTG-TCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Pairagon GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGTCCA-GATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATT--GATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGTCCA---GATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATT--GATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGTCCA---GATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from GeneWise GTTCCTGGAAAGCAACTGG-TTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGCTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGT-CCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAA-TTTCCAGATTGAACACcagtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from CESAR CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCCAATCTGCCTTCAACAACTGGTTCAGTGGACACC-TAATTTCCAGATTGAACACcagtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACcCAATCTGCCTTCAACAACTGGTTCAGTGGACACCT-AATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCA-ATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCCAATCTGCCTTCAACAACTGGTTCAGTGGACACCT-AATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCA-CCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCCAATCTGCCTTCAACAACTGGTTCAGTGGACACCT-AATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCAC--CTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCCAATCTGCCTTCAACAACTGGTTCAGTGGACACCT---AATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCAC-CAATCAGCCTTCAACAACTGGTTCAGTGGCCAC--CTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCCAATCTGCCTTCAACAACTGGTTCAGTGGACACCT---AATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcaggctggaacacaacaatgcagcaaattttaaaattttctcataagGATTTCTCTGCCCACTGGTGGAATTTCCGTCCACTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAG-CCCTGATGTAACTGTTGCGCCTGTCTTCCTGCTTGGTGTGTCATCTGTAGAAgtacgaggtagtccctgcgcccagagagctgttccccctggttgagcctt Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcaggctggaacacaacaatgcagcaaattttaaaattttctcataagGATTTCTCTGCCCACTGGTGGAATTTCCGTCCACTTCAAGCATCATGCCAAGCCCAACATATTCCACAAA-GCCCTGATGTAACTGTTGCGCCTGTCTTCCTGCTTGGTGTGTCATCTGTAGAAgtacgaggtagtccctgcgcccagagagctgttccccctggtgtttgctt Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcaggctggaacacaacaatgcagcaaattttaaaattttctcataagGATTTCTCTGCCCACTGGTGGAATTTCCGTCCACTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGCCCTGATGTAACTGTTGCGCCTGTCTTCCTGCTTGGTGTGTCATCTGTAGAAgtacgaggtagtccctgcgcccagagagctgttccccctggttgagcctt Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcaggctggaacacaacaatgcagcaaattttaaaattttctcataagGATTTCTCTGCCCACTGGTGGAATTTCCGTCCACTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGC-CCTGATGTAACTGTTGCGCCTGTCTTCCTGCTTGGTGTGTCATCTGTAGAAgtacgaggtagtccctgcgcccagagagctgttccccctggttgagcctt Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCG-CCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcaggctggaacacaacaatgcagcaaattttaaaattttctcataagGATTTCTCTGCCCACTGGTGGAATTTCCGTCCACTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAG-CCCTGATGTAACTGTTGCGCCTGTCTTCCTGCTTGGTGTGTCATCTGTAGAAgtacgaggtagtccctgcgcccagagagctgttccccctggttgagcctt Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAA--GACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcaggctggaacacaacaatgcagcaaattttaaaattttctcataagGATTTCTCTGCCCACTGGTGGAATTTCCGTCCACTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGC---CCTGATGTAACTGTTGCGCCTGTCTTCCTGCTTGGTGTGTCATCTGTAGAAgtacgaggtagtccctgcgcccagagagctgttccccctggttgagcctt Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAA--GACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcaggctggaacacaacaatgcagcaaattttaaaattttctcataagGATTTCTCTGCCCACTGGTGGAATTTCCGTCCACTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGC---CCTGATGTAACTGTTGCGCCTGTCTTCCTGCTTGGTGTGTCATCTGTAGAAgtacgaggtagtccctgcgcccagagagctgttccccctggttgagcctt Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG tagcaggctggaacacaacaatgcagcaaattttaaaattttctcataagGATTTCTCTGCCCACTGGTGGAATTTCCGTCCACTTCAAGCATCATGCCAAGCCCAACATATTCCACAAAGCCCTGATGTAACTGTTGCGCCTGTCTTCCTGCTTGGTGTGTCATCTGTAGAAgtacgaggtagtccctgcgcccagagagctgttccccctggttgagcctt #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTCTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACAC-AATCCTCTTTGTCGTTGTGaggtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTCTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACA-CAATCCTCTTTGTCGTTGTGaggtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCC-TACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTCTGTCCcTACTCACCCTTCTATGGGGCCACTGGGACACA-ATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTC-CTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTCTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACAC-AATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGT-CCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTCTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACAC-AATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTCTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTCTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctgggcccctaggtccccagcacagcccttgaacttattcccttctagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTTCTGTCCCTACTCACCCTTCTATGGGGCCACTGGGACACAATCCTCTTTGTCGTTGTGAGgtaagttgcaacatgctgtccaccaaaatccatttaggtcttgctgacat #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTC-GTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgttcaaattctgtcttatttctaggGTGCTGGAGAGCCACTGGTTTCGTGTGGATCACACAAATGAACCACATCCCCAAGA-GATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgttgggactcttaagtctacatactagtggtggagtgactgtgctttatg Alignment from CESAR gGTGCTGGAGAGCCACTGG-TTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgttcaaattctgtcttatttctaggGTGCTGGAGAGCCACTGGTTTCGTGTGGATCACACAAATGAACCACATCCCCA-AGAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgttgggactcttaagtctacatactagtggtggagtgactgtgctttatg Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgttcaaattctgtcttatttctagGGTGCTGGAGAGCCACTGGTTTCGTGTGGATCACACAAATGAACCACATCCCCAAGAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgttgggactcttaagtctacatactagtggtggagtgactgtgctttatg Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGG-TTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgttcaaattctgtcttatttctagGGTGCTGGAGAGCCACTGGTTTCGTGTGGATCACACAAATGAACCACATCCCCAA-GAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgttgggactcttaagtctacatactagtggtggagtgactgtgctttatg Alignment from Pairagon GGTGCTGGAGAGCCACTGG-TTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgttcaaattctgtcttatttctagGGTGCTGGAGAGCCACTGGTTTCGTGTGGATCACACAAATGAACCACATCCCCAA-GAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgttgggactcttaagtctacatactagtggtggagtgactgtgctttatg Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgttcaaattctgtcttatttctagGGTGCTGGAGAGCCACTGGTTTCGTGTGGATCACACAAATGAACCACATCCCCAAGAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgttgggactcttaagtctacatactagtggtggagtgactgtgctttatg Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgttcaaattctgtcttatttctagGGTGCTGGAGAGCCACTGGTTTCGTGTGGATCACACAAATGAACCACATCCCCAAGAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgttgggactcttaagtctacatactagtggtggagtgactgtgctttatg Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTC---GTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgttcaaattctgtcttatttctagGGTGCTGGAGAGCCACTGGTTTCGTGTGGATCACACAAATGAACCACAT---CCCCAAGAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgttgggactcttaagtctacatactagtggtggagtgactgtgctttatg #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCACAAAAGGTTCTTCGTTGGTGTTACGGAAC-CCAGCTGATGCAAacgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCACAAAAGGTTCTTCGTTGGTGTTACGGAAC-CCAGCTGATGCAAacgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCcAAAGCTATCCACAAAAGGTTCTTCGTTGGTGTTACGGAACC-CAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCACAAAAGGTTCTTCGTTGGTGTTACGGAA-CCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCG-CCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCACAAAAGGTTCTTCGTTGGTGTTACGGAA-CCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCA attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCCAAAGCTATCCACAAAAGGTTCTTCGTTGGTGTTACGGAACCCAGctgatgcaaacgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_coding2genome CAAAGCCATCCACGAAAGGTTCTTTGT attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagacggctgctgtagctcttgcccaaagctatccacaaaaggttcttcgttggtgttacggaacccagctgatgcaaacgtaagggtctactgactttgtagGAAACAAACTCTGCTGTATCTTTTCCT Alignment from GeneWise ----GCCATCCACGAAAGGTTCTTTGT attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagacggctgctgtagctcttgcccaaagctatccacaaaaggttcttcgttggtgttacggaacccagctgatgcaaacgtaagggtctactgactttgtagGAAACAAACTCTGCTGTATCTTTTCCT #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACT-GACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagaGATCTAGAAGAAGATCCATTATTTACACGATATTTCACCAGACAACACTCTGCCCAACC-AGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACaggtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACT-GACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagaGATCTAGAAGAAGATCCATTATTTACACGATATTTCACCAGACAACACTCTGCCCAACC-AGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACaggtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACACGATATTTCACCAGACAACACTCTGCCCAACCAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACT-GACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACACGATATTTCACCAGACAACACTCTGCCCAACC-AGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTAC-TGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACACGATATTTCACCAGACAACACTCTGCCCAACC-AGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACACGATATTTCACCAGACAACACTCTGCCCAACCAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACACGATATTTCACCAGACAACACTCTGCCCAACCAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACACGATATTTCACCAGACAACACTCTGCCCAACCAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca #### Fam160b1_ID12365_16 --> 0 - 2 Original Alignment GTTGTTGGTGACCTCATGGTT-CGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCat agataaagtatggtacatgggactgtatcacttctctttgttaactttagGTTGTTGGTGATCTTATGGTCCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTC-GGTCAGAAAACGACTGCTTGGCTTGGAGCCTGAAGGCCCCatgtgagtgaaagcttccttgtttgacgtgccctgatgccttgctcatgacg Alignment from CESAR GTTGTTGGTGACCTCATGGTT-CGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCat agataaagtatggtacatgggactgtatcacttctctttgttaactttagGTTGTTGGTGATCTTATGGTCCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTT-CGGTCAGAAAACGACTGCTTGGCTTGGAGCCTGAAGGCCCCatgtgagtgaaagcttccttgtttgacgtgccctgatgccttggtgttcatt Alignment from Spaln_aa2Genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agataaagtatggtacatgggactgtatcacttctctttgttaactttagGTTGTTGGTGATCTTATGGTCCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCGGTCAGAAAACGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtgagtgaaagcttccttgtttgacgtgccctgatgccttgctcatgacg Alignment from Spaln_nt2Genome GTTGTTGGTGACCTCATGGTTCGAA-TCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agataaagtatggtacatgggactgtatcacttctctttgttaactttagGTTGTTGGTGATCTTATGGTCCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTC-GGTCAGAAAACGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtgagtgaaagcttccttgtttgacgtgccctgatgccttgctcatgacg Alignment from Pairagon GTTGTTGGTGACCTCATGGT-TCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agataaagtatggtacatgggactgtatcacttctctttgttaactttagGTTGTTGGTGATCTTATGGTCCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTC-GGTCAGAAAACGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtgagtgaaagcttccttgtttgacgtgccctgatgccttgctcatgacg Alignment from Exonerate_protein2genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agataaagtatggtacatgggactgtatcacttctctttgttaactttagGTTGTTGGTGATCTTATGGTCCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCGGTCAGAAAACGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtgagtgaaagcttccttgtttgacgtgccctgatgccttgctcatgacg Alignment from Exonerate_coding2genome GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agataaagtatggtacatgggactgtatcacttctctttgttaactttagGTTGTTGGTGATCTTATGGTCCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCGGTCAGAAAACGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtgagtgaaagcttccttgtttgacgtgccctgatgccttgctcatgacg Alignment from GeneWise GTTGTTGGTGACCTCATGGTTCGAATCCAGCGCATTCAAGACTTCACCCCCAAGCTTCTCCTGGTCAGAAAGCGGCTGCTTGGCTTGGAGCCTGAAGGCCCCAT agataaagtatggtacatgggactgtatcacttctctttgttaactttagGTTGTTGGTGATCTTATGGTCCCAAATCCAGCGTATTCAAGACTTTACCCTGAAGCTTCTTCGGTCAGAAAACGACTGCTTGGCTTGGAGCCTGAAGGCCCCATgtgagtgaaagcttccttgtttgacgtgccctgatgccttgctcatgacg #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtgtcatccgtcagggcatggcttctctccttgttgccctcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGTCGGGAGCCCCAAG-TGTTTCCCAACAAgtgtgtagttggggtttgtttatccattccaggcagcagcccaggccacc Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtgtcatccgtcagggcatggcttctctccttgttgccctcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGTCGGGAGCCCC-AAGTGTTTCCCAACAAgtgtgtagttggggtttgtttatccattccaggcagcagcccaggccacc Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCC-ACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG--- cttataagtgtcatccgtcagggcatggcttctctccttgttgccctcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCcACATCCCTGCTCCGAGCTGGTCGGGAGCCCCAAGTGTTTCCCAACAAGTGTgtagttggggtttgtttatccattccaggcagcagcccaggccacc Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCC-CACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtgtcatccgtcagggcatggcttctctccttgttgccctcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGTCGGGAGCCCCA-AGTGTTTCCCAACAAgtgtgtagttggggtttgtttatccattccaggcagcagcccaggccacc Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtgtcatccgtcagggcatggcttctctccttgttgccctcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGTCGGGAGCCCCA-AGTGTTTCCCAACAAgtgtgtagttggggtttgtttatccattccaggcagcagcccaggccacc Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACA cttataagtgtcatccgtcagggcatggcttctctccttgttgccctcagGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGTCGGGAGCCCCAAGTGTTTCCCAACAAgtgtgtagttggggtttgtttatccattccaggcagcagcccaggccacc Alignment from Exonerate_coding2genome CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAG-CCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACA cttataagtgtcatccgtcagggcatggcttctctccttgttgccctCAGGGAGGCCCAGGTGGGGGGCCTGCGCTGGGCAGGGAGCCCCACATCCCTGCTCCGAGCTGGTCGGGAGCCCCAAGTGTTTCCCAACAAgtgtgtagttggggtttgtttatccattccaggcagcagcccaggccacc Alignment from GeneWise cttataagtgtcatccgtcagggcatggcttctctccttgttgccctcagggaggcccaggtggggggcctgcgctgggcagggagccccacatccctgctccgagctggtcgggagccccaagtgtttcccaacaagtgtgtagttggggtttgtttatccattccaggcagcagcccaggccacc #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAA-ACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagatagataaagagcatacctgatggcttcctgtctccaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAACACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGG-CTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAA-ACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagatagataaagagcatacctgatggcttcctgtctccaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAACACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGG-GCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAACACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAA-ACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAACACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTT-GGGGCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAA-ACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAACACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGG-CTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAACACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAACACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAACACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCTTTGCCTTCCGTGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccgaggttactacactcagtctacagaatgtgttgtgttttttttttcagcCTAGTCTGCACTCGCCCTTCGTGGAAAGCTTGGTGTCTTCTCTG-GATGGAAACCAACTTCAAGgtgagatggcttggcatccatagtcccctggctagatcactgagtgactt Alignment from CESAR cCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccgaggttactacactcagtctacagaatgtgttgtgttttttttttcagcCTAGTCTGCACTCGCCCTTCGTGGAAAGCTTGGTGTCTTCTCT-GGATGGAAACCAACTTCAAGgtgagatggcttggcatccatagtcccctggctagatcactgagtgactt Alignment from Spaln_aa2Genome GTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccgaggttactacactcagtctacagaatgtgttgtgttttttttttcagcctagTCTGCACTCGCCCTTCGTGGAAAGCTTGGTGTCTTCTCTGG-ATGGAAACCAACTTCAAGgtgagatggcttggcatccatagtcccctggctagatcactgagtgactt Alignment from Spaln_nt2Genome CCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccgaggttactacactcagtctacagaatgtgttgtgttttttttttcagCCTAGTCTGCACTCGCCCTTCGTGGAAAGCTTGGTGTCTTCTCTGGATGGAAACCA-ACTTCAAGgtgagatggcttggcatccatagtcccctggctagatcactgagtgactt Alignment from Pairagon CCTGGTGTGCACT-GCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccgaggttactacactcagtctacagaatgtgttgtgttttttttttcagCCTAGTCTGCACTCGCCCTTCGTGGAAAGCTTGGTGTCTTCTCTG-GATGGAAACCAACTTCAAGgtgagatggcttggcatccatagtcccctggctagatcactgagtgactt Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ccgaggttactacactcagtctacagaatgtgttgtgttttttttttcagCCTAGTCTGCACTCGCCCTTCGTGGAAAGCTTGGTGTCTTCTCTGGATGGAAACCAACTTCAAGgtgagatggcttggcatccatagtcccctggctagatcactgagtgactt Alignment from Exonerate_coding2genome ccgaggttactacactcagtctacagaatgtgttgtgttttttttttcagcctagtctgcactcgcccttcgtggaaagcttggtgtcttctctggatggaaaccaacttcaaggtgagatggcttggcatccatagtcccctggctagatcactgagtgactt Alignment from GeneWise ------------------------------------------------AGCCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG CCGAGGTTACTACACTCAGTCTACAGAATGTGTTGTGTTTTTTTTTTCAGCCTAGTCTGCACTCGCCCTTCGTGGAAAGCTTGGTGTCTTCTCTGGATGGAAACCAACTTCAAGgtgagatggcttggcatccatagtcccctggctagatcactgagtgactt #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGG-TATCAAGGGCTGGGACCAGGGTCTACTGgggtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGG-TATCAAGGGCTGGGACCAGGGTCTACTGgggtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCAcCAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTATCAAG-GGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGT-ATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGG-TATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAG--GTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGT---ATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACA---GAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCA--CCAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGT-ATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCA-CAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACCAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGT-ATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAAT-GCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATCGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATC-GTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAAT-GCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATCGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAAT-CGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATCGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAAT-GCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATCGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATC-GTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAAT-GCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATCGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATC-GTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATCGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATCGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATCGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat #### Gal_ID62_4 --> 2 - 1 Original Alignment gaAGTGTTGATGTGCCCCTGCCT-GAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagggAGCGTTGATGTGCCCCTGCCTCGAAAGTATCATTGTTCGTACTATAATGG-GTTTCTCAGTTTCTTGCACCTTAAAggttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from CESAR gaAGTGTTGATGTGCCCCTGCCT-GAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagggAGCGTTGATGTGCCCCTGCCTCGAAAGTATCATTGTTCGTACTATAATG-GGTTTCTCAGTTTCTTGCACCTTAAAggttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Spaln_aa2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTCGAAAGTATCATTGTTCGTACTATAATGGGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Spaln_nt2Genome GAAGTGTTGATGTGCCCCTGCCT-GAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTCGAAAGTATCATTGTTCGTACTATAATGG-GTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Pairagon GAAGTGTTGATGTGCCCCTGCCT-GAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTCGAAAGTATCATTGTTCGTACTATAATGG-GTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Exonerate_protein2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTCGAAAGTATCATTGTTCGTACTATAATGGGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from Exonerate_coding2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagGGAGCGTTGATGTGCCCCTGCCTCGAAAGTATCATTGTTCGTACTATAATGGGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca Alignment from GeneWise TGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG atagggggggatcagtaagtggctgtaaaactttatgatacaatttttagggagCGTTGATGTGCCCCTGCCTCGAAAGTATCATTGTTCGTACTATAATGGGTTTCTCAGTTTCTTGCACCTTAAAGgttagcagacaacctttctgaatagtgtccacattgattggctgcattca #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGAC-TTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga gtgagtaattggcaggcctcaatagtaacatttcctttctctggtcacaggtCCCATGTCTGTTGGTTTAGACCTTTTCTCTGCCATGGATGGAACATGCATATG-GATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTgagtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from CESAR gcCCCACGTCTGTAGGTTTGGAC-TTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga gtaagaaattggcaggcctcaatagtaacatttcctttctctggtcacaggtCCCATGTCTGTTGGTTTAGACCTTTTCTCTGCCATGGATGGAACATGCATATG-GATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTgagtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTAT---GGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtgagtaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACCTT---TTCTCTGCCATGGATGGAACATGCATATGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGAC-TTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtgagtaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACCTTTTCTCTGCCATGGATGGAACATGCATAT-GGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGA-CTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtgagtaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACCTTTTCTCTGCCATGGATGGAACATGCATAT-GGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtgagtaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACCTTTTCTCTGCCATGGATGGAACATGCATATGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtgagtaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACCTTTTCTCTGCCATGGATGGAACATGCATATGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt Alignment from GeneWise GCCCCACGTCTGTAGGTTTGGAC---TTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA gtgagtaattggcaggcctcaatagtaacatttcctttctctggtcacagGTCCCATGTCTGTTGGTTTAGACCTTTTCTCTGCCATGGATGGAACATGCATATGG---ATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtgagtccatgataaatcgggataacaaaggtaatgaaagacctaacttt #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGG-GACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacactcttaccagcctgctgctgactgactgccctccagggTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGCGACCCCACCCGATTCCCCCAGCCACTCAATATGC-TGATCACTTGACTTCCAAAAGACGGAAGgtaagcggtgctgcagctgtctgcgtgcctcttgtccagtgttggggagg Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGG-GACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacactcttaccagcctgctgctgactgactgccctccagggTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGCGACCCCACCCGATTCCCCCAGCCACTCAATATGC-TGATCACTTGACTTCCAAAAGACGGAAGgtaagcggtgctgcagctgtctgcgtgcctcttgtccagtgttggggagg Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacactcttaccagcctgctgctgactgactgccctccagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGCGACCCCACCCGATTCCCCCAGCCACTCAATATGCTGATCACTTGACTTCCAAAAGACGGAAGgtaagcggtgctgcagctgtctgcgtgcctcttgtccagtgttggggagg Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGG-GACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacactcttaccagcctgctgctgactgactgccctccagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGCGACCCCACCCGATTCCCCCAGCCACTCAATATGC-TGATCACTTGACTTCCAAAAGACGGAAGgtaagcggtgctgcagctgtctgcgtgcctcttgtccagtgttggggagg Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGG-GACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacactcttaccagcctgctgctgactgactgccctccagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGCGACCCCACCCGATTCCCCCAGCCACTCAATATGC-TGATCACTTGACTTCCAAAAGACGGAAGgtaagcggtgctgcagctgtctgcgtgcctcttgtccagtgttggggagg Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacactcttaccagcctgctgctgactgactgccctccagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGCGACCCCACCCGATTCCCCCAGCCACTCAATATGCTGATCACTTGACTTCCAAAAGACGGAAGgtaagcggtgctgcagctgtctgcgtgcctcttgtccagtgttggggagg Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacactcttaccagcctgctgctgactgactgccctccagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGCGACCCCACCCGATTCCCCCAGCCACTCAATATGCTGATCACTTGACTTCCAAAAGACGGAAGgtaagcggtgctgcagctgtctgcgtgcctcttgtccagtgttggggagg Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacactcttaccagcctgctgctgactgactgccctccagGGTCCCAGGCATTGCCCCCCCCCTCATCCCTTGGCTATCATCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAGGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGCGACCCCACCCGATTCCCCCAGCCACTCAATATGCTGATCACTTGACTTCCAAAAGACGGAAGgtaagcggtgctgcagctgtctgcgtgcctcttgtccagtgttggggagg #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATG-TTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGCTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACC-GGATATCCATAATTTTTATGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATG-TTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGCTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACC-GGATATCCATAATTTTTATGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATG-TTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGcTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCG-GATATCCATAATTTTTATGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATG-TTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGCTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACC-GGATATCCATAATTTTTATGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATG-TTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGCTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACC-GGATATCCATAATTTTTATGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATG-TTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCAC--CGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGCTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCG---GATATCCATAATTTTTATGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATG-TTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCAC--CGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGCTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCG---GATATCCATAATTTTTATGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttccacgatccgtgtatctgtctgcagGGTTCAGCTCCTAATCTGTATGTATGGATTGAGATGAATGAACCCTCTGTCTTCAATGGTCCTGAGGTCACCATGCTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGATATCCATAATTTTTATGGCTTATATGTGgtgagccaggcaaatgagaaggcagtaaggcaaagaggataaaacagtcg #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaaggtGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGC-GGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from CESAR gtGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaaggtGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTG-CGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Spaln_aa2Genome CTTGGTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATC---CTCGTATCAGATGCTGGGGCCCATGGAGTGCG-GTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGC-GGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Pairagon GTGATGCACTCCTTATTCACCCT-GTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGC-GGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTCGTATCAGATGCTGGGGCCCATGGAGTGCGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTTGT-TCTACCAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from CESAR GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTTGT-TCTACCAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCC ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGcAGCTATCAGAAACATCATGGGCCCCAAACCTTGTTCTACCAgtaactttgagcagtgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTTGT-TCTACCAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Pairagon GTGTGGTATGACATTCAG-AGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTTGT-TCTACCAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTTGTTCTACCAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTTGTTCTACCAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaaaacataggtgccttatgagtgaccccgttcttcttcaccccaagGTGTGGTATGATATTCAGCAGCTATCAGAAACATCATGGGCCCCAAACCTTGTTCTACCAGTAACTTTGAGCAGTgtaaggatgactatctcaccagtatctgtgttcatttgtctagtcctgaa #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGC-GGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTCGGAACCATTGTGCCTCGATGGATGCGTGTCAGGC-CCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGC-GGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTCGGAACCATTGTGCCTCGATGGATGCGTGTCAGG-CCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTCGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGG-CGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTCGGAACCATTGTGCCTCGATGGATGCGTGTCAGGC-CCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Pairagon ATCCCCGTGTTCCAGCGTGG-CGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTCGGAACCATTGTGCCTCGATGGATGCGTGTCAGGC-CCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGC-GGAACCATTGTGCCTCGATGGATGCGTGTGAGG--CGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTCGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCC---CCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGC-GGAACCATTGTGCCTCGATGGATGCGTGTGAGG--CGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTCGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCC---CCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTCGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGA-GTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagcCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGACGTAGTCATAATGGGGGCTGGGAAGCCAG-TGCTGTGGTGCACCAGACAAAGggtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from CESAR tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGA-GTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagcCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGACGTAGTCATAATGGGGGCTGGGAAGCCAG-TGCTGTGGTGCACCAGACAAAGggtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Spaln_aa2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGA-GTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAcGTAGTCATAATGGGGGCTGGGAAGCCAGT-GCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGA-GTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGACGTAGTCATAATGGGGGCTGGGAAGCCAG-TGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Pairagon TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGA-GTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGACGTAGTCATAATGGGGGCTGGGAAGCCAGT-GCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGACGTAGTCATAATGGGGGCTGGGAAGCCAGTGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Exonerate_coding2genome gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagcctagcagaccctaagggccaccaggagacacctatctgggtggagcgacgtagtcataatgggggctgggaagccagtgctgtggtgcaccagacaaagggtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from GeneWise TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGACGTAGTCATAATGGGGGCTGGGAAGCCAGTGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCC-TGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagcaGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCCTGTCTCCTGCCAGATCCATGGGAATTAA-TGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCC-TGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagcaGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCCTGTCTCCTGCCAGATCCATGGGAATTAA-TGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCCTGTCTCCTGCCAGATCCATGGGAATTAATGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTC-CTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCCTGTCTCCTGCCAGATCCATGGGAATTAA-TGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTT-CCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCCTGTCTCCTGCCAGATCCATGGGAATTAA-TGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCCTGTCTCCTGCCAGATCCATGGGAATTAATGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCCTGTCTCCTGCCAGATCCATGGGAATTAATGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCCTGTCTCCTGCCAGATCCATGGGAATTAATGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac #### Gbf1_ID9804_23 --> 0 - 0 Original Alignment TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAG-AATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gtattatctatacagaacctagcctaagggtgattttgatgatttttcagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGCAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTT-ACCTAAAGCTATGGTCGAGgtagaacctaatcgatgtgccttaaaatactatagcctgatctgtcccac Alignment from CESAR TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAG-AATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gtattatctatacagaacctagcctaagggtgattttgatgatttttcagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGCAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAAC-TTTACCTAAAGCTATGGTCGAGgtagaacctaatcgatgtgccttaaaatactatagcctgatctgtcccac Alignment from Spaln_aa2Genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAG-AATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gtattatctatacagaacctagcctaagggtgattttgatgatttttcagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGcAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTA-CCTAAAGCTATGGTCGAGgtagaacctaatcgatgtgccttaaaatactatagcctgatctgtcccac Alignment from Spaln_nt2Genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAG-AATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gtattatctatacagaacctagcctaagggtgattttgatgatttttcagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGCAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAAC-TTTACCTAAAGCTATGGTCGAGgtagaacctaatcgatgtgccttaaaatactatagcctgatctgtcccac Alignment from Pairagon TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAG-AATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gtattatctatacagaacctagcctaagggtgattttgatgatttttcagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGCAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAAC-TTTACCTAAAGCTATGGTCGAGgtagaacctaatcgatgtgccttaaaatactatagcctgatctgtcccac Alignment from Exonerate_protein2genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gtattatctatacagaacctagcctaagggtgattttgatgatttttcagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGCAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTACCTAAAGCTATGGTCGAGgtagaacctaatcgatgtgccttaaaatactatagcctgatctgtcccac Alignment from Exonerate_coding2genome TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAA---TATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gtattatctatacagaacctagcctaagggtgattttgatgatttttcagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAG--CAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACT-TTACCTAAAGCTATGGTCGAGgtagaacctaatcgatgtgccttaaaatactatagcctgatctgtcccac Alignment from GeneWise TCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gtattatctatacagaacctagcctaagggtgattttgatgatttttcagTCTATTGAAAACCTTCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGCAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTACCTAAAGCTATGGTCGAGgtagaacctaatcgatgtgccttaaaatactatagcctgatctgtcccac #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from CESAR CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Spaln_aa2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAcGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGA-TCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Spaln_nt2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGA-TCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Pairagon CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGG-ATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCACGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGT-GGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGT-GGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTcCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGAA-TCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTC-TGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGT-GGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGT-GGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGG--GAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGAA---TCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGG--GAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGAA---TCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTT-CTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGAA-TCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTATATG-AAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagtTATCACTCAGAAACTAATCTTGTTCCTTACATGCAAGAGACTGGAGAACCAAGACATCTCCCTTCTACACA-TATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATG-AAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagtTATCACTCAGAAACTAATCTTGTTCCTTACATGCAAGAGACTGGAGAACCAAGACATCTCCCTTCTACAC-ATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATG-AAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGcAAGAGACTGGAGAACCAAGACATCTCCCTTCTACACAT-ATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATG-AAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGCAAGAGACTGGAGAACCAAGACATCTCCCTTCTACACA-TATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATG-AAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGCAAGAGACTGGAGAACCAAGACATCTCCCTTCTACACA-TATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGCAAGAGACTGGAGAACCAAGACATCTCCCTTCTACACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGCAAGAGACTGGAGAACCAAGACATCTCCCTTCTACACATATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTG---GAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgaggatttgcttaactcattgtttaatattttcctttatttttgcagTTATCACTCAGAAACTAATCTTGTTCCTTACATGCAAGAGACTGGAGAACCAAGACATCTCCCTTCTACACAT---ATGATCCCTCTAgtagggacatgacatggtcaccatgtacattggtatgtattaggtgtaaa #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCC-GCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagagAACCATAATGCTGTATTCTCTGCTCGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATG-TGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCC-GCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagagAACCATAATGCTGTATTCTCTGCTCGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATG-TGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCC-GCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTcGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGT-GAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGC-CGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTCGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGT-GAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGC-CGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTCGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGT-GAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCC-GCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGAT--GCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTCGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGT---GAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCC-GCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGAT--GCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTCGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGT---GAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCT-GCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTCGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGT-GAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTC-TGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCCTGGAACATTCAGATTCACAAGGGTCAATTAGAGA-GGTCAAGGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTC-TGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCCTGGAACATTCAGATTCACAAGGGTCAATTAGAG-AGGTCAAGGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTC-TGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCcTGGAACATTCAGATTCACAAGGGTCAATTAGAGAG-GTCAAGGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTT-CTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCCTGGAACATTCAGATTCACAAGGGTCAATTAGAGA-GGTCAAGGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTT-CTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCCTGGAACATTCAGATTCACAAGGGTCAATTAGAGA-GGTCAAGGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCCTGGAACATTCAGATTCACAAGGGTCAATTAGAGAGGTCAAGGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCCTGGAACATTCAGATTCACAAGGGTCAATTAGAGAGGTCAAGGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCCTGGAACATTCAGATTCACAAGGGTCAATTAGAGAGGTCAAGGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat #### Gpha2_ID1505_2 --> 2 - 0 Original Alignment ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCT-AGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgatgggtatcctagtttatcagtcccctccctcccacctttaagcaTTCAATGTTGCAGCAGTGCGTAGCGACCACCTTGGAAAGTGTCAGGCATCCCATGTATCACAGGCCTGTGTGGGATACTGTGAGTCCCAGTGCTTTCCCCTCCCGGTACTCTGTAT-GGTAGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtatgcgttctgtgtctggtggagcagccaagttacactttatgacacat Alignment from CESAR ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCT-AGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgatgggtatcctagtttatcagtcccctccctcccacctttaagcaTTCAATGTTGCAGCAGTGCGTAGCGACCACCTTGGAAAGTGTCAGGCATCCCATGTATCACAGGCCTGTGTGGGATACTGTGAGTCCCAGTGCTTTCCCCTCCCGGTACTCTG-TATGGTAGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtatgcgttctgtgtctggtggagcagccaagttacactttatgacacat Alignment from Spaln_aa2Genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgatgggtatcctagtttatcagtcccctccctcccacctttaagCATTCAATGTTGCAGCAGTGCGTAGCGACCACCTTGGAAAGTGTCAGGCATCCCATGTATCACAGGCCTGTGTGGGATACTGTGAGTCCCAGTGCTTTCCCCTCCCGGTACTCTGTATGGTAGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtatgcgttctgtgtctggtggagcagccaagttacactttatgacacat Alignment from Spaln_nt2Genome CCTTCAATGTGACGG---TGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCT-AGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgatgggtatcctagtttatcagtcccctccctcccacctttaagCATTCAATGTTGCAGCAGTGCGTAGCGACCACCTTGGAAAGTGTCAGGCATCCCATGTATCACAGGCCTGTGTGGGATACTGTGAGTCCCAGTGCTTTCCCCTCCCGGTACTCTGT-ATGGTAGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtatgcgttctgtgtctggtggagcagccaagttacactttatgacacat Alignment from Pairagon CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGT-CTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgatgggtatcctagtttatcagtcccctccctcccacctttaagcattcaatgttgcag------------CAGTGCGTAGCGACCACCTTGGAAAGTGTCAGGCATCCCATGTATCACAGGCCTGTGTGGGATACTGTGAGTCCCAGTGCTTTCCCCTCCCGGTACTCTGTA-TGGTAGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtatgcgttctgtgtctggtggagcagccaagttacactttatgacacat Alignment from Exonerate_protein2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgatgggtatcctagtttatcagtcccctccctcccacctttaagCATTCAATGTTGCAGCAGTGCGTAGCGACCACCTTGGAAAGTGTCAGGCATCCCATGTATCACAGGCCTGTGTGGGATACTGTGAGTCCCAGTGCTTTCCCCTCCCGGTACTCTGTATGGTAGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtatgcgttctgtgtctggtggagcagccaagttacactttatgacacat Alignment from Exonerate_coding2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgatgggtatcctagtttatcagtcccctccctcccacctttaagCATTCAATGTTGCAGCAGTGCGTAGCGACCACCTTGGAAAGTGTCAGGCATCCCATGTATCACAGGCCTGTGTGGGATACTGTGAGTCCCAGTGCTTTCCCCTCCCGGTACTCTGTATGGTAGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtatgcgttctgtgtctggtggagcagccaagttacactttatgacacat Alignment from GeneWise CCTTCAATGTGACG---GTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG caatatgatgggtatcctagtttatcagtcccctccctcccacctttaagCATTCAATGTTGCAGCAGTGCGTAGCGACCACCTTGGAAAGTGTCAGGCATCCCATGTATCACAGGCCTGTGTGGGATACTGTGAGTCCCAGTGCTTTCCCCTCCCGGTACTCTGTATGGTAGTCAGTGGTTATCGGCACAATACTACATCATCATCCCCCTGCTGCACTATCAGCAGCCTTAGAAAGgtatgcgttctgtgtctggtggagcagccaagttacactttatgacacat #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTG-GTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCCGTGTTTGGTCTCATTCTC---TTTTGGGAATTGCTAC-CACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTG-GTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCCGTGTTTGGTCTCATTCTCTTT---TGGGAATTGCTAC-CACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCCGTGTTTGGTCTCATTCTCTTTTG---GGAATTGCTACCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTG-GTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCCGTGTTTGGTCTCATTCTCT---TTTGGGAATTGCT-ACCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCT-GGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCCGTGTTTGGTCTCATTCTCT---TTTGGGAATTGCTA-CCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCCGTGTTTGGTCTCATTCTCTTTTG---GGAATTGCTACCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCCGTGTTTGGTCTCATTCTCTTTTG---GGAATTGCTACCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTG---GTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagcttctgtattgacaaactctcttcctcacacatctgcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCCGTGTTTGGTCTCATTCTCTTTTG------GGAATTGCTACCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtgagtaactcttgccacgacatgttccatgcaatatatggatcacaggg #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCT-ATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGG-CTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCT-ATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGG-CTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAC--ATAGGGGCCATGGTCTTGATTTATGCCAGCCGGGC-TGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCT-ATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGG-CTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGC-TATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGG-CTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGGGCCATGGTCTTGATTTA---TGCCAGCCGGGCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGGGC--CATGGTCTTGATTTATGCCAGCCGGGC-TGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCACATAGGGGCCATGGTCTTGATTTA---TGCCAGCCGGGCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAAT-GTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttaggCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATCGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAC-ACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAAT-GTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttaggCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATCGTACTGTGTGCAGTGCTGTCACGCCAGCGTC-AACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATCGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAAT-GTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATCGTACTGTGTGCAGTGCTGTCACGCCAGCGTCA-ACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAAT-GTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATCGTACTGTGTGCAGTGCTGTCACGCCAGCGTCA-ACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATCGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from Exonerate_coding2genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTTGCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG TGTATAGCCTCTGCAGTGAGGGCGTTCATATTAAATCCCCTCTACTTTAGGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATCGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTTTTGCTGGTGAAT---GTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG tgtatagcctctgcagtgagggcgttcatattaaatcccctctactttagGCTGGCTGTTCGAGGTGCCTTTGTGGGTGCTTCATTGCTTTTTTTATTAGTGAATCGTACTGTGTGCAGTGCTGTCACG---CCAGCGTCAACACAACCCTGGATTCTTCTACTGGTACATGTCTTGGTAAGTGACTCTCTCTTTGTCATCTGTGCCCTATCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGTGCCCCAACCACTAGTATCTACTTAGATGCGAAGgtaacgctgccatatggatggggcattgttggatttgtggacagagtact #### Hectd2_ID7146_4 --> 1 - 0 Original Alignment gGAAGATTTAGAAAAAGCTGAGGCC-ACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacaggGAAGATCTAGAAAAAGCTGAAGCCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAA-AGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from CESAR gGAAGATTTAGAAAAAGCTGAGGCC-ACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacaggGAAGATCTAGAAAAAGCTGAAGCCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATA-AAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Spaln_aa2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAAAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Spaln_nt2Genome GGAAGATTTAGAAAAAGCTG-AGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAA-AGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Pairagon GGAAGATTTAGAAAAAGCTGAGG-CCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAA-AGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Exonerate_protein2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAAAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Exonerate_coding2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAAAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from GeneWise GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAAAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa #### Hells_ID7708_15 --> 0 - 0 Original Alignment ATTGATGAAGAGTTGGTA-ACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTACACAAATTCTGGGAAGTTCTTGATTTCAGATCGAA-GCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from CESAR ATTGATGAAGAGTTGGTA-ACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTACACAAATTCTGGGAAGTTCTTGATTTCAGATCGA-AGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Spaln_aa2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTACACAAATTCTGGGAAGTTCTTGATTTCAGATCGAAGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Spaln_nt2Genome ATTGATGAAGAGTTGGTA-ACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTACACAAATTCTGGGAAGTTCTTGATTTCAGATCGAA-GCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Pairagon ATTGATGAAGAGTTGGTA-ACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTACACAAATTCTGGGAAGTTCTTGATTTCAGATCGAA-GCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Exonerate_protein2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTACACAAATTCTGGGAAGTTCTTGATTTCAGATCGAAGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Exonerate_coding2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTACACAAATTCTGGGAAGTTCTTGATTTCAGATCGAAGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from GeneWise ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTACACAAATTCTGGGAAGTTCTTGATTTCAGATCGAAGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGG-TTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGCTTCCCCAATTTTCGAAATGTGGTTGGTTATG-GACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATtggtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGG-TTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGCTTCCCCAATTTTCGAAATGTGGTTGGTTAT-GGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATtggtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGCTTCCCCAATTTTCGAAATGTGGTTGGTTATGGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGG-TTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGCTTCCCCAATTTTCGAAATGTGGTTGGTTATG-GACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGG-TTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGCTTCCCCAATTTTCGAAATGTGGTTGGTTATG-GACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGCTTCCCCAATTTTCGAAATGTGGTTGGTTATGGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGCTTCCCCAATTTTCGAAATGTGGTTGGTTATGGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGCTTCCCCAATTTTCGAAATGTGGTTGGTTATGGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAA-AAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG actcctcagcactgaatgttgtagtgatcactgacctctgacctccacagatACATCTGATCTTCACTTCCAAATTAGCAAAGACCGGTATGGAGGCCAGCCACTCTTCTCAGAACAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATG-CGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtaagacattagcttcggatgggacaaagtatgctagcttgttcttcact Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAA-AAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG actcctcagcactgaatgttgtagtgatcactgacctctgacctccacagatACATCTGATCTTCACTTCCAAATTAGCAAAGACCGGTATGGAGGCCAGCCACTCTTCTCAGAACAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTAT-GCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtaagacattagcttcggatgggacaaagtatgctagcttgttcttcact Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAA-AAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG actcctcagcactgaatgttgtagtgatcactgacctctgacctccacagATACATCTGATCTTCACTTCCAAATTAGCAAAGACCGGTATGGAGGCCAGCCACTCTTCTCAGAAcAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGC-GTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtaagacattagcttcggatgggacaaagtatgctagcttgttcttcact Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAA-AAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG actcctcagcactgaatgttgtagtgatcactgacctctgacctccacagATACATCTGATCTTCACTTCCAAATTAGCAAAGACCGGTATGGAGGCCAGCCACTCTTCTCAGAACAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTAT-GCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtaagacattagcttcggatgggacaaagtatgctagcttgttcttcact Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAA-AAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG actcctcagcactgaatgttgtagtgatcactgacctctgacctccacagATACATCTGATCTTCACTTCCAAATTAGCAAAGACCGGTATGGAGGCCAGCCACTCTTCTCAGAACAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTAT-GCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtaagacattagcttcggatgggacaaagtatgctagcttgttcttcact Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAA-AAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTAT--GGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG actcctcagcactgaatgttgtagtgatcactgacctctgacctccacagATACATCTGATCTTCACTTCCAAATTAGCAAAGACCGGTATGGAGGCCAGCCACTCTTCTCAGAACAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGC---GTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtaagacattagcttcggatgggacaaagtatgctagcttgttcttcact Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAA-AAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTAT--GGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG actcctcagcactgaatgttgtagtgatcactgacctctgacctccacagATACATCTGATCTTCACTTCCAAATTAGCAAAGACCGGTATGGAGGCCAGCCACTCTTCTCAGAACAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGC---GTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtaagacattagcttcggatgggacaaagtatgctagcttgttcttcact Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG actcctcagcactgaatgttgtagtgatcactgacctctgacctccacagATACATCTGATCTTCACTTCCAAATTAGCAAAGACCGGTATGGAGGCCAGCCACTCTTCTCAGAACAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACCTATGCGTAACAAAGGGGAAAGTATGCTTTGAAGCTAGGgtaagacattagcttcggatgggacaaagtatgctagcttgttcttcact #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACC-CCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCCATGTTACTATCATGGCCACATGAGCAGTGCAG-AATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACC-CCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCCATGTTACTATCATGGCCACATGAGCAGTGCA-GAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCCATGTTACTATCATGGCCACATGAGCAGTGCAGAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCT-TGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCCATGTTACTATCATGGCCACATGAGCAGTGCAG-AATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCT-TGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCCATGTTACTATCATGGCCACATGAGCAGTGCAG-AATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCCATGTTACTATCATGGCCACATGAGCAGTGCAGAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCCATGTTACTATCATGGCCACATGAGCAGTGCAGAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatgaaccgatccaatattggttgcctatctctacctttatttcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCCATGTTACTATCATGGCCACATGAGCAGTGCAGAATCATTCACCACTACACTAAGgtaagagggaatggttgatgtgtgctggaggtcttgatcggaggaagcta #### Hoga1_ID8381_4 --> 0 - 0 Original Alignment GTTGCTGACGTTTCTCCA-ATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttaagactgcagtgagacaaaggctagccaggtctggttttgtatttcagATTGCTGACGTTTCCCCACATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGC-AGAGCTACCTGTGGATGCTGTGGTTACGTTGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtaagtatctgcagcatccaatttgcccaaacacctaccaccccagcttg Alignment from CESAR GTTGCTGACGTTTCTCCA-ATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttaagactgcagtgagacaaaggctagccaggtctggttttgtatttcagATTGCTGACGTTTCCCCACATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGG-CAGAGCTACCTGTGGATGCTGTGGTTACGTTGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtaagtatctgcagcatccaatttgcccaaacacctaccaccccagcttg Alignment from Spaln_aa2Genome GTTGCTGACGTTTCTCCA-ATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttaagactgcagtgagacaaaggctagccaggtctggttttgtatttcagATTGCTGACGTTTCCCCAcATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCA-GAGCTACCTGTGGATGCTGTGGTTACGTTGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtaagtatctgcagcatccaatttgcccaaacacctaccaccccagcttg Alignment from Spaln_nt2Genome GTTGCTGACGTTTCTCCA-ATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttaagactgcagtgagacaaaggctagccaggtctggttttgtatttcagATTGCTGACGTTTCCCCACATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGC-AGAGCTACCTGTGGATGCTGTGGTTACGTTGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtaagtatctgcagcatccaatttgcccaaacacctaccaccccagcttg Alignment from Pairagon GTTGCTGACGTTTCTCCA-ATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttaagactgcagtgagacaaaggctagccaggtctggttttgtatttcagATTGCTGACGTTTCCCCACATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGC-AGAGCTACCTGTGGATGCTGTGGTTACGTTGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtaagtatctgcagcatccaatttgcccaaacacctaccaccccagcttg Alignment from Exonerate_protein2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttaagactgcagtgagacaaaggctagccaggtctggttttgtatttcagATTGCTGACGTTTCCCCACATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCAGAGCTACCTGTGGATGCTGTGGTTACGTTGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtaagtatctgcagcatccaatttgcccaaacacctaccaccccagcttg Alignment from Exonerate_coding2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttaagactgcagtgagacaaaggctagccaggtctggttttgtatttcagATTGCTGACGTTTCCCCACATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCAGAGCTACCTGTGGATGCTGTGGTTACGTTGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtaagtatctgcagcatccaatttgcccaaacacctaccaccccagcttg Alignment from GeneWise GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttaagactgcagtgagacaaaggctagccaggtctggttttgtatttcagATTGCTGACGTTTCCCCACATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCAGAGCTACCTGTGGATGCTGTGGTTACGTTGTCTCAACACCCAAATATTATTGGCCTGAAGGACAGTGGTGGAGATgtaagtatctgcagcatccaatttgcccaaacacctaccaccccagcttg #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGAT-TTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATCTTTCAGGTGTTGGCAGGGTCCGTTGGCT-CCTTCTAGCTAGCTATTCTGTGggtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from CESAR GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGAT-TTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATCTTTCAGGTGTTGGCAGGGTCCGTTG-GCTCCTTCTAGCTAGCTATTCTGTGggtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Spaln_aa2Genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATCTTTCAGGTGTTGGCAGGGTCCGTTGGCTCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Spaln_nt2Genome GTGACCAGGATTGGACTGATAGTTCA---CAAGACCAGCAAGCAGGAT-TTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATCTTTCAGGTGTTGGCAGGGTCCGTTGGC-TCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Pairagon GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGAT-TTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATCTTTCAGGTGTTGGCAGGGTCCGTTGGC-TCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Exonerate_protein2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATCTTTCAGGTGTTGGCAGGGTCCGTTGGCTCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Exonerate_coding2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATCTTTCAGGTGTTGGCAGGGTCCGTTGGCTCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from GeneWise GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATCTTTCAGGTGTTGGCAGGGTCCGTTGGCTCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTG-GCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCCACCCAAATTCTATGCCAACTGCTGGATGGATTCT-GCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from CESAR AGCCCCAGCACCCCACTG-GCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCCACCCAAATTCTATGCCAACTGCTGGATGGATTC-TGCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCCACCCAAATTCTATGCCAACTGCTGGATGGATTCTGCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGG-CCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCCACCCAAATTCTATGCCAACTGCTGGATGGATTCT-GCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAACA---ACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Pairagon AGCCCCAGCACCCCACT-GGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCCACCCAAATTCTATGCCAACTGCTGGATGGATTCT-GCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAACA---ACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCCACCCAAATTCTATGCCAACTGCTGGATGGATTCTGCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCCACCCAAATTCTATGCCAACTGCTGGATGGATTCTGCTCCTGGAGAAAAAGTTGAAGGAGGGCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCA-GTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCACGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGG-TTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCA-GTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCACGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCA-GGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCA-GTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAcGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGG------------GTTgtagggagacagtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCA-GTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCACGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGG-GTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCA-GTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCACGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGG-GTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCACGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCACGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGG-AGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTG-GAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAA-CTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGG-AGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGG-AGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Exonerate_coding2genome gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcaggaggagaaacagcacctggctaagcagccagccacaggaagagcaggcacggaaagcaaaggaggtggagcagccagaagggtgctcaacatgatggtggatgtgagagtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg #### Incenp_ID2608_11 --> 1 - 0 Original Alignment gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTG-GCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from CESAR gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATT-GGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Spaln_aa2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTcGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGG-CAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Spaln_nt2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTG-GCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Pairagon GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTG-GCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Exonerate_protein2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATT--GAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGG---CAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Exonerate_coding2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT-GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATT--GAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGG---CAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from GeneWise GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCAAGCCCGTCGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAA-GAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcgtagtggcatataacacctactctgtgctcacccctcaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAACGAACGAATAGATCACAAGAAACTCCTGCAAT-CACATCTCAGATATGCAAGgtaaaaaccacttcacatcgttttgggtgcagcgtgcatgctgaatgtac Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAA-GAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcgtagtggcatataacacctactctgtgctcacccctcaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAACGAACGAATAGATCACAAGAAACTCCTGCAA-TCACATCTCAGATATGCAAGgtaaaaaccacttcacatcgttttgggtgcagcgtgcatgctgaatgtac Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAA-GAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcgtagtggcatataacacctactctgtgctcacccctcagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAcGAACGAATAGATCACAAGAAACTCCTGCAATC-ACATCTCAGATATGCAAGgtaaaaaccacttcacatcgttttgggtgcagcgtgcatgctgaatgtac Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAA-GAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcgtagtggcatataacacctactctgtgctcacccctcagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAACGAACGAATAGATCACAAGAAACTCCTGCAAT-CACATCTCAGATATGCAAGgtaaaaaccacttcacatcgttttgggtgcagcgtgcatgctgaatgtac Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAA-GAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcgtagtggcatataacacctactctgtgctcacccctcagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAACGAACGAATAGATCACAAGAAACTCCTGCAAT-CACATCTCAGATATGCAAGgtaaaaaccacttcacatcgttttgggtgcagcgtgcatgctgaatgtac Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcgtagtggcatataacacctactctgtgctcacccctcagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAACGAACGAATAGATCACAAGAAACTCCTGCAATCACATCTCAGATATGCAAGgtaaaaaccacttcacatcgttttgggtgcagcgtgcatgctgaatgtac Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcgtagtggcatataacacctactctgtgctcacccctcagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAACGAACGAATAGATCACAAGAAACTCCTGCAATCACATCTCAGATATGCAAGgtaaaaaccacttcacatcgttttgggtgcagcgtgcatgctgaatgtac Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcgtagtggcatataacacctactctgtgctcacccctcagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAACGAACGAATAGATCACAAGAAACTCCTGCAATCACATCTCAGATATGCAAGgtaaaaaccacttcacatcgttttgggtgcagcgtgcatgctgaatgtac #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagtGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACGCTGCAGT-TCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagtGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACGCTGCAGT-TCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTATTAAGcAAAGAAGATGTCATCTCTACGCTGCAGTT-CTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACGCTGCAGT-TCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACGCTGCAGT-TCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACGCTGCAGTTCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACGCTGCAGTTCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACGCTGCAGTTCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTAC-CGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctataggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGA-GGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTAC-CGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctataggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG-AGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTAC-CGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACcCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGAGGGG-CTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTA-CCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGAGGGG-CTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTA-CCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGA-GGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTAC-CGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG--ATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGAG---GGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTA---CCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCC--TACCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGAG-GGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA gtttgggcctgtacaagggatgaaggtcttatttttaacttttcctatagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGAGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagctaaagtgctaactggggggatgtggtagggtttctacaggtgat #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gtcagtgtccctactctccaacctgttctcacttttgctgtctcctgcagGAGAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCCTACCAAC-GCGCGGCTATGGTAGGTTGCTTATTGAGTTCagtgagcatatgctacctggtcagggtctggtagctacggagatgaggttg Alignment from CESAR GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa gtcagtgtccctactctccaacctgttctcacttttgctgtctcctgcagGAGAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCCTACCAAC-GCGCGGCTATGGTAGGTTGCTTATTGAGTTCagtgagcatatgctacctggtcagggtctggtagctacggagatgaggttg Alignment from Spaln_aa2Genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtcagtgtccctactctccaacctgttctcacttttgctgtctcctgcagGAGAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCCTACCAACGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtgagcatatgctacctggtcagggtctggtagctacggagatgaggttg Alignment from Spaln_nt2Genome GAAAAGGAATCCACAGAAGATTACAATGTG-GCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtcagtgtccctactctccaacctgttctcacttttgctgtctcctgcagGAGAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCCTACCAACG-CGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtgagcatatgctacctggtcagggtctggtagctacggagatgaggttg Alignment from Pairagon GAAAAGGAATCCACAGAAGATTACAATG-TGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtcagtgtccctactctccaacctgttctcacttttgctgtctcctgcagGAGAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCCTACCAACG-CGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtgagcatatgctacctggtcagggtctggtagctacggagatgaggttg Alignment from Exonerate_protein2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtcagtgtccctactctccaacctgttctcacttttgctgtctcctgcagGAGAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCCTACCAACGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtgagcatatgctacctggtcagggtctggtagctacggagatgaggttg Alignment from Exonerate_coding2genome GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtcagtgtccctactctccaacctgttctcacttttgctgtctcctgcagGAGAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCCTACCAACGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtgagcatatgctacctggtcagggtctggtagctacggagatgaggttg Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA gtcagtgtccctactctccaacctgttctcacttttgctgtctcctgcagGAGAAAGAGTCCACAGAAGATTACAACATTCGCTTGCATTTTAACTCTACCCCCCTACCAACGCGCGGCTATGGTAGGTTGCTTATTGAGTTCAgtgagcatatgctacctggtcagggtctggtagctacggagatgaggttg #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTC-AACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTG-TGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTC-AACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGT-GTGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGTGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTT-CAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGT-GTGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTT-CAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGT-GTGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGTGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGTGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtctctacactaccccccccagaagggtggatgtgactgtcttttgtagCCGGCCTCAGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGTGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaaattgacagtttgcaaaaacagtcatcctcataccagctcctgtgtc #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccaggctggccctgatggctaaactcccaccactgctttgtcctgtagcaTTGGCTGAGATCCTACAGTGTGAAGGACATAAGCGGCAGAAAGCTTTTCTATG-TTACTACATTGACtgtactccaagccaagatagaagagggttactataaaagattaggaaatct Alignment from CESAR ccCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccaggctggccctgatggctaaactcccaccactgctttgtcctgtagcaTTGGCTGAGATCCTACAGTGTGAAGGACATAAGCGGCAGAAAGCTTTTCTATG-TTACTACATTGACtgtactccaagccaagatagaagagggttactataaaagattaggaaatct Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccctgatggctaaactcccaccactgctttgtcctgtagCATTGGCTGAGATCCTAcAGTGTGAAGGACATAAGCGGCAGAAAGCTTTTCTATGTTAC-TACATTGACTgtactccaagccaagatagaagagggttactataaaagattaggaaatct Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccctgatggctaaactcccaccactgctttgtcctgtagCATTGGCTGAGATCCTACAGTGTGAAGGACATAAGCGGCAGAAAGCTTTTCTATGT-TACTACATTGACTgtactccaagccaagatagaagagggttactataaaagattaggaaatct Alignment from Pairagon CCCTGGCTGAGATCCTG-AGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccctgatggctaaactcccaccactgctttgtcctgtagCATTGGCTGAGATCCTACAGTGTGAAGGACATAAGCGGCAGAAAGCTTTTCTATGT-TACTACATTGACTgtactccaagccaagatagaagagggttactataaaagattaggaaatct Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccctgatggctaaactcccaccactgctttgtcctgtagCATTGGCTGAGATCCTACAGTGTGAAGGACATAAGCGGCAGAAAGCTTTTCTATGTTACTACATTGACTgtactccaagccaagatagaagagggttactataaaagattaggaaatct Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccctgatggctaaactcccaccactgctttgtcctgtagCATTGGCTGAGATCCTACAGTGTGAAGGACATAAGCGGCAGAAAGCTTTTCTATGTTACTACATTGACTgtactccaagccaagatagaagagggttactataaaagattaggaaatct Alignment from GeneWise ---------GAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTC-------------------------------------------------------------- ctccaggctggccctgatggctaaactcccaccactgctttgtcctgtagCATTGGCTGAGATCCTACAGTGTGAAGGACATAAGCGGCAGAAAGCTTTTCTATGTTACTACATTGACTGTACTCCAAGCCAAGATAGAAGAGGGTTACTATAAAAGATTAGGAAATCT #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTCGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCAAG-TAATGAAGATGAGTGGcgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from CESAR GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGc gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTCGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCAA-GTAATGAAGATGAGTGGcgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Spaln_aa2Genome GGGGAGATAATC-GAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTcGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCAAGT-AATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Spaln_nt2Genome GGGGAGATAAT-CGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttagGGGGAGATAATTCGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCAAG-TAATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Pairagon GGGGGAGATAA-TCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttaGGGGGAGATAATTCGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCAAG-TAATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAG--GACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttaggGGGAGATAATTCGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCAAGT---AATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from Exonerate_coding2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAG--GACAACGAAGATGAGTGGC gagactcaaggcctaccaatacacacccatttttttgttttcttttttaggGGGAGATAATTCGAGGGCTGCCGCCTGCCTGTCCTTCGGCGCAATCAAGT---AATGAAGATGAGTGGCgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg Alignment from GeneWise gagactcaaggcctaccaatacacacccatttttttgttttcttttttagggggagataattcgagggctgccgcctgcctgtccttcggcgcaatcaagtaatgaagatgagtggcgtaagtgtgttctgaggggcagtccgaagaagctgagggcaaggtccagg #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATG-ATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACATGCATGGGCAAATACACCTACCCTGCACTCCGGGAGG-AGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATG-ATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACATGCATGGGCAAATACACCTACCCTGCACTCCGGGAGG-AGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACATGCATGGGCAAATACACCTACCCTGCACTCCGGGAGGAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATG-ATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACATGCATGGGCAAATACACCTACCCTGCACTCCGGGAGGA-GCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATG-ATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACATGCATGGGCAAATACACCTACCCTGCACTCCGGGAGGA-GCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACATGCATGGGCAAATACACCTACCCTGCACTCCGGGAGGAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACATGCATGGGCAAATACACCTACCCTGCACTCCGGGAGGAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG agtgctatgttaacctcaaccatttcccgatcctatacctgccctttcagGAGATGATTGACATCATGAAATCCATCTATGACATGCATGGGCAAATACACCTACCCTGCACTCCGGGAGGAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggggtaactttttgattagtgagatatgtctagtctagtagtta #### Kcnip2_ID9608_4 --> 2 - 0 Original Alignment acAGCGTGGAGGATGAGTTTGAA-CTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagatAGTGTTGAGGATGAGTTTGAACCTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAAC-ACTGCAGAAACAAGCCAAGTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from CESAR acAGCGTGGAGGATGAGTTTGAA-CTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagatAGTGTTGAGGATGAGTTTGAACCTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAAC-ACTGCAGAAACAAGCCAAGTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Spaln_aa2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACCTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACACTGCAGAAACAAGCCAAGTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Spaln_nt2Genome ACAGCGTGGAGGATGAGTTTGAAC-TATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACCTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAAC-ACTGCAGAAACAAGCCAAGTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Pairagon ACAGCGTGGAGGATGAGTTTGAA-CTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACCTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAAC-ACTGCAGAAACAAGCCAAGTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Exonerate_protein2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACCTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACACTGCAGAAACAAGCCAAGTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Exonerate_coding2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACCTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACACTGCAGAAACAAGCCAAGTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from GeneWise ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACCTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACACTGCAGAAACAAGCCAAGTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag #### Kif11_ID7318_8 --> 0 - 0 Original Alignment GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACT-GCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTCGCTCTCTTAGAGAGAACGCCTCATATTCCCT-TCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from CESAR GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACT-GCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTCGCTCTCTTAGAGAGAACGCCTCATATTCCCT-TCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Spaln_aa2Genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTCGCTCTCTTAGAGAGAACGCCTCATATTCCCTTCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Spaln_nt2Genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACT-GCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTCGCTCTCTTAGAGAGAACGCCTCATATTCCCT-TCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Pairagon GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACT-GCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTCGCTCTCTTAGAGAGAACGCCTCATATTCCCT-TCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Exonerate_protein2genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTCGCTCTCTTAGAGAGAACGCCTCATATTCCCTTCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Exonerate_coding2genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTCGCTCTCTTAGAGAGAACGCCTCATATTCCCTTCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from GeneWise GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTCGCTCTCTTAGAGAGAACGCCTCATATTCCCTTCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCT-TGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCCAGAGTATACTTGGTCACTTGAGTCAGAAAAGC-TTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTcCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTT-GGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAA-AGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCT-TGGCCAGGT---ACAGGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCT-TGGCCAGGT---ACAGGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTTGGCCAGGTA---CAGGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagggCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAGG---------TCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAA-GGGGTATTCTTTTATAAAAggtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagggCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACA-TAAGGGGTATTCTTTTATAAAAggtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAG-GGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACAT-AAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTGGACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacagGATTGCAGTTAAAGTTGTATATGTAAACAATTTAAAGGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCT-TTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagaTTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGA-CAGTGAAAAGTCAaagtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCT-TTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagaTTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAA-AGACAGTGAAAAGTCAaagtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCT-TTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAG-ACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACAC-TTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAG-ACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTTCATGAA-CGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagaGAGACAGTTATTCATCAGCCAGGAAATATTGGAAGAAAATACCGAACGGT-TGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from CESAR gGAGACACTTCTTCATGAA-CGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagaGAGACAGTTATTCATCAGCCAGGAAATATTGGAAGAAAATACCGAACGG-TTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Spaln_aa2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCCAGGAAATATTGGAAGAAAATACCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Spaln_nt2Genome GGAGACACTTCTTCATGAACGAG-AGATATTAGAAGAAAACGCTGAACGTCGCT-TGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCCAGGAAATATTGGAAGAAAATACCGAACG--GTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Pairagon GGAGACACTTCTTCATGAACGA-GAGATATTAGAAGAAAACGCTGAACGTCGCT-TGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCCAGGAAATATTGGAAGAAAATACCGAACG--GTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Exonerate_protein2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCCAGGAAATATTGGAAGAAAATACCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from Exonerate_coding2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCCAGGAAATATTGGAAGAAAATACCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt Alignment from GeneWise GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatctattatgttgtcctccctctcttccagAGAGACAGTTATTCATCAGCCAGGAAATATTGGAAGAAAATACCGAACGGTTGTGGCAATTTTTGAAGACCTGGCAGGGAAATGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAACTAGACACTGAAgtgagttgatgatcacattgacacttgagactctctcacaagatctcttt #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGCGTGGTCGAACTGTTAAAGGATGGCAGCAGTGGAC-CAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaagtttt Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGCGTGGTCGAACTGTTAAAGGATGGCAGCAGTGGA-CCAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaactgat Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGCGTGGTCGAACTGTTAAAGGATGGCAGCAGTGGACCAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaagtttt Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGCGTGGTCGAACTGTTAAAGGATGGCAGCAGTGGACCA-GCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaagtttt Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGG--------------------------------------------------- gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGCGTGGTCGAACTGTTAAAGGATGGCAGCAGTGGACCA-GCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAGTATGAGCGTAACCAGAGGTGATAGGTGAATCCATCTTGAGTCAAGTTTT Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGCGTGGTCGAACTGTTAAAGGATGGCAGCAGTGGACCAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaagtttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGCGTGGTCGAACTGTTAAAGGATGGCAGCAGTGGACCAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCTCCT---GAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaagtttt #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTG-GAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGCGAATATTATTACCCACGGGGCTTGAAGATAT-CGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTG-GAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGCGAATATTATTACCCACGGGGCTTGAAGATA-TCGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGCGAATATTATTACCCACGGGGCTTGAAGATATCGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTG-GAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGCGAATATTATTACCCACGGGGCTTGAAGATAT-CGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTG-GAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGCGAATATTATTACCCACGGGGCTTGAAGATAT-CGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGCGAATATTATTACCCACGGGGCTTGAAGATATCGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG gcatgagtgccaagcaagcagtaggatcgtagacccttctgccttcctagGTCCTTGGCAAATTT------GATGTGGCTGAGCAGCTTAGCAACCTGGCTTTGCTATGCCAGAACCAGGGCAGAGCTGAAGAGGTGCGAATATTATTACCCACGGGGCTTGAAGATATCGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAAACTAAGAACAACCTGgtaccttgtaaaggtaagggatgccaataaggaaggcagcacatccagat #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGC-CCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caacccttacactgttttagaggtcaattttttttttttttttgtaacagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCCCCGAGATTGCCTCAAGACATGTCTCTTCC-GAAGTGGCAGCGAATGGTAGCACCTCCTggtgagtccctctactaatcctagtgaaatagttgtgtagcggttgaatct Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGC-CCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caacccttacactgttttagaggtcaattttttttttttttttgtaacagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCCCCGAGATTGCCTCAAGACATGTCTCTTC-CGAAGTGGCAGCGAATGGTAGCACCTCCTggtgagtccctctactaatcctagtgaaatagttgtgtagcggttgaatct Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caacccttacactgttttagaggtcaattttttttttttttttgtaacagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCCCCGAGATTGCCTCAAGACATGTCTCTTCCGAAGTGGCAGCGAATGGTAGCACCTCCTGgtgagtccctctactaatcctagtgaaatagttgtgtagcggttgaatct Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAG-CCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caacccttacactgttttagaggtcaattttttttttttttttgtaacagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCCCCGAGATTGCCTCAAGACATGTCTCTTCC-GAAGTGGCAGCGAATGGTAGCACCTCCTGgtgagtccctctactaatcctagtgaaatagttgtgtagcggttgaatct Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAG-CCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caacccttacactgttttagaggtcaattttttttttttttttgtaacagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCCCCGAGATTGCCTCAAGACATGTCTCTTCC-GAAGTGGCAGCGAATGGTAGCACCTCCTGgtgagtccctctactaatcctagtgaaatagttgtgtagcggttgaatct Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caacccttacactgttttagaggtcaattttttttttttttttgtaacagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCCCCGAGATTGCCTCAAGACATGTCTCTTCCGAAGTGGCAGCGAATGGTAGCACCTCCTGgtgagtccctctactaatcctagtgaaatagttgtgtagcggttgaatct Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caacccttacactgttttagaggtcaattttttttttttttttgtaacagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCCCCGAGATTGCCTCAAGACATGTCTCTTCCGAAGTGGCAGCGAATGGTAGCACCTCCTGgtgagtccctctactaatcctagtgaaatagttgtgtagcggttgaatct Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caacccttacactgttttagaggtcaattttttttttttttttgtaacagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTTAGTCCCCCGAGATTGCCTCAAGACATGTCTCTTCCGAAGTGGCAGCGAATGGTAGCACCTCCTGgtgagtccctctactaatcctagtgaaatagttgtgtagcggttgaatct #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACCTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTA-TAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACCTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCT-ATAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTC---AACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAAcCTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATAACTACTTTCGGGTCGgcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACCTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTAT-AACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACCTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTAT-AACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCG attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACCTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAG-CTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCG attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACCTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACCTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATG-CGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAG-ACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATG-CGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAG-ACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATG-CGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGA-CTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATG-CGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGA-CTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATG-CGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC--AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGA---CTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATG-CGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC--AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGA---CTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC gtagtaaatcaccaaggcaaaggatgggctgaccttcttccgtcccctagGTTTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGACTTATTCCAAGAAGTATCCTGGCGATGCATgtatgtttgcgccagcaccacctgaaatgaggggattggagtccacttct #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTG-GCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcaggtTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGCTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTAT-GCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTG-GCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcaggtTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGCTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCAC-TATGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGCTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGG-CTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGCTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTA-TGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGG-CTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGCTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTA-TGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGCTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGCTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGCTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTAC-CACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT catttgtgcaatagaacgaaataatgattgacggagattcctttctgcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCGGCCTGGCCTACTGCTCCAAAGACTACCCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTA-TCCCATCACAGATgtgagtgatgccccacaccagtagcacacatatagtgatggataatcacc Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTAC-CACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT catttgtgcaatagaacgaaataatgattgacggagattcctttctgcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCGGCCTGGCCTACTGCTCCAAAGACTACCCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCT-ATCCCATCACAGATgtgagtgatgccccacaccagtagcacacatatagtgatggataatcatt Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTAC-CACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT catttgtgcaatagaacgaaataatgattgacggagattcctttctgcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCGGCCTGGCCTACTGCTCCAAAGACTACcCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTAT-CCCATCACAGATgtgagtgatgccccacaccagtagcacacatatagtgatggataatcacc Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTA-CCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT catttgtgcaatagaacgaaataatgattgacggagattcctttctgcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCGGCCTGGCCTACTGCTCCAAAGACTACCCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCT-ATCCCATCACAGATgtgagtgatgccccacaccagtagcacacatatagtgatggataatcacc Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTA-CCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT catttgtgcaatagaacgaaataatgattgacggagattcctttctgcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCGGCCTGGCCTACTGCTCCAAAGACTACCCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTA-TCCCATCACAGATgtgagtgatgccccacaccagtagcacacatatagtgatggataatcacc Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTAC-CACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT catttgtgcaatagaacgaaataatgattgacggagattcctttctgcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCGGCCTGGCCTACTGCTCCAAAGACTACCCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTATCCCA---TCACAGatgtgagtgatgccccacaccagtagcacacatatagtgatggataatcacc Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTAC-CACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT catttgtgcaatagaacgaaataatgattgacggagattcctttctgcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCGGCCTGGCCTACTGCTCCAAAGACTACCCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTATCCCA---TCACAGatgtgagtgatgccccacaccagtagcacacatatagtgatggataatcacc Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGC---CTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT catttgtgcaatagaacgaaataatgattgacggagattcctttctgcagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCGGCCTGGCCTACTGCTCCAAAGACTACCCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTAT---CCCATCACAGATgtgagtgatgccccacaccagtagcacacatatagtgatggataatcacc #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCT-GGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg ggttgctgccaaagcatgtcctcaagtggagtcattcttttctattgcagatATAAATGAATGTGTGATGCCTCGGGATGTGTCGTCATGGGGACTGTCTGACCAACC-TGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAggtaaggtcaggaacaattttggattagccaaagggaagcaaaaggggaga Alignment from CESAR atATCAACGAATGTGCGATGCCT-GGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg ggttgctgccaaagcatgtcctcaagtggagtcattcttttctattgcagatATAAATGAATGTGTGATGCCTCGGGATGTGTCGTCATGGGGACTGTCTGACCA-ACCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAggtaaggtcaggaacaattttggattagccaaagggaagcaaaaggggaga Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG ggttgctgccaaagcatgtcctcaagtggagtcattcttttctattgcagATATAAATGAATGTGTGATGCCTCGGGATGTGTCGTCATGGGGACTGTCTGACCAACCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcaggaacaattttggattagccaaagggaagcaaaaggggaga Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCT-GGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG ggttgctgccaaagcatgtcctcaagtggagtcattcttttctattgcagATATAAATGAATGTGTGATGCCTCGGGATGTGTCGTCATGGGGACTGTCTGACCAA-CCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcaggaacaattttggattagccaaagggaagcaaaaggggaga Alignment from Pairagon ATATCAACGAATGTGCGATGCCT-GGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG ggttgctgccaaagcatgtcctcaagtggagtcattcttttctattgcagATATAAATGAATGTGTGATGCCTCGGGATGTGTCGTCATGGGGACTGTCTGACCAA-CCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcaggaacaattttggattagccaaagggaagcaaaaggggaga Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG ggttgctgccaaagcatgtcctcaagtggagtcattcttttctattgcagATATAAATGAATGTGTGATGCCTCGGGATGTGTCGTCATGGGGACTGTCTGACCAACCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcaggaacaattttggattagccaaagggaagcaaaaggggaga Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG ggttgctgccaaagcatgtcctcaagtggagtcattcttttctattgcagATATAAATGAATGTGTGATGCCTCGGGATGTGTCGTCATGGGGACTGTCTGACCAACCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcaggaacaattttggattagccaaagggaagcaaaaggggaga Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG ggttgctgccaaagcatgtcctcaagtggagtcattcttttctattgcagATATAAATGAATGTGTGATGCCTCGGGATGTGTCGTCATGGGGACTGTCTGACCAACCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcaggaacaattttggattagccaaagggaagcaaaaggggaga #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACC-ACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTCACACGTTTAACCCACCAGCTTTGCTGTTGTA-TGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGggtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACC-ACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTCACACGTTTAACCCACCAGCTTTGCTGTTGT-ATGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGggtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTCACACGTTTAACCCACCAGCTTTGCTGTTGTATGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGAC-CACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTCACACGTTTAACCCACCAGCTTTGCTGTTGTA-TGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGAC-CACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTCACACGTTTAACCCACCAGCTTTGCTGTTGTA-TGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTCACACGTTTAACCCACCAGCTTTGCTGTTGTATGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTCACACGTTTAACCCACCAGCTTTGCTGTTGTATGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTCACACGTTTAACCCACCAGCTTTGCTGTTGTATGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc #### Ltbp3_ID1256_8 --> 2 - 1 Original Alignment caGCCTTCAAGGAGATCTGC-CCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAg tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagctGCCTTCAAGGAGATCTGTCCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGA-GCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAggtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from CESAR caGCCTTCAAGGAGATCTGC-CCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAg tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagctGCCTTCAAGGAGATCTGTCCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGA-GCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAggtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Spaln_aa2Genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGAGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Spaln_nt2Genome CAGCCTTCAAGGAGATCTG-CCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGA-GCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Pairagon CAGCCTTCAAGGAGATCTG-CCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGA-GCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Exonerate_protein2genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGAGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Exonerate_coding2genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAGGAGTGACCATGG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGAGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGGTAAGACTACAGgtgataatccactagcggacacaaggaagcaagagttc Alignment from GeneWise CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAGGAGTGACCATGG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGAGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCACCCCTAGAGGACACAGAGGAAGAGAGAGGTAAGACTACAGgtgataatccactagcggacacaaggaagcaagagttc #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGACTCTGTGCAACAGAGCCATCCCACTACCATTACCTCAC-TTCTCGGCCTTTCCTGggtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from CESAR CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGACTCTGTGCAACAGAGCCATCCCACTACCATTACCTCA-CTTCTCGGCCTTTCCTGggtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGAcTCTGTGCAACAGAGCCATCCCACTACCATTACCTCACT-TCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGACTCTGTGCAACAGAGCCATCCCACTACCATTACCTCA-CTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Pairagon CCAGTGAGTGAGGAGCGA-TCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGACTCTGTGCAACAGAGCCATCCCACTACCATTACCTCA-CTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGACTCTGTGCAACAGAGCCATCCCACTACCATTACCTCACTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagccagtgagtgaggagcgactctgtgcaacagagccatcccactaccattacctcacttctcggcctttcctgggtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTC-CCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgatcttgacccctcccctccctccgtttctgtttctctctccagacCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCCGGGCCACTACACATGCAACTGCTATCCTGGTTACA-GCTCAAGGCCTCCAGACCACCCATCTGGGAAggtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgatcttgacccctcccctccctccgtttctgtttctctctccagacCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCCGGGCCACTACACATGCAACTGCTATCCTGGTT-ACAGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCCGGGCCACTACACATGCAACTGCTATCCTGGTTACAGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTC-ACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCCGGGCCACTACACATGCAACTGCTATCCTGGTTACAG-CTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCT-GGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCCGGGCCACTACACATGCAACTGCTATCCTGGTTA-CAGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTC-CCTGGTCACTACAAATGCAACTGCTATCCTGGCTAC--CGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCCGGGCCACTACACATGCAACTGCTATCCTGGTTACAG---CTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Exonerate_coding2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTC-CCTGGTCACTACAAATGCAACTGCTATCCTGGCTAC--CGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCCGGGCCACTACACATGCAACTGCTATCCTGGTTACAG---CTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCCGGGCCACTACACATGCAACTGCTATCCTGGTTACAGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg ttggaactattataacttctctatggaacctctgcacggttcttccctagagGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAACAGGAATGCTGTTGCTCTCTGGGAGCGGGAT-GGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtgcggcaacagaccaaatcatggtcctatgaaactggtctgagaattct Alignment from CESAR agGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg ttggaactattataacttctctatggaacctctgcacggttcttccctagagGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAACAGGAATGCTGTTGCTCTCTGGGAGCGGGAT-GGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtgcggcaacagaccaaatcatggtcctatgaaactggtctgagaattct Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttggaactattataacttctctatggaacctctgcacggttcttccctagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATcGTCACTCAACAGGAATGCTGTTGCTCTCTGGGAGCGGGATG-GGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgcggcaacagaccaaatcatggtcctatgaaactggtctgagaattct Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttggaactattataacttctctatggaacctctgcacggttcttccctagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAACAGGAATGCTGTTGCTCTCTGGGAGCGGGATGGG-AGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgcggcaacagaccaaatcatggtcctatgaaactggtctgagaattct Alignment from Pairagon AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttggaactattataacttctctatggaacctctgcacggttcttccctagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAACAGGAATGCTGTTGCTCTCTGGGAGCGGGAT-GGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgcggcaacagaccaaatcatggtcctatgaaactggtctgagaattct Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGG--GGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttggaactattataacttctctatggaacctctgcacggttcttccctagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAACAGGAATGCTGTTGCTCTCTGGGAGCGGGATGGGA---GACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgcggcaacagaccaaatcatggtcctatgaaactggtctgagaattct Alignment from Exonerate_coding2genome AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGG--GGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttggaactattataacttctctatggaacctctgcacggttcttccctagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAACAGGAATGCTGTTGCTCTCTGGGAGCGGGATGGGA---GACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgcggcaacagaccaaatcatggtcctatgaaactggtctgagaattct Alignment from GeneWise AGGTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAAT-GTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG ttggaactattataacttctctatggaacctctgcacggttcttccctagAGGTGGAGCAGCCCCACCATAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCATACTGGCTACTAATCGTCACTCAACAGGAATGCTGTTGCTCTCTGGGAGCGGGATGGGA-GACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgcggcaacagaccaaatcatggtcctatgaaactggtctgagaattct #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGAC-GGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC ttagcagcatattgctctggtctctctagtcccttttttttttccaaaagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATCGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCA-TTTTGATGATTGTTGTTGCCGTCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTggtacttatttgttgaaggatgactttttttttttttcattgcagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGAC-GGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC ttagcagcatattgctctggtctctctagtcccttttttttttccaaaagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATCGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTC-ATTTTGATGATTGTTGTTGCCGTCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTggtacttatttgttgaaggatgatggtctgtttttctttccccagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctagtcccttttttttttccaaaagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATCGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCATTTTGATGATTGTTGTTGCCGTCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtacttatttgttgaaggatgactttttttttttttcattgcagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGA-CGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctagtcccttttttttttccaaaagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATCGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCATTTT-GATGATTGTTGTTGCCGTCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtacttatttgttgaaggatgactttttttttttttcattgcagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGA-CGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctagtcccttttttttttccaaaagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATCGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCA-TTTTGATGATTGTTGTTGCCGTCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtacttatttgttgaaggatgactttttttttttttcattgcagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctagtcccttttttttttccaaaagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATCGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCATTTTGATGATTGTTGTTGCCGTCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtacttatttgttgaaggatgactttttttttttttcattgcagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctagtcccttttttttttccaaaagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATCGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCATTTTGATGATTGTTGTTGCCGTCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtacttatttgttgaaggatgactttttttttttttcattgcagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctagtcccttttttttttccaaaagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATCGGTATGTGTATGGGGCCCCTAGTGGGACCCGCCCTCATTTTGATGATTGTTGTTGCCGTCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtacttatttgttgaaggatgactttttttttttttcattgcagGGTCCC #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCA-GGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCACGGTGGGGCTGTATGCGAGTGTCCTGGTGGTT-TCAATTGGATGCCTCCCGTGCTCGTCGTGTAggtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCA-GGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCACGGTGGGGCTGTATGCGAGTGTCCTGGTG-GTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAggtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCACGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCA-GGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCACGGTGGGGCTGTATGCGAGTGTCCTGGTGG-TTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCA-GGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCACGGTGGGGCTGTATGCGAGTGTCCTGGTGG-TTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Exonerate_protein2genome CTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgTCCCCGCAGATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCACGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Exonerate_coding2genome CTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgTCCCCGCAGATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCACGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from GeneWise --------------TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactatagGTCTGACTGAGTCTGTCCCCGCAGATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGCACCACGTCCACGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGC-TACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caataaaagtgaaaaattgaaggatactgccgttcttgcctctcacccagatGTCATC------GTGGGGCTCATCGCAGTAGGG------------AGTGAGGCAGCTGAATTCCACAGCTGTCTATTTGAGCAGTCCTTTAGATCTGCTGCTAG-GCACAGATTATGTCCAGTTgtaagattcaagtggttgaaacaacagcaaaagatggcatttaaaagcta Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGC-TACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caataaaagtgaaaaattgaaggatactgccgttcttgcctctcacccagatGTCATC------GTGGGGCTCATCGCAGTAGGG------------AGTGAGGCAGCTGAATTCCACAGCTGTCTATTTGAGCAGTCCTTTAGATCTGCTGCTA-GGCACAGATTATGTCCAGTTgtaagattcaagtggttgaaacaacagcaaaagatggcatttaaaagcta Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTG---AGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caataaaagtgaaaaattgaaggatactgccgttcttgcctctcacccagATGTCATC------GTGGGGCTCATCGCAGTAGGG------------AGTGAGGCAGCTGAATTCCACAGCTGTCTATTTGAGCAGTCCTTTAGATCTGCTGCTAGGCACAGATTATGTCCAGTTgtaagattcaagtggttgaaacaacagcaaaagatggcatttaaaagcta Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTG-CTACTTGAGCAGCC---TGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caataaaagtgaaaaattgaaggatactgccgttcttgcctctcacccagATGTCATC------GTGGGGCTCATCGCAGTAGG------------GAGTGAGGCAGCTGAATTCCACAGCTGTCTATTTGAGCAGTCCTTTAGATCTGCTGCTAG-GCACAGATTATGTCCAGTTgtaagattcaagtggttgaaacaacagcaaaagatggcatttaaaagcta Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTG-CTACTTGAGCAGCC---TGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caataaaagtgaaaaattgaaggatactgccgttcttgcctctcacccagATGTCATC------GTGGGGCTCATCGCAGTAGG------------GAGTGAGGCAGCTGAATTCCACAGCTGTCTATTTGAGCAGTCCTTTAGATCTGCTGCTAG-GCACAGATTATGTCCAGTTgtaagattcaagtggttgaaacaacagcaaaagatggcatttaaaagcta Alignment from Exonerate_protein2genome caataaaagtgaaaaattgaaggatactgccgttcttgcctctcacccagatgtcatcgtggggctcatcgcagtagggagtgaggcagctgaattccacagctgtctatttgagcagtcctttagatctgctgctaggcacagattatgtccagttgtaagattcaagtggttgaaacaacagcaaaagatggcatttaaaagcta Alignment from Exonerate_coding2genome caataaaagtgaaaaattgaaggatactgccgttcttgcctctcacccagatgtcatcgtggggctcatcgcagtagggagtgaggcagctgaattccacagctgtctatttgagcagtcctttagatctgctgctaggcacagattatgtccagttgtaagattcaagtggttgaaacaacagcaaaagatggcatttaaaagcta Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGC---TACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG caataaaagtgaaaaattgaaggatactgccgttcttgcctctcacccagATGTCATC------GTGGGGCTCATCGCAGTAGGG------------AGTGAGGCAGCTGAATTCCACAGCTGTCTATTTGAGCAGTCCTTTAGATCTGCTGCTAGGCACAGATTATGTCCAGTTgtaagattcaagtggttgaaacaacagcaaaagatggcatttaaaagcta #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccaggcTACCCTAATGAGGAGGCTGCACGAGGTAGTGCTGGTTTCATTGCGGGAATGGT-GGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from CESAR gcTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccaggcTACCCTAATGAGGAGGCTGCACGAGGTAGTGCTGGTTTCATTGCGGGAAT-GGTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccagGCTACCCTAATGAGGAGGCTGCACGAGGTAGTGCTGGTTTCATTGCGGGAATGGTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccagGCTACCCTAATGAGGAGGCTGCACGAGGTAGTGCTGGTTTCATTGCGGGAATGG-TGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccagGCTACCCTAATGAGGAGGCTGCACGAGGTAGTGCTGGTTTCATTGCGGGAATGG-TGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagctccttctctgcttatccccagGCTACCCTAATGAGGAGGCTGCACGAGGTAGTGCTGGTTTCATTGCGGGAATGGTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from Exonerate_coding2genome tggggtggggtccaatatgcattcacagctccttctctgcttatccccaggctaccctaatgaggaggctgcacgaggtagtgctggtttcattgcgggaatggtggagcaacacaaggacaaggtgaggccagatccatattacatgatgggagcctggttgctatgaactaa Alignment from GeneWise GCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagCTCCTTCTCTGCTTATCCCCAGGC---------TACCCTAATGAGGAGGCTGCACGAGGTAGTGCTGGTTTCATTGCGGGAATGGTGGAGCAACACAAGGACAAGgtgaggccagatccatattacatgatgggagcctggttgctatgaactaa #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagtTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACC-AGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from CESAR cTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagtTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACC-AGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Spaln_aa2Genome CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTAcCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCA-GGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Spaln_nt2Genome CTTTGGAGTGCTGC-TGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACC-AGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Pairagon CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCA-GGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATG-CCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagatTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCCACGAGACTGCTTCCATTCCATGCAGG-AGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATG-CCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagatTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCCACGAGACTGCTTCCATTCCATGCAGG-AGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCCACGAGACTGCTTCCATTCCATGCAGGAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGC-CACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCCACGAGACTGCTTCCATTCCATGCAGG-AGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATG-CCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCCACGAGACTGCTTCCATTCCATGCAGG-AGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCCACGAGACTGCTTCCATTCCATGCAGGAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCCACGAGACTGCTTCCATTCCATGCAGGAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCCACGAGACTGCTTCCATTCCATGCAGGAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg gccatactcttaggtgttcattgtgctatgaccatctccgtgcctgacaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACTAC-GGAAGTTTACCATggtaaacaccaaactccatggacctgtcattctgtgattacaataacaagt Alignment from CESAR gAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg gccatactcttaggtgttcattgtgctatgaccatctccgtgcctgacaggAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACTA-CGGAAGTTTACCATggtaaacaccaaactccatggacctgtcattctgtgattacaataacaagt Alignment from Spaln_aa2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG gccatactcttaggtgttcattgtgctatgaccatctccgtgcctgacagGAATGACCGATTGcTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACTACG-GAAGTTTACCATGgtaaacaccaaactccatggacctgtcattctgtgattacaataacaagt Alignment from Spaln_nt2Genome GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG gccatactcttaggtgttcattgtgctatgaccatctccgtgcctgacagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACTAC-GGAAGTTTACCATGgtaaacaccaaactccatggacctgtcattctgtgattacaataacaagt Alignment from Pairagon GAATGACCGATTG-TGGATCTGTATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG gccatactcttaggtgttcattgtgctatgaccatctccgtgcctgacagGAATGACCGATTGCTGGATCTGTATGGAGTTCTGTGGGGGAGCGTCACTAC-GGAAGTTTACCATGgtaaacaccaaactccatggacctgtcattctgtgattacaataacaagt Alignment from Exonerate_protein2genome gccatactcttaggtgttcattgtgctatgaccatctccgtgcctgacaggaatgaccgattgctggatctgtatggagttctgtgggggagcgtcactacggaagtttaccatggtaaacaccaaactccatggacctgtcattctgtgattacaataacaagt Alignment from Exonerate_coding2genome gccatactcttaggtgttcattgtgctatgaccatctccgtgcctgacaggaatgaccgattgctggatctgtatggagttctgtgggggagcgtcactacggaagtttaccatggtaaacaccaaactccatggacctgtcattctgtgattacaataacaagt Alignment from GeneWise gccatactcttaggtgttcattgtgctatgaccatctccgtgcctgacaggaatgaccgattgctggatctgtatggagttctgtgggggagcgtcactacggaagtttaccatggtaaacaccaaactccatggacctgtcattctgtgattacaataacaagt #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTC-TGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacaggATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATACTGGGCATTAGGTATTACTCCAGTGGAATCAAGTG-GCTCCAACATCCGCTACTCCACCTGCACCCCATGaggtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTC-TGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacaggATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATACTGGGCATTAGGTATTACTCCAGTGGAATCAAGT-GGCTCCAACATCCGCTACTCCACCTGCACCCCATGaggtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATACTGGGCATTAGGTATTACTCCAGTGGAATCAAGTGGCTCCAACATCCGCTACTCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGT-CTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATACTGGGCATTAGGTATTACTCCAGTGGAATCAAGTG-GCTCCAACATCCGCTACTCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGAC-------------------------------------GTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATACTGGGCATTAGGTATTACTCCAGTGGAATCAAGTG-------------------------------------GCTCCAACATCCGCTACTCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc Alignment from Exonerate_protein2genome gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacaggatggccccagaagttgctgctgtggagcgtaagggtggctacaatgagctatgtgacatactgggcattaggtattactccagtggaatcaagtggctccaacatccgctactccacctgcaccccatgaggtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc Alignment from Exonerate_coding2genome gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacaggatggccccagaagttgctgctgtggagcgtaagggtggctacaatgagctatgtgacatactgggcattaggtattactccagtggaatcaagtggctccaacatccgctactccacctgcaccccatgaggtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatattgagaggaccaccagatctaagtcttgtcttcacactcacagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATACTGGGCATTAGGTATTACTCCAGTGGAATCAAGTGGCTCCAACATCCGCTACTCCACCTGCACCCCATGAGgtacccttagtacttgccctgtgcttgtccccctgatgacccttgacctc #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtaggACTCAGAATTTTCACCACTTCCGCAAGCTACGCCCTGACCAAAAATCCAAAGAAGAGGCCGA-AGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtaggACTCAGAATTTTCACCACTTCCGCAAGCTACGCCCTGACCAAAAATCCAAAGAAGAGGCCG-AAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTAcGCCCTGACCAAAAATCCAAAGAAGAGgccgaagcagagaggcttctacaagtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTACGCCCTGACCAAAAATCCAAAGAAGAGGCCGA-AGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTG-GCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTC------------------------------------------------------- cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTACGCCCTGACCAAAAATCCAAAGAAGAGGCCGA-AGCAGAGAGGCTTCTACAAGTGAGCAGGGGAGAATAGCTGGAAACTTGAGATTTTGAAAAAGTGATCTG Alignment from Exonerate_protein2genome cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtaggactcagaattttcaccacttccgcaagctacgccctgaccaaaaatccaaagaagaggccgaagcagagaggcttctacaagtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Exonerate_coding2genome cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtaggactcagaattttcaccacttccgcaagctacgccctgaccaaaaatccaaagaagaggccgaagcagagaggcttctacaagtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTACGCCCTGACCAAAAATCCAAAGAAGAGGCCGAAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACG-ACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACACACCCAGCATCTCCCTCCAGCACTTCTTA-CCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from CESAR CACCCATTCACG-ACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACACACCCAGCATCTCCCTCCAGCACTTCTTA-CCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Spaln_aa2Genome CACCCATTCACG-ACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACAcACCCAGCATCTCCCTCCAGCACTTCTTAC-CAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Spaln_nt2Genome CACCCATTCACG-ACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACACACCCAGCATCTCCCTCCAGCACTTCTTA-CCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Pairagon CACCCATTCACG-ACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACACACCCAGCATCTCCCTCCAGCACTTCTTA-CCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Exonerate_protein2genome gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagcatcctttcacacacccagcatctccctccagcacttcttaccaactccttgataaggctagtgatccccatctaggtaccctctccccagaagacagtaagctaaaggtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGAC gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACACACCCAGCATCTCCCTCCAGCACTTCTTACCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAG--gtaagagcagttagggaactgggtttggcttggtggataggtggtgtc Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACACACCCAGCATCTCCCTCCAGCACTTCTTACCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca #### Map4k2_ID1634_13 --> 0 - 1 Original Alignment ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCACGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGA-TCCTTCAGAGATCCAAtgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from CESAR ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGt ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCACGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGG-ATCCTTCAGAGATCCAAtgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Spaln_aa2Genome ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCAcGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGAT-CCTTCAGAGATCCAATgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Spaln_nt2Genome ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCACGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGA-TCCTTCAGAGATCCAATgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Pairagon ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCACGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGA-TCCTTCAGAGATCCAATgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Exonerate_protein2genome ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagacccatgatatgtttccacgataccatccattcccacagccatcatggtcctgccgagaggatccttcagagatccaatgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Exonerate_coding2genome ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagacccatgatatgtttccacgataccatccattcccacagccatcatggtcctgccgagaggatccttcagagatccaatgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from GeneWise ACCCATGACATGTTTCCA-GATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCCTCCGAGATCCAGT ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCACGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGAT-CCTTCAGAGATCCAATgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTC-GGT------------------GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttCACCAAGTGGAATTCCGCAGCTCCACACCAGAAGGAGGCTCCACACC-GAAGGAGACAGAC------AATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from CESAR ttCACCAAGTGAAATTC------------------GGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttCACCAAGTGGAATTCCGCAGCTCCACACCAGAAGGAGGCTCCACACCGAAGGAGACAGAC------AATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTC------------------GGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagTTCACCAAGTGGAATTCCGCAGCTCCACACCAGAAGGAGGCTCCACACCGAAGGAGACAGAC------AATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAG-----ACA------GATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagTTCACCAAGTGGAATTCCGCAGCTCCACACCAGAAGGAGGCTCCACACCGAAGGAGACAGACAATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Pairagon TTCACCAAGTGAAATTCGGT-------------------GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagTTCACCAAGTGGAATTCCGCAGCTCCACACCAGAAGGAGGCTCCACACC-GAAGGAGACAGA------CAATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Exonerate_protein2genome aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttcaccaagtggaattccgcagctccacaccagaaggaggctccacaccgaaggagacagacaatgatccagtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Exonerate_coding2genome aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttcaccaagtggaattccgcagctccacaccagaaggaggctccacaccgaaggagacagacaatgatccagtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from GeneWise aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttcaccaagtggaattccgcagctccacaccagaaggaggctccacaccgaaggagacagacaatgatccagtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGC-CCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccaggcACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCCTGCTACCAACTGCTTGGGCTACCC-AAAGCAGCAAGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctaaggactgtttct Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCC-GCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccaggcACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCCTGCTACCAACTGCTTGGGCTACC-CAAAGCAGCAAGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctactcttccctcct Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCCTGCTACCAACTGCTTGGGCTACCCAAAGCAGCAAGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctaaggactgtttct Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCC-GCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCCTGCTACCAACTGCTTGGGCTAC-CCAAAGCAGCAAGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctaaggactgtttct Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCC-CGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCCTGCTACCAACTGCTTGGGCTAC-CCAAAGCAGCAAGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctaaggactgtttct Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCCTGCTACCAACTGCTTGGGCTACCCAAAGCAGCAAGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctaaggactgtttct Alignment from Exonerate_coding2genome gttggggacatgccaggggctggcaccactatttgtgttttccactccaggcaccttgtcagcccccccagctcctgatagcccatgccctgctaccaactgcttgggctacccaaagcagcaagaggatcgtgaggtaagacagataactgaatggtaagggtgggaaacctaaggactgtttct Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCCATGCCCTGCTACCAACTGCTTGGGCTACCCAAAGCAGCAAGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctaaggactgtttct #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTC-AATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTCAATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGG-TCACCCTGTGACACGAggtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTCAATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGG-TCACCCTGTGACACGAggtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCtCTCAATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGT-CACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCT-TCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTCAATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGG-TCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCT-TCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTCAATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGG-TCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGG--GTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTCAATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGT---CACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGG--GTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTCAATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGT---CACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTC-TTCAATGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCAC-- atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTCAATGGCTGTCCCCTGCAGATTCATGCTGCTGTTACTTGGGTCACCCTgtgacacgaggtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACCGGCAGT-ACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagtgCACAATCCTTATACCAGCAGCCACATTCCTGCTGGCTGCCCTGCCTGCAA-CCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from CESAR ttCGAAACCCCTATACCGGCAGT-ACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagtgCACAATCCTTATACCAGCAGCCACATTCCTGCTGGCTGCCCTGCCTG-CAACCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCCACATTCCTGCTGGCTGCCCTGCCTGCAACCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCGGCAGT-ACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCCACATTCCTGCTGGCTGCCCTGCCTG-CAACCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Pairagon TTCGAAACCCCTATACCGGCAG-TACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCCACATTCCTGCTGGCTGCCCTGCCTG-CAACCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCCACATTCCTGCTGGCTGCCCTGCCTGCAACCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCCACATTCCTGCTGGCTGCCCTGCCTGCAACCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCC---AGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACC---AGCAGCCACATTCCTGCTGGCTGCCCTGCCTGCAACCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa #### Map4k2_ID1649_28 --> 2 - 1 Original Alignment agGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagagGGGATTCCAGGCCCTCGCACAACAAGTAATACAGGTAGATCGGGACA-AGTCTTGGTCAGCTTTGAAcgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from CESAR agGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagagGGGATTCCAGGCCCTCGCACAACAAGTAATACAGGTAGATCGGGAC-AAGTCTTGGTCAGCTTTGAAcgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Spaln_aa2Genome AGGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTcGCACAACAAGTAATACAGGTAGATCGGGACAA-GTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Spaln_nt2Genome AGGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTCGCACAACAAGTAATACAGGTAGATCGGGACA-AGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Pairagon AGGGGATCCCAGGTTCT-GCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTCGCACAACAAGTAATACAGGTAGATCGGGACA-AGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Exonerate_protein2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTCGCACAACAAGTAATACAGGTAGATCGGGACAAGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from Exonerate_coding2genome tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagaggggattccaggccctcgcacaacaagtaatacaggtagatcgggacaagtcttggtcagctttgaacgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc Alignment from GeneWise AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcaacacccagtgagaggccctactccttgtatcttttttagAGGGGATTCCAGGCCCTCGCACAACAAGTAATACAGGTAGATCGGGACAAGTCTTGGTCAGCTTTGAACgtactaacctcaatgtcaaaagggggttataaacagagtgggagtaaagc #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGG-CCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag tctttctaacccttcactctttgtgctcactcattgaaatatcctcacagcCTAACCATGCCAGGATCCCGGGCTTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCCGCCAGCACCAGAAATCCATGTCTG-CTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtgagtctgcagggatagctgtacatctacagcaccatgttgcacacctg Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGG-CCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCag tctttctaacccttcactctttgtgctcactcattgaaatatcctcacagcCTAACCATGCCAGGATCCCGGGCTTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCCGCCAGCACCAGAAATCCATGTCTG-CTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCaggtgagtctgcagggatagctgtacatctacagcaccatgttgcacacctg Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttctaacccttcactctttgtgctcactcattgaaatatcctcacagCCTAACCATGCCAGGATCCCGGGCTTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCCGCCAGCACCAGAAATCCATGTCTGCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtctgcagggatagctgtacatctacagcaccatgttgcacacctg Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGG-CCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttctaacccttcactctttgtgctcactcattgaaatatcctcacagCCTAACCATGCCAGGATCCCGGGCTTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCCGCCAGCACCAGAAATCCATGTCTG-CTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtctgcagggatagctgtacatctacagcaccatgttgcacacctg Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGG-CCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttctaacccttcactctttgtgctcactcattgaaatatcctcacagCCTAACCATGCCAGGATCCCGGGCTTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCCGCCAGCACCAGAAATCCATGTCTG-CTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtctgcagggatagctgtacatctacagcaccatgttgcacacctg Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttctaacccttcactctttgtgctcactcattgaaatatcctcacagCCTAACCATGCCAGGATCCCGGGCTTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCCGCCAGCACCAGAAATCCATGTCTGCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtctgcagggatagctgtacatctacagcaccatgttgcacacctg Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttctaacccttcactctttgtgctcactcattgaaatatcctcacagCCTAACCATGCCAGGATCCCGGGCTTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCCGCCAGCACCAGAAATCCATGTCTGCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtctgcagggatagctgtacatctacagcaccatgttgcacacctg Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCGGCCCAG tctttctaacccttcactctttgtgctcactcattgaaatatcctcacagCCTAACCATGCCAGGATCCCGGGCTTCCACAGCTTCTGCTTCTGCCGCAGTTTCAGCGGCCCGGCCCCCGCCAGCACCAGAAATCCATGTCTGCTCTGTGCACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACTGTGAGGTGCCTCAGCCCAGgtgagtctgcagggatagctgtacatctacagcaccatgttgcacacctg #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGG-GTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaatgacttatatgtcagtttgctggtggtgggtgtctgcagGAGCTACGGGAACGGCGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGT-CACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGATgtaagaaacctgagatactagtcagcaaaggaaaatgccaattagctctc Alignment from CESAR GAGCTGCGGGAACGG-GTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaatgacttatatgtcagtttgctggtggtgggtgtctgcagGAGCTACGGGAACGGCGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGT-CACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGATgtaagaaacctgagatactagtcagcaaaggaaaatgccaattagctctc Alignment from Spaln_aa2Genome GAGCTGCGGGAACGG-GTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaatgacttatatgtcagtttgctggtggtgggtgtctgcagGAGCTACGGGAACGGcGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTC-ACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGATgtaagaaacctgagatactagtcagcaaaggaaaatgccaattagctctc Alignment from Spaln_nt2Genome GAGCTGCGGGAACGG-GTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaatgacttatatgtcagtttgctggtggtgggtgtctgcagGAGCTACGGGAACGGCGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGT-CACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGATgtaagaaacctgagatactagtcagcaaaggaaaatgccaattagctctc Alignment from Pairagon GAGCTGCGGGAACGG-GTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaatgacttatatgtcagtttgctggtggtgggtgtctgcagGAGCTACGGGAACGGCGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGT-CACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGATgtaagaaacctgagatactagtcagcaaaggaaaatgccaattagctctc Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaatgacttatatgtcagtttgctggtggtgggtgtctgcagGAGCTACGGGAACGGCGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGATgtaagaaacctgagatactagtcagcaaaggaaaatgccaattagctctc Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaatgacttatatgtcagtttgctggtggtgggtgtctgcagGAGCTACGGGAACGGCGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGATgtaagaaacctgagatactagtcagcaaaggaaaatgccaattagctctc Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaatgacttatatgtcagtttgctggtggtgggtgtctgcagGAGCTACGGGAACGGCGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCACTGACTGTGAAAATCTACTTAAGAAATTCCTCATACTTAATCCTAGTAAAAGAGGCACTTTAGATgtaagaaacctgagatactagtcagcaaaggaaaatgccaattagctctc #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG tgacacaaccctcacccttgattccgactttgttttgttttatttttaaggtGAGCTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAA-AGAGGCTCGAGCCAAATTCCACCAGgtaggagtgtccccaattttggctctagatcttggatgagaatatggcat Alignment from CESAR gaGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG tgacacaaccctcacccttgattccgactttgttttgttttatttttaaggtGAGCTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAG-AAAAGAGGCTCGAGCCAAATTCCACCAGgtaggagtgtccccaattttggctctagatcttggatgagaatatggcat Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTAC-CTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG tgacacaaccctcacccttgattccgactttgttttgttttatttttaagGTGAGCTGTTTGATTATcCTAGTGGCTCATGGCAGGATGAAAGA-AAAGAGGCTCGAGCCAAATTCCACCAGgtaggagtgtccccaattttggctctagatcttggatgagaatatggcat Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTA-CCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG tgacacaaccctcacccttgattccgactttgttttgttttatttttaagGTGAGCTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAG-AAAAGAGGCTCGAGCCAAATTCCACCAGgtaggagtgtccccaattttggctctagatcttggatgagaatatggcat Alignment from Pairagon GAGAGGTGTTTGATTA-CCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG tgacacaaccctcacccttgattccgactttgttttgttttatttttaagGTGAGCTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAG-AAAAGAGGCTCGAGCCAAATTCCACCAGgtaggagtgtccccaattttggctctagatcttggatgagaatatggcat Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG tgacacaaccctcacccttgattccgactttgttttgttttatttttaagGTGAGCTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAGAGGCTCGAGCCAAATTCCACCAGgtaggagtgtccccaattttggctctagatcttggatgagaatatggcat Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG tgacacaaccctcacccttgattccgactttgttttgttttatttttaagGTGAGCTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAGAGGCTCGAGCCAAATTCCACCAGgtaggagtgtccccaattttggctctagatcttggatgagaatatggcat Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG tgacacaaccctcacccttgattccgactttgttttgttttatttttaagGTGAGCTGTTTGATTATCCTAGTGGCTCATGGCAGGATGAAAGAAAAGAGGCTCGAGCCAAATTCCACCAGgtaggagtgtccccaattttggctctagatcttggatgagaatatggcat #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAAC-CCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc agcacaaaactgagagctagcctaataccttcctctcctttccttaccagaGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCA-GCCACGAATGGTGGCAGAATACtgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAAC-CCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc agcacaaaactgagagctagcctaataccttcctctcctttccttaccagaGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACC-AGCCACGAATGGTGGCAGAATACtgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCAGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCC-AGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCA-GCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Pairagon ----------------------------------------------CCAGGGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAA-CCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC AGCACAAAACTGAGAGCTAGCCTAATACCTTCCTCTCCTTTCCTTACCAGAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCA-GCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCAGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Exonerate_coding2genome agcacaaaactgagagctagcctaataccttcctctcctttccttaccagagagttggtggaacgtgaggttactgacttttcccaatggaaccccaggagttgtggtatatgtgaactctcggccttgcaccagccacgaatggtggcagaatactgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCAGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca #### Ms4a10_ID3085_2 --> 0 - 0 Original Alignment GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTC-AAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGT-TCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from CESAR GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTC-AAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGT-TCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Spaln_aa2Genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTTCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Spaln_nt2Genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCA-AGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGT-TCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Pairagon GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGT-CAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGT-TCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Exonerate_protein2genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTC-AAGAATCTGCACCTGGTGGTGTTGAAGTGCTGG--TATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTT---CCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Exonerate_coding2genome gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagggatttcacattgccattgcttttgctcatttagcctttggtgggtacttgatctccacggtccaagaatctgcaccttgtagtgctgaaatgttggttccactctggggaactgtctcagtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from GeneWise GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGATCTCCACGGTCCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTTCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATT-CTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCCTCCTCATATTTGGCTTCCTTCTAGATGGGGAAT-CATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATT-CTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCCTCCTCATATTTGGCTTCCTTCTAGATGGGGAA-TCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATT-CTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCCTCCTCATATTTGGCTTCCTTCTAGAT-GGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATT-CTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCCTCCTCATATTTGGCTTCCTTCTAGATGGGGAA-TCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATT-CTCCTCATATTTGGCTTCCTTCTAGATGGGGAA--TTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATC---ATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCT---CCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATT--CCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATC-ATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAG-AAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGCAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCA-GTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGggtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAG-AAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGCAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTT-GCAGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGggtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAG-AAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGcAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCAG-TTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGA-AGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGCAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGC-AGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAG-AAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGCAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGC-AGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAG-AAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGC--AAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGCAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCAG---TTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Exonerate_coding2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAG-AAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGC--AAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGCAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCAG---TTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAG-AAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGCAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCAG-TTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg gttcctgacttaatttctattgctcacatctctcttccctgtctttgcaggaGAGTCGGATAATAGAAATCAACAGCAAGATGGAGATGAAAGTGTGGGACCCAG-CAACCCCCTCACAGACCGACAGATCGACCAGTTCCTAGTGGTGGCTcggtaagtaaatgttcagggaggtcacataggtgcattgaactggaatttgc Alignment from CESAR gaGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg gttcctgacttaatttctattgctcacatctctcttccctgtctttgcaggaGAGTCGGATAATAGAAATCAACAGCAAGATGGAGATGAAAGTGTGGGACCCA-GCAACCCCCTCACAGACCGACAGATCGACCAGTTCCTAGTGGTGGCTcggtaagtaaatgttcagggaggtcacataggtgcattgaactggaatttgc Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gttcctgacttaatttctattgctcacatctctcttccctgtctttgcagGAGAGTCGGATAATAGAAATCAACAGCAAGATGGAGATGAAAGTGTGGGACCCAGCAACCCCCTCACAGACCGACAGATCGACCAGTTCCTAGTGGTGGCTCGgtaagtaaatgttcagggaggtcacataggtgcattgaactggaatttgc Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gttcctgacttaatttctattgctcacatctctcttccctgtctttgcagGAGAGTCGGATAATAGAAATCAACAGCAAGATGGAGATGAAAGTGTGGGACCCAG-CAACCCCCTCACAGACCGACAGATCGACCAGTTCCTAGTGGTGGCTCGgtaagtaaatgttcagggaggtcacataggtgcattgaactggaatttgc Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAG-AAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gttcctgacttaatttctattgctcacatctctcttccctgtctttgcagGAGAGTCGGATAATAGAAATCAACAGCAAGATGGAGATGAAAGTGTGGGACCCAG-CAACCCCCTCACAGACCGACAGATCGACCAGTTCCTAGTGGTGGCTCGgtaagtaaatgttcagggaggtcacataggtgcattgaactggaatttgc Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gttcctgacttaatttctattgctcacatctctcttccctgtctttgcagGAGAGTCGGATAATAGAAATCAACAGCAAGATGGAGATGAAAGTGTGGGACCCAGCAACCCCCTCACAGACCGACAGATCGACCAGTTCCTAGTGGTGGCTCGgtaagtaaatgttcagggaggtcacataggtgcattgaactggaatttgc Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gttcctgacttaatttctattgctcacatctctcttccctgtctttgcagGAGAGTCGGATAATAGAAATCAACAGCAAGATGGAGATGAAAGTGTGGGACCCAGCAACCCCCTCACAGACCGACAGATCGACCAGTTCCTAGTGGTGGCTCGgtaagtaaatgttcagggaggtcacataggtgcattgaactggaatttgc Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG gttcctgacttaatttctattgctcacatctctcttccctgtctttgcagGAGAGTCGGATAATAGAAATCAACAGCAAGATGGAGATGAAAGTGTGGGACCCAGCAACCCCCTCACAGACCGACAGATCGACCAGTTCCTAGTGGTGGCTCGgtaagtaaatgttcagggaggtcacataggtgcattgaactggaatttgc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGA-GCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtGCCGTGGGCACTTTTGTTAGACGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCA-CTTGCATATGAGCGCA------GCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGA-GCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtGCCGTGGGCACTTTTGTTAGACGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCA-CTTGCATATGAGCGCAGCTACT------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGACGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCACTTGCATATGAGCGCAGCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGA-GCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATAT---CACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGACGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCA-CTTGCATATGAGCGCAGCTACT------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGA-GCCCTAGACTGCAGCAGCTCA------ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGA-----TATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGACGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCA-CTTGCATATGAGCGCAGCTACT--------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGACGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCACTTGCATATGAGCGCAGCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Exonerate_coding2genome gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtgccgtgggcacttttgttagacgctctagattgcaacagctccatttctattcagcagtccacttgcatatgagcgcagctactagagatattatcactctggtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGACGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCACTTGCATATGAGCGCAGCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCA-ACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCACACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAG-TGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCA-ACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCACACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAA-GTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCACACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCA-ACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCACACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAG-TGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCA-ACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCACACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAG-TGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCACACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Exonerate_coding2genome AGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTGTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT AAGGCTGAAAAGACCGTCAAACCCTCATACCCATTTCTCCTCCCCTGCAGTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCACACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCACACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGTGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC-GTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from CESAR CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC-GTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGG---TATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCAcAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGTATATTCAGCAGGTTGgtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC-GTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Pairagon CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACC-GTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCA gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCA gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGTATATTCAGCAGgttggtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc Alignment from GeneWise CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGAAA gactgaaaagacagaccaattgcacattccacggtaccctcttttcccagCTACCCTGGAAGTCACTTGCACAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGTATATTCAGCAGGTTGgtggcaggtcaagtgaggacctgaatcaaaggctatcatgagcctc #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa cttatggtaggggaaagtcaagtggtcttcatgtttctgtaatttctcagtACTAAGCCAAATCCAAACCAGATCATCTCTGTGGGTTCTAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAAGGACTGA-TTGTGAGAGCTGTCATagtcagttatacatgtggcatacagagcctagactgaattagaagcgtgtt Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa cttatggtaggggaaagtcaagtggtcttcatgtttctgtaatttctcagtACTAAGCCAAATCCAAACCAGATCATCTCTGTGGGTTCTAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAAGGACTG-ATTGTGAGAGCTGTCATagtcagttatacatgtggcatacagagcctagactgaattagaagcgtgtt Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA cttatggtaggggaaagtcaagtggtcttcatgtttctgtaatttctcagTACTAAGCCAAATCCAAACCAGATCATCTCTGTGGGTTCTAAGCCTcGGCATGAATGGGGCTGGATTCCAGAAAGGACTGAT-TGTGAGAGCTGTCATAgtcagttatacatgtggcatacagagcctagactgaattagaagcgtgtt Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA cttatggtaggggaaagtcaagtggtcttcatgtttctgtaatttctcagTACTAAGCCAAATCCAAACCAGATCATCTCTGTGGGTTCTAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAAGGACTGA-TTGTGAGAGCTGTCATAgtcagttatacatgtggcatacagagcctagactgaattagaagcgtgtt Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCT-GGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA cttatggtaggggaaagtcaagtggtcttcatgtttctgtaatttctcagTACTAAGCCAAATCCAAACCAGATCATCTCTGTGGGTTCTAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAAGGACTGA-TTGTGAGAGCTGTCATAgtcagttatacatgtggcatacagagcctagactgaattagaagcgtgtt Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA cttatggtaggggaaagtcaagtggtcttcatgtttctgtaatttctcagTACTAAGCCAAATCCAAACCAGATCATCTCTGTGGGTTCTAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAAGGACTGATTGTGAGAGCTGTCATAgtcagttatacatgtggcatacagagcctagactgaattagaagcgtgtt Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA cttatggtaggggaaagtcaagtggtcttcatgtttctgtaatttctcagTACTAAGCCAAATCCAAACCAGATCATCTCTGTGGGTTCTAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAAGGACTGATTGTGAGAGCTGTCATAgtcagttatacatgtggcatacagagcctagactgaattagaagcgtgtt Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA cttatggtaggggaaagtcaagtggtcttcatgtttctgtaatttctcagTACTAAGCCAAATCCAAACCAGATCATCTCTGTGGGTTCTAAGCCTCGGCATGAATGGGGCTGGATTCCAGAAAGGACTGATTGTGAGAGCTGTCATAgtcagttatacatgtggcatacagagcctagactgaattagaagcgtgtt #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATG-CAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCCAGTACCGACTTTGTGCTTCTTGTTGGGTTT-TTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATG-CAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCCAGTACCGACTTTGTGCTTCTTGTTGGGTTT-TTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCCAGTACCGACTTTGTGCTTCTTGTTGGGTTTTTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATG-CAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCCAGTACCGACTTTGTGCTTCTTGTTGGGTTT-TTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATG-CAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCCAGTACCGACTTTGTGCTTCTTGTTGGGTTT-TTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCCAGTACCGACTTTGTGCTTCTTGTTGGGTTTTTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCCAGTACCGACTTTGTGCTTCTTGTTGGGTTTTTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCCAGTACCGACTTTGTGCTTCTTGTTGGGTTTTTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAG-ACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaaggcTCAATCCGACTTCCTAAGTCTGCCAAGCACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGG-AACTATCATCAAAGATCTGggtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgcatcc Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAG-ACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaaggcTCAATCCGACTTCCTAAGTCTGCCAAGCACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTG-GAACTATCATCAAAGATCTGggtgagtaggatgacgttttcgagcaaggtcagatcttctatttcagcttc Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAG-ACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGcACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGA-ACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgcatcc Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAG-ACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGCACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGG-AACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgcatcc Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAG-ACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGCACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGG-AACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgcatcc Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGCACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgcatcc Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGCACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgcatcc Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGCACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcgcatcc #### Myof_ID7468_34 --> 0 - 0 Original Alignment GATGGCTCCAAC-CTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGG-CCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from CESAR GATGGCTCCAAC-CTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGG-CCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Spaln_aa2Genome GATGGCTCCAAC-CTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATcCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGC-CCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Spaln_nt2Genome GATGGCTCCAA-CCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGG-CCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Pairagon GATGGCTCCAA-CCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGG-CCCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Exonerate_protein2genome GATGGCTCCAAC-CTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATG--GTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGC---CCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Exonerate_coding2genome GATGGCTCCAAC-CTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATG--GTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGC---CCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from GeneWise GATGGCTCCAAC-CTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGC-CCACAGGGGATCAGACCTGTGGTACCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGAC-AAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaagtatctgctggaacaatgggtgttgttctcttttctttaattagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAGCCTCTCTGGCATCCTGTTATGAATGGGGACCAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGA-TTTGAGGAACAAGgtgtcccatattcagatttgcacatttctcagtgaagtaaccagatacat Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGAC-AAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaagtatctgctggaacaatgggtgttgttctcttttctttaattagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAGCCTCTCTGGCATCCTGTTATGAATGGGGACCAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGA-TTTGAGGAACAAGgtgtcccatattcagatttgcacatttctcagtgaagtaaccagatacat Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGAC-AAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaagtatctgctggaacaatgggtgttgttctcttttctttaattagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAGCCTCTCTGGCATCCTGTTATGAATGGGGACcAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGAT-TTGAGGAACAAGgtgtcccatattcagatttgcacatttctcagtgaagtaaccagatacat Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGAC-AAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaagtatctgctggaacaatgggtgttgttctcttttctttaattagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAGCCTCTCTGGCATCCTGTTATGAATGGGGACCAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATT-TGAGGAACAAGgtgtcccatattcagatttgcacatttctcagtgaagtaaccagatacat Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGA-CAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaagtatctgctggaacaatgggtgttgttctcttttctttaattagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAGCCTCTCTGGCATCCTGTTATGAATGGGGACCAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATT-TGAGGAACAAGgtgtcccatattcagatttgcacatttctcagtgaagtaaccagatacat Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaagtatctgctggaacaatgggtgttgttctcttttctttaattagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAGCCTCTCTGGCATCCTGTTATGAATGGGGACCAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTGAGGAACAAGgtgtcccatattcagatttgcacatttctcagtgaagtaaccagatacat Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaagtatctgctggaacaatgggtgttgttctcttttctttaattagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAGCCTCTCTGGCATCCTGTTATGAATGGGGACCAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTGAGGAACAAGgtgtcccatattcagatttgcacatttctcagtgaagtaaccagatacat Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataaaagtatctgctggaacaatgggtgttgttctcttttctttaattagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAGCCTCTCTGGCATCCTGTTATGAATGGGGACCAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTGAGGAACAAGgtgtcccatattcagatttgcacatttctcagtgaagtaaccagatacat #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTCACCTACCAC-ATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa ggaggtgaggctggaaaagtggctgggtcatccttgcctcctctctccagaCTTGGCAACTTCACATACCATCATCCCTGTAAGCAGCAGCACACCACTACACC-CAGCCTCACCCTGCAGATGaagtgagtaaaagtccattacctgacctatgaatataaagtggcaatcccaa Alignment from CESAR gCTTGGCAACTTCACCTACCAC-ATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa ggaggtgaggctggaaaagtggctgggtcatccttgcctcctctctccagaCTTGGCAACTTCACATACCATCATCCCTGTAAGCAGCAGCACACCACTACAC-CCAGCCTCACCCTGCAGATGaagtgagtaaaagtccattacctgacctatgaatataaagtggcaatcccaa Alignment from Spaln_aa2Genome GCTTGGCAACTTCACCTACCAC-ATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggaggtgaggctggaaaagtggctgggtcatccttgcctcctctctccagACTTGGCAACTTCACATACCATcATCCCTGTAAGCAGCAGCACACCACTACACCC-AGCCTCACCCTGCAGATGAAgtgagtaaaagtccattacctgacctatgaatataaagtggcaatcccaa Alignment from Spaln_nt2Genome GCTTGGCAACTTCACCTACCA-CATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggaggtgaggctggaaaagtggctgggtcatccttgcctcctctctccagACTTGGCAACTTCACATACCATCATCCCTGTAAGCAGCAGCACACCACTACACC-CAGCCTCACCCTGCAGATGAAgtgagtaaaagtccattacctgacctatgaatataaagtggcaatcccaa Alignment from Pairagon GCTTGGCAACTTCACCTACCA-CATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggaggtgaggctggaaaagtggctgggtcatccttgcctcctctctccagACTTGGCAACTTCACATACCATCATCCCTGTAAGCAGCAGCACACCACTACACC-CAGCCTCACCCTGCAGATGAAgtgagtaaaagtccattacctgacctatgaatataaagtggcaatcccaa Alignment from Exonerate_protein2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggaggtgaggctggaaaagtggctgggtcatccttgcctcctctctccagACTTGGCAACTTCACATACCATCATCCCTGTAAGCAGCAGCACACCACTACACCCAGCCTCACCCTGCAGATGAAgtgagtaaaagtccattacctgacctatgaatataaagtggcaatcccaa Alignment from Exonerate_coding2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggaggtgaggctggaaaagtggctgggtcatccttgcctcctctctccagACTTGGCAACTTCACATACCATCATCCCTGTAAGCAGCAGCACACCACTACACCCAGCCTCACCCTGCAGATGAAgtgagtaaaagtccattacctgacctatgaatataaagtggcaatcccaa Alignment from GeneWise GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggaggtgaggctggaaaagtggctgggtcatccttgcctcctctctccagACTTGGCAACTTCACATACCATCATCCCTGTAAGCAGCAGCACACCACTACACCCAGCCTCACCCTGCAGATGAAgtgagtaaaagtccattacctgacctatgaatataaagtggcaatcccaa #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCG-GTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCACGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGG-AACTATCATAGCTCTTGTGGTAGTGATGGCCTTCaggtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from CESAR TCATCGCCAGCG-GTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCACGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGC-AGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCaggtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Spaln_aa2Genome -TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCACGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGA-ACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Spaln_nt2Genome TCATCGCCAGCG-GTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCACGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGA-ACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Pairagon TCATCGCCAGCG-GTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCACGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCA-GGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCACGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCACGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from GeneWise -------CCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCACGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCA-GGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGAT-GAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATCGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGC-CCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from CESAR GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGAT-GAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATCGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGG-CCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGAT-GAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATcGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCCCTT-GACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGAT-GAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATCGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGC-CCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGAT-GAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATCGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGC-CCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATCGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATCGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATCGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACA-GGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacaggtGTCATTGCCCAGGAAGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACACGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGA-CTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACA-GGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacaggtGTCATTGCCCAGGAAGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACACGGGGATGTTGTTTTTGCAAATGGAAAAAGCATA-AAGACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACA-GGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAcGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAA-GACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACA-GGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACACGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAG-ACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACA-GGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACACGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAG-ACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACACGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACACGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatagaatatgcatgtgtttttccacagGTGTCATTGCCCAGGAAGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACACGGGGATGTTGTTTTTGCAAATGGAAAAAGCATAAAGACTTCCTTGTAGTGAACAAAgtactgtataggatctgtctgatgcaactctgagcatgaaatctagctat #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACC-GAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTCGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACA-GTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from CESAR GTGGACACCACC-GAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTCGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACT-ACAGTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Spaln_aa2Genome CACCACC------GAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTCGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAG-TACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Spaln_nt2Genome GTGGACACCAC-CGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTCGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAG-TACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Pairagon GTGGACACCAC-CGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTCGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAG-TACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTCGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTCGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from GeneWise ----GACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTCGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAG-TACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAG-AACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaaggTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGCAACCAAAACTACACCCTGGCAGCCCAGATTT-AGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from CESAR gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAG-AACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaaggTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGCAACCAAAACTACACCCTGGCAGCCCAGATT-TAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGCAACCAAAACTACACCCTGGCAGCCCAGATTTAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACA GAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCAT atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAgcaaccaaaactacaccctggcagcccagatttagagcgtatcattgtgcgggtaacCACCACAACTAC-ACCCTGGCAGCCCAGATTTCGGAGCATATCAT Alignment from Pairagon GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAG-AACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGCAACCAAAACTACACCCTGGCAGCCCAGAT-TTAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGCAACCAAAACTACACCCTGGCAGCCCAGATTTAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGCAACCAAAACTACACCCTGGCAGCCCAGATTTAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from GeneWise GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGCAACCAAAACTACACCCTGGCAGCCCAGATTTAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACA-AAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagaGTTAATCTTCCACCTGAGCAGGTTACACCAGGTAACTGTGGGG---CTCCATTTCA-TGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACA-AAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagaGTTAATCTTCCACCTGAGCAGGTTACACCAGGTAACTGTGGGG---CTCCATTTC-ATGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACCAGGTAACTGTGGGGCT---CCATTTCATGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAG-TGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACCAGGTAACTGTGG---GGCTCCATTTCA-TGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACA-AAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACCAGGTAACTGTGG---GGCTCCATTTCA-TGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACCAGGTAACTGTGGG---GCTCCATTTCATGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACCAGGTAACTGTGGG---GCTCCATTTCATGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACCAGGTAACTGTGGG---GCTCCATTTCATGAGACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac #### Myrf_ID2732_6 --> 1 - 1 Original Alignment aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCT-CAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagaCTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCC-CAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTggtatgtgagactaacatagactggacaaccatgcagatttagtttttgtc Alignment from CESAR aCTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGG---CCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAg gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagaCTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTC--CAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCC-CCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTggtatgtgagactaacatagactggacaaccatgcagatttagtccctacc Alignment from Spaln_aa2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtttttgtc Alignment from Spaln_nt2Genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTC-AAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCC-CAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtttttgtc Alignment from Pairagon ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCT-CAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCC-CAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtttttgtc Alignment from Exonerate_protein2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCT-CAAGGCCCACTGTCACCTGGCACTGGATCCTTG--CCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCC---AGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtttttgtc Alignment from Exonerate_coding2genome ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGG---CCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCCA--AGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCC-AGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtttttgtc Alignment from GeneWise ACTCCCTCCACACCCCTCTAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGGACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGTCACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGCACCCTCCCCAG gaggttggaccaatatttcctgcaatcttcttttataatgtcatctccagACTACCACCACACCCCTCCAAGAAGAGGAAGCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGTTAAATGGGATGATTAAGCAGGAGCCTGGAACTGTCACAACCTTACCTCTGCACCCCGCCAGAGTCCCATCACCTCCATGGTTACCTCCAAGGCCCACTTTCACCTGGCACTGGATCTTTGCCCCCAGTATTGCCCGGGCTCAAACTCCACCCTGGCACCCACCAGGTGCACCCTCCCCTGgtatgtgagactaacatagactggacaaccatgcagatttagtttttgtc #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagcaAATACTACTCTGCAGCGCCCAGGGCACACCACCGGTACAAGGTGTGCTCT-TTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from CESAR ccAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagcaAATACTACTCTGCAGCGCCCAGGGCACACCACCGGTACAAGGTGTGCTCT-TTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGcGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTCT-TCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGCGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTT-TCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Pairagon CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGCGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTT-TCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGG-GCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGA caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGCGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGCGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGG-ACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg gcataaaggtgggacttggatgttacctttactctggttctttattttaggtTTTAGCAGCCAACAAGCTGTTGCCCGGCACTGCTGGGAGTGTGCTTCTCCAGCTCAGTG-TAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtcagtcacagcatcctgaggcagtgcctctatgtccccttggcccaggg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGG-ACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg gcataaaggtgggacttggatgttacctttactctggttctttattttaggtTTTAGCAGCCAACAAGCTGTTGCCCGGCACTGCTGGGAGTGTGCTTCTCCAGCTCAGT-GTAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtcagtcacagcatcctgaggcagtgccccccccactcccaccaccaggg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGCACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGTAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgcctctatgtccccttggcccagGG Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGG-ACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGCACTGCTGGGAGTGTGCTTCTCCAGCTCAGTG-TAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgcctctatgtccccttggcccagGG Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGG-ACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGCACTGCTGGGAGTGTGCTTCTCCAGCTCAGTG-TAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgcctctatgtccccttggcccagGG Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGCACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGTAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgcctctatgtccccttggcccagGG Alignment from Exonerate_coding2genome CCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTGGTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG GCATAAAGGTGGGACTTGGATGTTACCTTTACTCTGGTTCTTTATTTTAGGTTTTAGCAGCCAACAAGCTGTTGCCCGGCACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGTAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgcctctatgtccccttggcccagGG Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG------------------------------------------------GGG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGCACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGTAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGGTCAGTCACAGCATCCTGAGGCAGTGCCTCTATGTCCCCTTGGCCCAGGG #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtgagacacagcatcctgaggcagtgccccccccactcccaccaccagggCCTTTGGTGACGGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAG-CAAGAGCAGCCCTgagtaaaagccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from CESAR Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtcagtcacagcatcctgaggcagtgccccccccactcccaccaccagggCCTTTGGTGACGGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTA-GCAAGAGCAGCCCTgagtaaaagccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Spaln_aa2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGAT-------- GGgtgagacacagcatcctgaggcagtgccccccccactcccaccaccagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGcGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGCAAGAGCAGCCCTGAGTAAAAGCCAgcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Spaln_nt2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAG-AAGAGCAGCCCTGA GGgtgagacacagcatcctgaggcagtgccccccccactcccaccaccagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCT--AGCAAGAGCAGCCCTGAgtaaaagccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Pairagon GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCT-GCAGAAGAGCAGCCCTGA GGgtgagacacagcatcctgaggcagtgccccccccactcccaccaccagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGC--AAGAGCAGCCCTGAgtaaaagccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Exonerate_protein2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAG-GCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacacagcatcctgaggcagtgccccccccactcccaccaccagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGCAAGAGCAGCCCTGAGtaaaagccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Exonerate_coding2genome gggtgagacacagcatcctgaggcagtgccccccccactcccaccaccagggcctttggtgacggcagtagcaaactttaagcgctgcggctgcctcactgggagaagacatcctgaccctagcaagagcagccctgagtaaaagccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from GeneWise G------------------------------------------------GGGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGGTGAGACACAGCATCCTGAGGCAGTGCCCCCCCCACTCCCACCACCAGGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGCGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGCAAGAGCAGCCCTGAgtaaaagccagcagaggacatgtctcaccaggtatacatgggggtggtac #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAAT-GACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagtCCTCTGCAGGTTCAAATGGTTAATCGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGG-TTTCCCAGAGGAGAGGCATTACaggtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAAT-GACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagtCCTCTGCAGGTTCAAATGGTTAATCGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGG-TTTCCCAGAGGAGAGGCATTACaggtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATCGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAAT-GACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATCGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGG-TTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAAT-GACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATCGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGG-TTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATCGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATCGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTG-AAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGCAAAGCCATTGCTCATCTCATTGGGTTTTACA-GTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAggtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from CESAR ACAGACATTGTG-AAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGCAAAGCCATTGCTCATCTCATTGGGTTTT-ACAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAggtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGCAAAGCCATTGCTCATCTCATTGGGTTTTACAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Spaln_nt2Genome ACAGACATTGTG-AAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGCAAAGCCATTGCTCATCTCATTGGGTTTTAC-AGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Pairagon ACAGACATTGTG-AAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGCAAAGCCATTGCTCATCTCATTGGGTTTTAC-AGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGCAAAGCCATTGCTCATCTCATTGGGTTTTACAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGCAAAGCCATTGCTCATCTCATTGGGTTTTACAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tgttctagggtgatggccagaatgtccgacaccacaccctttcctggcagGCAGACATTGTGCAAAGCCATTGCTCATCTCATTGGGTTTTACAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaagttatctttaagtattgttgtgttgttgtaatgttcacaagatgct #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTC-CTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcaggtGGTGTCACAGGTGGCTGGGACAATCTCCCTTGCTGTGACGCCAGGTGGATCATCC---ACATTGA-TCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTATTGTCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTC-CTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcaggtGGTGTCACAGGTGGCTGGGACAATCTCCCTTGCTGTGACGCCAGGTGGATCATCCACA---TTGA-TCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTATTGTCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTC-CTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCcCTTGCTGTGACGCCAGGTGGATCATCCACATTGAT----CCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTATTGTCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTC-CTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCCCTTGCTGTGACGCCAGGTGGATCATCCA---CATTGA-TCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTATTGTCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCT-CCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTCCCTTGCTGTGACGCCAGGTGGATCATCCA---CATTGA-TCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTATTGTCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAAT---CTCCCTTGCTGTGACGCCAGGTGGATCATCCACATTGATCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTATTGTCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCT---CCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAAT--CTCCCTTGCTGTGACGCCAGGTGGATCATCCAC----ATTGATCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTATTGTCATGGATCGTCTGgcaagtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCGACAG agaggggtccttgcaaagagccctgacatcccactgaatttgctctgcagGTGGTGTCACAGGTGGCTGGGACAATCTC---CCTTGCTGTGACGCCAGGTGGATCATCCACATTGATCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTGGGAACAGCTACAGTTATTGTCATGGATCGTCTGGCAAgtgaccatgaacacccttacacttgtcaccggaaggggtgtgtttc #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAAT-TCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacagtgtttaatcatgccctagttaattcttctctggctgcctctgtaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCCGGCTTTGGCCGGGAACACAATCTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACC-CCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtatgacttaagcgaactcaaggtcagagcatcagaggggtccttgcaaa Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAAT-TCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacagtgtttaatcatgccctagttaattcttctctggctgcctctgtaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCCGGCTTTGGCCGGGAACACAATCTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAAC-CCCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtatgacttaagcgaactcaaggtcagagcatcagaggggtccttgcaaa Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcatgccctagttaattcttctctggctgcctctgtagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCCGGCTTTGGCCGGGAACACAATCTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCCCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtatgacttaagcgaactcaaggtcagagcatcagaggggtccttgcaaa Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAAT-TCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcatgccctagttaattcttctctggctgcctctgtagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCCGGCTTTGGCCGGGAACACAATCTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACC-CCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtatgacttaagcgaactcaaggtcagagcatcagaggggtccttgcaaa Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAAT-TCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcatgccctagttaattcttctctggctgcctctgtagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCCGGCTTTGGCCGGGAACACAATCTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACC-CCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtatgacttaagcgaactcaaggtcagagcatcagaggggtccttgcaaa Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcatgccctagttaattcttctctggctgcctctgtagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCCGGCTTTGGCCGGGAACACAATCTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCCCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtatgacttaagcgaactcaaggtcagagcatcagaggggtccttgcaaa Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTC---AGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcatgccctagttaattcttctctggctgcctctgtagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCCGGCTTTGGCCGGGAACACAAT--CTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCC-CCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtatgacttaagcgaactcaaggtcagagcatcagaggggtccttgcaaa Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcatgccctagttaattcttctctggctgcctctgtagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTTAAAACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCCGGCTTTGGCCGGGAACACAATCTCAGGCACAAAATTGTTCAACATCTTTGGCCATGTCAACCCCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtatgacttaagcgaactcaaggtcagagcatcagaggggtccttgcaaa #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGT-GAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCA-TGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaactct Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGT-GAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCC-ATGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaatggt Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCATGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaactct Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGA-AGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCA-TGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaactct Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGT-GAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCA-TGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaactct Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCATGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaactct Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCATGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaactct Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTCGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCATGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaactct #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAG-AAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagaTTCAATAATTTGGGC------CATGTAACCAAGCAAAAACATGATGGAGATAATGATACAGAAACTTC-AAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTggtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAG-AAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagaTTCAATAATTTGGGC------CATGTAACCAAGCAAAAACATGATGGAGATAATGATACAGAAACTTC-AAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTggtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAG-AAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGcAAAAACATGATGGAGATAATGATACAGAAACTTCA-AGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAG-AAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGG------CCATGTAACCAAGCAAAAACATGATGGAGATAATGATACAGAAACTTCA-AGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAG-AAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTT------------------------------------------------------ gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGCAAAAACATGATGGAGATAATGATACAGAAACTTCA-AGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGGTAAGACACTCCAAGGTGTCTTGGGTGGTGCTCTTAAATAGGCTGTAAAG Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGCAAAAACATGATGGAGATAATGATACAGAAACTTCAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGCCATGTA-----ACCAAGCAAAAACATGATGGAGATAATGATACAGAAACTTCA-AGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gaggtgcctcaggagagatcatccagaatcttcctccttgtttgctgcagATTCAATAATTTGGGC------CATGTAACCAAGCAAAAACATGATGGAGATAATGATACAGAAACTTCAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTGGCTGgtaagacactccaaggtgtcttgggtggtgctcttaaataggctgtaaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTC-ATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCC-TCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCagtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTC-ATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCC-TCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCagtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTC-ATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTcATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCT-CGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAG-AAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCC-TCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAG-TCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCC-TCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGT---CATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAA--GTTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCT-CGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggctgtaaagagcaacttatcgcttgctcctgtctcataacctgcatagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCTCAGCCAATCCATGACAGCAgtaagtccggcacacactgataagagttcaggtaagagatctgatcctag #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGAT-GAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactagtgtccctccttgctccacagatGACATCGAGGTTCAATTCTATGAGGATGATCGAGAATGGGTGGCAAGCCTTTGGGGACTTCTCTC-CACAGATGTTTATAAACAGgtaaggcaacctaattcatattccccctcttcagtgaaaacatgctggcc Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGAT-GAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactagtgtccctccttgctccacagatGACATCGAGGTTCAATTCTATGAGGATGATCGAGAATGGGTGGCAAGCCTTTGGGGACTTCTCTC-CACAGATGTTTATAAACAGgtaaggcaacctaattcatattccccctcttcagtgaaaacatgctggcc Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGAT-GAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactagtgtccctccttgctccacagATGACATCGAGGTTCAATTCTATGAGGATGATcGAGAATGGGTGGCAAGCCTTTGGGGACTTCTCTCCACA-GATGTTTATAAACAGgtaaggcaacctaattcatattccccctcttcagtgaaaacatgctggcc Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGAT-GAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactagtgtccctccttgctccacagATGACATCGAGGTTCAATTCTATGAGGATGATCGAGAATGGGTGGCAAGCCTTTGGGGACTTCTCT-CCACAGATGTTTATAAACAGgtaaggcaacctaattcatattccccctcttcagtgaaaacatgctggcc Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGAT-GAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactagtgtccctccttgctccacagATGACATCGAGGTTCAATTCTATGAGGATGATCGAGAATGGGTGGCAAGCCTTTGGGGACTTCTCT-CCACAGATGTTTATAAACAGgtaaggcaacctaattcatattccccctcttcagtgaaaacatgctggcc Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGAT-GAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCC--ACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactagtgtccctccttgctccacagATGACATCGAGGTTCAATTCTATGAGGATGATCGAGAATGGGTGGCAAGCCTTTGGGGACTTCTCTCCACA---GATGTTTATAAACAGgtaaggcaacctaattcatattccccctcttcagtgaaaacatgctggcc Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGAT-GAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCC--ACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactagtgtccctccttgctccacagATGACATCGAGGTTCAATTCTATGAGGATGATCGAGAATGGGTGGCAAGCCTTTGGGGACTTCTCTCCACA---GATGTTTATAAACAGgtaaggcaacctaattcatattccccctcttcagtgaaaacatgctggcc Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agacatcacttgcccctgccatatgactagtgtccctccttgctccacagATGACATCGAGGTTCAATTCTATGAGGATGATCGAGAATGGGTGGCAAGCCTTTGGGGACTTCTCTCCACAGATGTTTATAAACAGgtaaggcaacctaattcatattccccctcttcagtgaaaacatgctggcc #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCC-CCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttaggtGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACAC-GATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAggtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCC-CCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttaggtGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACA-CGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAggtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCA-ATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACAC-GATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCA-ATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACAC-GATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG aagctatatggatattgcctctgtaaggagtgatgtttgcctctgcttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCCGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtagctgctggcatgaaggttagcatgtgctattaaaagtgcaaggcagg #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTAC-GGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATCGGTGTCACTTCAGATGCACGTGCTCTGTTAG-GGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTAC-GGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATCGGTGTCACTTCAGATGCACGTGCTCTGTTA-GGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATCGGTGTCACTTCAGATGCACGTGCTCTGTTAGGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTA-CGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATCGGTGTCACTTCAGATGCACGTGCTCTGTTAG-GGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTA-CGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATCGGTGTCACTTCAGATGCACGTGCTCTGTTAG-GGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATCGGTGTCACTTCAGATGCACGTGCTCTGTTAGGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATCGGTGTCACTTCAGATGCACGTGCTCTGTTAGGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATCGGTGTCACTTCAGATGCACGTGCTCTGTTAGGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACT-GGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaagcaagaagtcgaaggctgacccatctgttgccttggttcatcagACCCCACTGCATCTTGCCATAATCACCCGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGG-GGGTGCAGACCCCACACTGCTGGAGAGGCACGAAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCAGGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGggtacgttgccaactactcttgtaccagaaacaatgttgtaaacccagagg Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACT-GGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaagcaagaagtcgaaggctgacccatctgttgccttggttcatcagACCCCACTGCATCTTGCCATAATCACCCGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAG-GGGGTGCAGACCCCACACTGCTGGAGAGGCACGAAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCAGGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGggtacgttgccaactactcttgtaccagaaacaatgttgtaaacccagagg Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaagaagtcgaaggctgacccatctgttgccttggttcatcagACCCCACTGCATCTTGCCATAATCACCCGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGGGGTGCAGACCCCACACTGCTGGAGAGGCACGAAGACTCTGCACTCCACTTGgctcacacctgtgaaaatttcttgccatcttggacctcccagGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgttgccaactactcttgtaccagaaacaatgttgtaaacccagagg Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACT-GGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaagaagtcgaaggctgacccatctgttgccttggttcatcagACCCCACTGCATCTTGCCATAATCACCCGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGG-GGGTGCAGACCCCACACTGCTGGAGAGGCACGAAGACTCTGCACTCCACTTGgctcacacctgtgaaaatttcttgccatcttggacctcccagGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgttgccaactactcttgtaccagaaacaatgttgtaaacccagagg Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCA-CTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaagaagtcgaaggctgacccatctgttgccttggttcatcagACCCCACTGCATCTTGCCATAATCACCCGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGG-GGGTGCAGACCCCACACTGCTGGAGAGGCACGAAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCAGGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgttgccaactactcttgtaccagaaacaatgttgtaaacccagagg Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaagaagtcgaaggctgacccatctgttgccttggttcatcagACCCCACTGCATCTTGCCATAATCACCCGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGGGGTGCAGACCCCACACTGCTGGAGAGGCACGAAGACTCTGCACTCCACTTGgctcacacctgtgaaaatttcttgccatcttggacctcccagGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgttgccaactactcttgtaccagaaacaatgttgtaaacccagagg Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaagaagtcgaaggctgacccatctgttgccttggttcatcagACCCCACTGCATCTTGCCATAATCACCCGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGGGGTGCAGACCCCACACTGCTGGAGAGGCACGAAGACTCTGCACTCCACTTGgctcacacctgtgaaaatttcttgccatcttggacctcccagGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgttgccaactactcttgtaccagaaacaatgttgtaaacccagagg Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaagaagtcgaaggctgacccatctgttgccttggttcatcagACCCCACTGCATCTTGCCATAATCACCCGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGGGGTGCAGACCCCACACTGCTGGAGAGGCACGAAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCAGGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgttgccaactactcttgtaccagaaacaatgttgtaaacccagagg #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGAC-TGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacaggaCTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACCTGCGGAGCTGTAGTGGAGGCTCCAGGGA-GCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGGTTGCCCATTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGAC-TGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacaggaCTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACCTGCGGAGCTGTAGTGGAGGCTCCA-GGGAGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGGTTGCCCATTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACCTGCGGAGCTGTAGTGGAGGCTCCAGGGAGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGGTTGCCCATTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGAC-TGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACCTGCGGAGCTGTAGTGGAGGCTCCAGGGA-GCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGGTTGCCCATTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGA-CTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACCTGCGGAGCTGTAGTGGAGGCTCCAGGGA-GCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGGTTGCCCATTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACCTGCGGAGCTGTAGTGGAGGCTCCAGGGAGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGGTTGCCCATTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACCTGCGGAGCTGTAGTGGAGGCTCCAGGGAGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGGTTGCCCATTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cagagaagccacttaggatgattaccacatgctttattccctgtacacagGACTATACCCTGTGCACCTGGCAGTACATGCGCGGAGCCCTGAATGTCTGGACCTCTTAGTTGACCTGCGGAGCTGTAGTGGAGGCTCCAGGGAGCAGGGGGGCCGAAATGCCTTGCGCCTGGCAACAGAGATGGAAGAATTGGGGCTGGTTGCCCATTTAGTCACCAAGgtaacaattcaactgtgtggactatgaatggggtaagataatagatgctg #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTG-CTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACCTGCTAAATGCTGCTCAGAATACCACAGAGCCACCCT-GGCCCCACCGACCCCGGTAggtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from CESAR GTGAAGACTCTG-CTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACCTGCTAAATGCTGCTCAGAATACCACAGAGCCAC-CCTGGCCCCACCGACCCCGGTAggtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Spaln_aa2Genome GTGAAGACTCTG-CTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTAcCTGCTAAATGCTGCTCAGAATACCACAGAGCCACCCTG-GCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Spaln_nt2Genome GTGAAGACTCTGC-TGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACCTGCTAAATGCTGCTCAGAATACCACAGAGCCA-CCCTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Pairagon GTGAAGACTCTG-CTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACCTGCTAAATGCTGCTCAGAATACCACAGAGCCA-CCCTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACCTGCTAAATGCTGCTCAGAATACCACAGAGCCACCCTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcagGTAAAAACCCTACCTGCTAAATGCTGCTCAGAATACCACAGAGCCACCCTGGCCCCACCGACCCCGGTAGgtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa Alignment from GeneWise gacctatacttcccctttaggtctgatgctcacctcatctctgcctgcaggtaaaaaccctacctgctaaatgctgctcagaataccacagagccaccctggccccaccgaccccggtaggtaattctgcagtgacctctggcacaaggggtgatacccttagtgattaa #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGC-TGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagggCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGG-GGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatataatataaaata Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGC-TGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagggCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTG-GGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcacctcctttctctgc Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatataatataaaata Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAG-CTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGG-GGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatataatataaaata Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAG-CTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGG-GGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatataatataaaata Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatataatataaaata Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatataatataaaata Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGTTAGACGGTCCTGAAGCGCAAGGTAGCCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatataatataaaata #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcatttcactaaatttcacccctctcctcccccaccaggaGATGATTTGAATATTGACCCCCATGAAATTTTATACCCCACTATTTCAGACACTAT-TACATTGCATGCAggtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from CESAR gtGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcatttcactaaatttcacccctctcctcccccaccaggaGATGATTTGAATATTGACCCCCATGAAATTTTATACCCCACTATTTCAGACACTA-TTACATTGCATGCAggtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCCATGAAATTTTATACCCCACTATTTCAGACACTATTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCCATGAAATTTTATACCCCACTATTTCAGACACTATT-ACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Pairagon ----------------------------------------------------GATGTTTTAAATATTGA-CCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG TTGGTCTCCCTTTCATTTCACTAAATTTCACCCCTCTCCTCCCCCACCAGGAGATGATTTGAATATTGACCCCCATGAAATTTTATACCCCACTATTTCAGACACTATT-ACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCCATGAAATTTTATACCCCACTATTTCAGACACTATTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttcactaaatttcacccctctcctcccccaccagGAGATGATTTGAATATTGACCCCCATGAAATTTTATACCCCACTATTTCAGACACTATTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa Alignment from GeneWise ----------------------------------------------CAAGGTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG TTGGTCTCCCTTTCATTTCACTAAATTTCACCCCTCTCCTCCCCCACCAGGAGATGATTTGAATATTGACCCCCATGAAATTTTATACCCCACTATTTCAGACACTATTACATTGCATGCAGgtaggacattgtagcttagagcctttttcttcagtggtggccagtattaa #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTC-TATTCTTTCTGGACCAggtgagtagtccatttggtctccctttcatttcactaaatttgcctgctgt Alignment from CESAR GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTT-CTATTCTTTCTGGACCAggtgagtagtccatttggtctccctttcatttcactaaatttcacccctct Alignment from Spaln_aa2Genome GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGGTG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATcCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCTATTCTTTCTGGACCAGGTGAgtagtccatttggtctccctttcatttcactaaatttgcctgctgt Alignment from Spaln_nt2Genome GAGCTAAGTTATC-AAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTC-TATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgcctgctgt Alignment from Pairagon GAGCTAAGTTAT-CAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTC-TATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgcctgctgt Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCTATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgcctgctgt Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCTATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgcctgctgt Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCT gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccaggaacttagttatccaagaaagtctccactgtgttcaaactgcttttctattctttctggaccaggtgagtagTCCATT------TGGTCTCCCTTTCATTTCACTAAATTTGCC #### Noc3l_ID7673_2 --> 0 - 1 Original Alignment AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAA-CAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAg ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACCAAAGTACCATCAAGAAGTACCGAAAAGAGCAAA-GAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAggtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from CESAR AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAA-CAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAg ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACCAAAGTACCATCAAGAAGTACCGAAAAGAGCAAA-GAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAggtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Spaln_aa2Genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACCAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Spaln_nt2Genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTT-AAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACCAAAGTACCATCAAGAAGTACCGAAAAGAGCA-AAGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Pairagon AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAA-CAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACCAAAGTACCATCAAGAAGTACCGAAAAGAGCA-AAGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Exonerate_protein2genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACCAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Exonerate_coding2genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACCAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from GeneWise AAGGCGAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtag------AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACCAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGG-ACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagttGCTGAAAGTGGAGATATCCAGGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGCACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAG-AGGACCTTTTACTGCCAATAATTACCCTAATaggtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGG-ACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagttGCTGAAAGTGGAGATATCCAGGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGCACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAG-AGGACCTTTTACTGCCAATAATTACCCTAATaggtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGCACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGG-ACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGCACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAG-AGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGG-ACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGCACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAG-AGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGCACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGCACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGCACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCAT-GCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagatCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATCGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGT-CACTGCTTTTTGCACACCCCCAAAGCCAAGACCCCGC------CCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGaggcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCAT-GCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagatCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATCGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTGTG-TCACTGCTTTTTGCACACCCCCAAAGCCAAGACCCCGCCCT------GGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGaggcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATCGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTCACTGCTTTTTGCACACCCCCAAAG------CCAAGACCCCGCCCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCAT-GCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATCGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTGTG-TCACTGCTTTTTGCACACCCCCAAAGCCAAGACCCCGCCCT------GGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCAT-GCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATCGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTGTG-TCACTGCTTTTTGCACACCCCCAAAGCCAAGACCCCGCCCT------GGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCAT-GCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCT--GTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATCGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTC---ACTGCTTTTTGCACACCC------CCAAAGCCAAGACCCCGCCCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCAT-GCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCT--GTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATCGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTC---ACTGCTTTTTGCACACCC------CCAAAGCCAAGACCCCGCCCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATGTTTCTGAGAGgcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGAC ctgcccttagtatctggtctttaataccctttttctttaaaactttgtagATCACCTTTTTCATTGCCGATTCAATGCTTCAAAGTCCCTCCGACGCCAGAGTTCTGGAAACAAACTGGTGCTTATAAGAGGACAGTTCCATCGCCCTCCCACCTGGGGCCTACTGGGCAGGAAATCCTGTGTCACTGCTTTTTGCACACCC------CCAAAGCCAAGACCCCGCCCTGGTCCTGGGCCTGGCTCAGGTCCTGCTTCTCTTTTCTTGGCCATGTTTCAGAGTCGGCATGCGAAGGACTTAGCCCTACTGGATgtttctgagaggcaaggcttaagcaggatgcaggaaaaaagggcacactatattcacaatt #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCCTCCAACTCCAACCACCAGTTTCCTTCCGAT-GAGGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTggtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from CESAR CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCCTCCAACTCCAACCACCAGTTTCCTTCC-GATGAGGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTggtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCCTCCAACTCCAACCACCAGTTTCCTTCCGATGAGGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Spaln_nt2Genome CTCAGTGTGGATGATT-TCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCCTCCAACTCCAACCACCAGTTTCCTTCCG-ATGAGGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Pairagon CTCAGTGTGGATGAT-TTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCCTCCAACTCCAACCACCAGTTTCCTTCCG-ATGAGGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCCTCCAACTCCAACCACCAGTTTCCTTCCGATGAGGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from Exonerate_coding2genome tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagctcagtgttgatgatcctccaactccaaccaccagtttccttccgatgaggtcaggttcagggccagttcgaatccatcagattggtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgaattccagggtgcaagccaatggcacgcctggcccctgtcatccacagCTCAGTGTTGATGATCCTCCAACTCCAACCACCAGTTTCCTTCCGATGAGGTCAGGTTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgagtggggagaatgtctcagactattacgcagtgttttgtcaacaaca #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGC-CACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaaggtTGTGAGCTCTCTGATCCACACACGCTCCTTCACTTTCAATGTTGCAGAGG-AGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from CESAR gtTGTGAGCTCTCCGGC-CACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaaggtTGTGAGCTCTCTGATCCACACACGCTCCTTCACTTTCAATGTTGCAGAGG-AGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCCACACACGCTCCTTCACTTTCAATGTTGCAGAGGAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGG-CCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCCACACACGCTCCTTCACTTTCAATGTTGCAGAGGAG-ATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Pairagon GTTGTGAGCTCTCCGG-CCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCCACACACGCTCCTTCACTTTCAATGTTGCAGAGGA-GATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCCACACACGCTCCTTCACTTTCAATGTTGCAGAGGAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCCACACACGCTCCTTCACTTTCAATGTTGCAGAGGAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCCACACACGCTCCTTCACTTTCAATGTTGCAGAGGAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGC-TCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGC-TTATGCAGACCTCTACACATCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGC-TCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATG-CTTATGCAGACCTCTACACATCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCTTATGCAGACCTCTACACATCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGC-TCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGC-TTATGCAGACCTCTACACATCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGG-CTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGC-TTATGCAGACCTCTACACATCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCTTATGCAGACCTCTACACATCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Exonerate_coding2genome tcattgccgaaggattagatatagttgcaagattgttgcttatttttcaggaagtaactcatgacatggacatgtgctatggcatgatgggaagtctgttccgcagtagcctcccagcagacactctttgccagcctggttatgcttatgcagacctctacacatcctcattcattaacctgctgtactacccgttcagttacctcttcagagctgcccatgtcctggtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCTTATGCAGACCTCTACACATCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaataccagactaatgagaaagctgaaccagtggtctcttctaccccagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCTCTGCAGCAT---G-TGTATATTCCGGGggtatcgatgctgcttggcagcttcttattcttacaacaactctgtagtgt Alignment from CESAR AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaataccagactaatgagaaagctgaaccagtggtctcttctaccccagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCTCTGCAGCAT---G-TGTATATTCCGGGggtatcgatgctgcttggcagcttcttattcttacaacaactctgtagtgt Alignment from Spaln_aa2Genome AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagactaatgagaaagctgaaccagtggtctcttctaccccagAAAACTGGAAAACTGcAAGATTGGCTCCTACACAGGCCCTCTGCAGCATGT----GTATATTCCGGGGgtatcgatgctgcttggcagcttcttattcttacaacaactctgtagtgt Alignment from Spaln_nt2Genome AAAACTGGAAAACTGA-AAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagactaatgagaaagctgaaccagtggtctcttctaccccagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCTCTGCAGCATG----TGTATATTCCGGGGgtatcgatgctgcttggcagcttcttattcttacaacaactctgtagtgt Alignment from Pairagon AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaataccagactaatgagaaagctgaaccagtggtctcttctaccccagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCTCTGCAGCATG----TGTATATTCCGGGGgtatcgatgctgcttggcagcttcttattcttacaacaactctgtagtgt Alignment from Exonerate_protein2genome AAAACTGGAAAACTG-AAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTAC tgaataccagactaatgagaaagctgaaccagtggtctcttctaccccagAAAACTGGAAAACTGCAAGATTGGCTCCTACACAGGCCCTCTGCAGCATGTGTATATTCCGggggtatcgatgctgcttggcagcttcttattcttacaacaactctgtagtgt Alignment from Exonerate_coding2genome tgaataccagactaatgagaaagctgaaccagtggtctcttctaccccagaaaactggaaaactgcaagattggctcctacacaggccctctgcagcatgtgtatattccgggggtatcgatgctgcttggcagcttcttattcttacaacaactctgtagtgt Alignment from GeneWise tgaataccagactaatgagaaagctgaaccagtggtctcttctaccccagaaaactggaaaactgcaagattggctcctacacaggccctctgcagcatgtgtatattccgggggtatcgatgctgcttggcagcttcttattcttacaacaactctgtagtgt #### Nt5c2_ID10041_12 --> 0 - 0 Original Alignment CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGAC-CTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT tgaggaacttctggcttccatgagaagattatccatctcttctttttcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCCTGATTCTG---GATGCTCGGAAACCACTCTTTT-TGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagtgtgaacaaaatgtattcaatagttatgaaccctcatcctcacac Alignment from CESAR CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGAC-CTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT tgaggaacttctggcttccatgagaagattatccatctcttctttttcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCCTGATTCTG---GATGCTCGGAAACCACTCT-TTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagtgtgaacaaaatgtattcaatagttatgaaccctcatcctcacac Alignment from Spaln_aa2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGAC-CTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT tgaggaacttctggcttccatgagaagattatccatctcttctttttcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACcCTGATTCTG---GATGCTCGGAAACCACTCTT-TTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagtgtgaacaaaatgtattcaatagttatgaaccctcatcctcacac Alignment from Spaln_nt2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACC-TGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT tgaggaacttctggcttccatgagaagattatccatctcttctttttcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCCTGATT---CTGGATGCTCGGAAACCACTCTTTTTG-GTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagtgtgaacaaaatgtattcaatagttatgaaccctcatcctcacac Alignment from Pairagon CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGA-CCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT tgaggaacttctggcttccatgagaagattatccatctcttctttttcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCCTGATTC---TGGATGCTCGGAAACCACTC-TTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagtgtgaacaaaatgtattcaatagttatgaaccctcatcctcacac Alignment from Exonerate_protein2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT tgaggaacttctggcttccatgagaagattatccatctcttctttttcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCCTGAT---TCTGGATGCTCGGAAACCACTCTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagtgtgaacaaaatgtattcaatagttatgaaccctcatcctcacac Alignment from Exonerate_coding2genome GGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT tgaggaacttctggcttccatgagaagattatccatctcttctttttcagcctgGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGAC--CCTGATTCTGGATGCTCGGAAACCACTCTT-TTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagtgtgaacaaaatgtattcaatagttatgaaccctcatcctcacac Alignment from GeneWise CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT tgaggaacttctggcttccatgagaagattatccatctcttctttttcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCCTGATTCT---GGATGCTCGGAAACCACTCTTTTTGGTGAAGGAACAGTGCTGCGTCAGGTTGACACTgtgagtgtgaacaaaatgtattcaatagttatgaaccctcatcctcacac #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACAT-ACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagtTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACCACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTG---G-ACCCAAGGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACAT-ACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagtTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACCACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTGG-A---CCCAAGGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACCACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTGGACCCAAGGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGT---AATACAT-ACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACCACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTGGA----CCCAAGGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGA---TGTAATACA-TACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACCACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTGGA----CCCAAGGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACCACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTGGACCCAAGGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACCACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTGGACCCAAGGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATA------CATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTG---CCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACCACTGCCCTTCAGGAGACACAGGA---------GGAATTAGACTTGGACCCAAGGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTT-GTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTCGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACC-TAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTT-GTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTCGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAAC-CTAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTT-GTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG--ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTcGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCTAAGAtcATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTT-GTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTCGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACC-TAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTT-TTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTCGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACC-TAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTT-TTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG--ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTCGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCTAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTT-TTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG--ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTCGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCTAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTT-GTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAG------GATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTCGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCTAAGATCATCCAGGATCGAGAGAACAGACGGGCAAgtagacagcagacaccattaaaatggactgattgttacaacttttt #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAAT-GCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATCACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGG-TGAACAAATAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from CESAR ATATCTATCATCATCAAT-GCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATCACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAG-GTGAACAAATAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Spaln_aa2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATCACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGTGAACAAATAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Spaln_nt2Genome ATATCTATCATCATCAATG-CTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATCACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAG-GTGAACAAATAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Pairagon ATATCTATCATCATCAAT-GCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATCACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAG-GTGAACAAATAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATCACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGTGAACAAATAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATCACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGTGAACAAATAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtaaccagttgtcctgtatccccccccccccccctgcagATATCAATCATAATTAATCACATCTGCTCCAGCCTACACTGTGCAGAACGAACTAAAGGTGAACAAATAGAGCAGCTCAAGgtaagtatgagtctagtctaagggcaacccctcaacccacatcagagtca #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTT-GTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagatTTGGTAGCTCAGAACATTGTTGTCCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTG-CCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTT-GTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagatTTGGTAGCTCAGAACATTGTTGTCCATTCTAAACCGCAGGAGCTGCATGGCAGCAACT-GCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTT-GTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCcATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGC-CGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTG-TTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGG-ATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCCATTCTAAACCGCAGGAGCTGCATGGCAGCAA--CTGCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTG----TTCTAAACCGCAGAAGCTGTATGGCAGC--------CACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACAT---TGTTGTCCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGCCGCAC---------CATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGC-ATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgaaatgaataggttaaaattagatattatattttattccttaattagTTATTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCGGGCCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAA-TCTTTCTGGAAAGGAAgtgtgtctggcatttaggataatctttttgtagtagtagttgaatggctg Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGC-ATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgaaatgaataggttaaaattagatattatattttattccttaattagTTATTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCGGGCCATTGTGCAAACAGCTCCAAATGTAAAAACTT-TAATCTTTCTGGAAAGGAAgtgtgtctggcatttaggataatctttttgtagtagtagttgaatggctg Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgaaatgaataggttaaaattagatattatattttattccttaattagTTATTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCGGGCCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAATCTTTCTGGAAAGGAAgtgtgtctggcatttaggataatctttttgtagtagtagttgaatggctg Alignment from Spaln_nt2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGC-ATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgaaatgaataggttaaaattagatattatattttattccttaattagTTATTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCGGGCCATTGTGCAAACAGCTCCAAATGTAAA-AACTTTAATCTTTCTGGAAAGGAAgtgtgtctggcatttaggataatctttttgtagtagtagttgaatggctg Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAG-CATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgaaatgaataggttaaaattagatattatattttattccttaattagTTATTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCGGGCCATTGTGCAAACAGCTCCAAATGTAAAAACTTT-AATCTTTCTGGAAAGGAAgtgtgtctggcatttaggataatctttttgtagtagtagttgaatggctg Alignment from Exonerate_protein2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgaaatgaataggttaaaattagatattatattttattccttaattagTTATTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCGGGCCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAATCTTTCTGGAAAGGAAgtgtgtctggcatttaggataatctttttgtagtagtagttgaatggctg Alignment from Exonerate_coding2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgaaatgaataggttaaaattagatattatattttattccttaattagTTATTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCGGGCCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAATCTTTCTGGAAAGGAAgtgtgtctggcatttaggataatctttttgtagtagtagttgaatggctg Alignment from GeneWise CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtgaaatgaataggttaaaattagatattatattttattccttaattagTTATTGTCTTTGAATTTGAGCAGCAACCGGCTATTCAAGCTGGATGACATGTCGGGCCATTGTGCAAACAGCTCCAAATGTAAAAACTTTAATCTTTCTGGAAAGGAAgtgtgtctggcatttaggataatctttttgtagtagtagttgaatggctg #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGAC-TCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaattggattatacatatctaggggcctggcttgatgcaccccctaggTACTTTGTCATTTGTGACCTTGGGAGACCGTCAGGGTCTTCAGTATGCCT-CCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCaggtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from CESAR gTACTATGTAATTTATGAC-TCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaattggattatacatatctaggggcctggcttgatgcaccccctaggTACTTTGTCATTTGTGACCTTGGGAGACCGTCAGGGTCTTCAGTATGCC-TCCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCaggtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACCTTGGGAGACCGTCAGGGTCTTCAGTATGCCTCCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Spaln_nt2Genome GTACTATGTAATTTATGAC-TCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACCTTGGGAGACCGTCAGGGTCTTCAGTATGCCTC-CATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Pairagon GTACTATGTAATTTATGA-CTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACCTTGGGAGACCGTCAGGGTCTTCAGTATGCCT-CCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACCTTGGGAGACCGTCAGGGTCTTCAGTATGCCTCCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACCTTGGGAGACCGTCAGGGTCTTCAGTATGCCTCCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACCTTGGGAGACCGTCAGGGTCTTCAGTATGCCTCCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg agactccttagctcctcaggccatttgaccttttccttttctgttgccagtaGATGGGAAGTCTCGACGACTCTCTACATGCCTTTGCAAGGACATTCA-TGCAGTTCCTGCAAGCAATACGgggtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from CESAR tgGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg agactccttagctcctcaggccatttgaccttttccttttctgttgccagtaGATGGGAAGTCTCGACGACTCTCTACATGCCTTTGCAAGGACATTCA-TGCAGTTCCTGCAAGCAATACGgggtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGACGACTCTCTACATGCCTTTGCAAGGACATTCATGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGACGACTCTCTACATGCCTTTGCAAGGACATTCA-TGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Pairagon TGGATGGGAAGTCTCGA-GATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGACGACTCTCTACATGCCTTTGCAAGGACATTCA-TGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Exonerate_protein2genome AAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgTTGCCAGTAGATGGGAAGTCTCGACGACTCTCTACATGCCTTTGCAAGGACATTCATGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Exonerate_coding2genome AAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgTTGCCAGTAGATGGGAAGTCTCGACGACTCTCTACATGCCTTTGCAAGGACATTCATGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from GeneWise agactccttagctcctcaggccatttgaccttttccttttctgttgccagtagatgggaagtctcgacgactctctacatgcctttgcaaggacattcatgcagttcctgcaagcaatacggggtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG accagcttgatactgttgtcatatagtgttgctctgttctaactccttagTTCATGGACTTTATTGAGCGGGTGGAGAAGCAGACCTCTGTCACTGACCTGCTTGCCTCCTTCAATGACCAAAGCACTTCACGACTACCTTGTGGTCTACCTGCAGCTGCTAACCT-AGGCTACGTACAACGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGG---------------AGTCAAGAGgtaattcctcccctatcatctgcactggggccccccttttttttcttcat Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG accagcttgatactgttgtcatatagtgttgctctgttctaactccttagTTCATGGACTTTATTGAGCGGGTGGAGAAGCAGACCTCTGTCACTGACCTGCTTGCCTCCTTCAATGACCAAAGCACTTCACGACTACCTTGTGGTCTACCTGCAGCTGCTAACC-TAGGCTACGTACAACGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGAGT---------------CAAGAGgtaattcctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAG accagcttgatactgttgtcatatagtgttgctctgttctaactccttagTTCATGGACTTTATTGAGCGGGTGGAGAAGCAGACCTCTGTCACTGACCTGCTTGCCTCCTTCAATGACCAAAGCACTTCACGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTAGGCTACGTACAACGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGAGTCAAGAGgtaattcctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAG accagcttgatactgttgtcatatagtgttgctctgttctaactccttagTTCATGGACTTTATTGAGCGGGTGGAGAAGCAGACCTCTGTCACTGACCTGCTTGCCTCCTTCAATGACCAAAGCACTTCACGACTACCTTGTGGTCTACCTGCAGCTGCTAACCT-AGGCTACGTACAACGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGA--GTCAA-GAGgtaattcctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCA-GACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGA accagcttgatactgttgtcatatagtgttgctctgttctaactccttagTTCATGGACTTTATTGAGCGGGTGGAGAAGCAGACCTCTGTCACTGACCTGCTTGCCTCCTTCAATGACCAAAGCACTTCACGACTACCTTGTGGTCTACCTGCAGCTGCTAACCT-AGGCTACGTACAACGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGAgtcaagaggtaattcctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTG accagcttgatactgttgtcatatagtgttgctctgttctaactccttagTTCATGGACTTTATTGAGCGGGTGGAGAAGCAGACCTCTGTCACTGACCTGCTTGCCTCCTTCAATGACCAAAGCACTTCACGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTAGGCTACGTACAACGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGgccggagtcaagaggtaattcctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTG accagcttgatactgttgtcatatagtgttgctctgttctaactccttagTTCATGGACTTTATTGAGCGGGTGGAGAAGCAGACCTCTGTCACTGACCTGCTTGCCTCCTTCAATGACCAAAGCACTTCACGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTAGGCTACGTACAACGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGgccggagtcaagaggtaattcctcccctatcatctgcactggggccccccttttttttcttcat Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGG- accagcttgatactgttgtcatatagtgttgctctgttctaactccttagTTCATGGACTTTATTGAGCGGGTGGAGAAGCAGACCTCTGTCACTGACCTGCTTGCCTCCTTCAATGACCAAAGCACTTCACGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTAGGCTACGTACAACGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGAgtcaagaggtaattcctcccctatcatctgcactggggccccccttttttttcttcat #### Otub1_ID2061_5 --> 1 - 0 Original Alignment gTTCAAAGCCGTGTCTGCCAAGAGT-AAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacaggTTTAGAGCGGTGTCAGCTAAGAGTCAAAGAAGACTTGGTGTCCCAGGGCATCACTG-GTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from CESAR gTTCAAAGCCGTGTCTGCCAAGAGT-AAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacaggTTTAGAGCGGTGTCAGCTAAGAGTCAAAGAAGACTTGGTGTCCCAGGGCATCACT-GGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Spaln_aa2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGTCAGCTAAGAGTCAAAGAAGACTTGGTGTCCCAGGGCATCACTGGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Spaln_nt2Genome GTTCAAAGCCGTGTCTGCCAAGAGT-AAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGTCAGCTAAGAGTCAAAGAAGACTTGGTGTCCCAGGGCATCACTG-GTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Pairagon GTTCAAAGCCGTGTCTGCCAAGAGT-AAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGTCAGCTAAGAGTCAAAGAAGACTTGGTGTCCCAGGGCATCACTG-GTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Exonerate_protein2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGTCAGCTAAGAGTCAAAGAAGACTTGGTGTCCCAGGGCATCACTGGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Exonerate_coding2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGTCAGCTAAGAGTCAAAGAAGACTTGGTGTCCCAGGGCATCACTGGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from GeneWise GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGTCAGCTAAGAGTCAAAGAAGACTTGGTGTCCCAGGGCATCACTGGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTAT-GTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt tagtgctctcagaggaatataattcttggttgcatattttatattcacagaaCCACTAGATGTGGTGGGTCGTGTGATGCTGTATCATCAATGGTGCTATAACAACACACCAGCTTCCCATCG-TGAAGCTATGCTGACCTGCAGGCATAAGttgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTAT-GTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt tagtgctctcagaggaatataattcttggttgcatattttatattcacagaaCCACTAGATGTGGTGGGTCGTGTGATGCTGTATCATCAATGGTGCTATAACAACACACCAGCTTCCCATCG-TGAAGCTATGCTGACCTGCAGGCATAAGttgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATCATCAATGGTGCTATAACAACACACCAGCTTCCCATCGTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATG-TCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATCATCAATGGTGCTATAACAACACACCAGCTTCCCATCG-TGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTAT-GTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATCATCAATGGTGCTATAACAACACACCAGCTTCCCATCG-TGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATCATCAATGGTGCTATAACAACACACCAGCTTCCCATCGTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATCATCAATGGTGCTATAACAACACACCAGCTTCCCATCGTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT tagtgctctcagaggaatataattcttggttgcatattttatattcacagAACCACTAGATGTGGTGGGTCGTGTGATGCTGTATCATCAATGGTGCTATAACAACACACCAGCTTCCCATCGTGAAGCTATGCTGACCTGCAGGCATAAGTTgtgagtctaatatcaggagcttcagggaattagcttggactaatagatga #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTT-CTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgttcggaacaaatacttcactctttactcattacctttcattgcaggtTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGCAGGTATAGCAGTACATTTCCTGGATCCTGCATGGAGAGATCTATTCA-CCAGTCAGAGCCCCTAGTGTCAggtaagtaccctcagtaggaatccgctacctttggtactagcccccatcac Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTT-CTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtgttcggaacaaatacttcactctttactcattacctttcattgcaggtTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGCAGGTATAGCAGTACATTTCCTGGATCCTGCATGGAGAGATCTATTCA-CCAGTCAGAGCCCCTAGTGTCAggtaagtaccctcagtaggaatccgctacctttggtactagcccccatcac Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaacaaatacttcactctttactcattacctttcattgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGCAGGTATAGCAGTACATTTCCTGGATCCTGCATGGAGAGATCTATTCACCAGTCAGAGCCCCTAGTGTCAGgtaagtaccctcagtaggaatccgctacctttggtactagcccccatcac Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTG-ATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaacaaatacttcactctttactcattacctttcattgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGCAGGTATAGCAGTACATTTCCTGGATCCTGCATGGAGAGATCTATTCA-CCAGTCAGAGCCCCTAGTGTCAGgtaagtaccctcagtaggaatccgctacctttggtactagcccccatcac Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTT-GATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaacaaatacttcactctttactcattacctttcattgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGCAGGTATAGCAGTACATTTCCTGGATCCTGCATGGAGAGATCTATTCA-CCAGTCAGAGCCCCTAGTGTCAGgtaagtaccctcagtaggaatccgctacctttggtactagcccccatcac Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaacaaatacttcactctttactcattacctttcattgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGCAGGTATAGCAGTACATTTCCTGGATCCTGCATGGAGAGATCTATTCACCAGTCAGAGCCCCTAGTGTCAGgtaagtaccctcagtaggaatccgctacctttggtactagcccccatcac Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaacaaatacttcactctttactcattacctttcattgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGCAGGTATAGCAGTACATTTCCTGGATCCTGCATGGAGAGATCTATTCACCAGTCAGAGCCCCTAGTGTCAGgtaagtaccctcagtaggaatccgctacctttggtactagcccccatcac Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtgttcggaacaaatacttcactctttactcattacctttcattgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGCAGGTATAGCAGTACATTTCCTGGATCCTGCATGGAGAGATCTATTCACCAGTCAGAGCCCCTAGTGTCAGgtaagtaccctcagtaggaatccgctacctttggtactagcccccatcac #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTAGAACAC-GTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACCGTGTCCCGGGAGCAAATTCGAGAAGTGGAGG-GGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from CESAR GTGGGCTTTGGGCTAGAACAC-GTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACCGTGTCCCGGGAGCAAATTCGAGAAGTGGAG-GGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACCGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTAGAACAC-GTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACCGTGTCCCGGGAGCAAATTCGAGAAGTGGAGG-GGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Pairagon GTGGGCTTTGGGCTAGAACA-CGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACCGTGTCCCGGGAGCAAATTCGAGAAGTGGAGG-GGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACCGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACCGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from GeneWise GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACCGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGAC-AACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG cggatgttgcaaaaccctcattgcagtcattgcttctgaaacatttgcagatCGCTCCCCAGACATTGACCAATTATTCAGAAGAGGAGGAAGAAAGCTTCTCCT-AGCGCAAGATGACACCGATGATCCGCTGCATGGGCAAgtaataatctgacagtgtacgagtcgaagcagggtgaggcatcacctcac Alignment from CESAR atCGCTCCCCAGATATTGAC-AACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG cggatgttgcaaaaccctcattgcagtcattgcttctgaaacatttgcagatCGCTCCCCAGACATTGACCAATTATTCAGAAGAGGAGGAAGAAAGCTTCTCC-TAGCGCAAGATGACACCGATGATCCGCTGCATGGGCAAgtaataatctgacagtgtacgagtcgaagcagggtgaggcatcacctcac Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGAC-AACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG cggatgttgcaaaaccctcattgcagtcattgcttctgaaacatttgcagATCGCTCCCCAGACATTGACcAATTATTCAGAAGAGGAGGAAGAAAGCTTCTCCTA-GCGCAAGATGACACCGATGATCCGCTGCATGGGCAAgtaataatctgacagtgtacgagtcgaagcagggtgaggcatcacctcac Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGAC-AACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG cggatgttgcaaaaccctcattgcagtcattgcttctgaaacatttgcagATCGCTCCCCAGACATTGACCAATTATTCAGAAGAGGAGGAAGAAAGCTTCTCCT-AGCGCAAGATGACACCGATGATCCGCTGCATGGGCAAgtaataatctgacagtgtacgagtcgaagcagggtgaggcatcacctcac Alignment from Pairagon ATCGCTCCCCAGATATTGA-CAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG cggatgttgcaaaaccctcattgcagtcattgcttctgaaacatttgcagATCGCTCCCCAGACATTGACCAATTATTCAGAAGAGGAGGAAGAAAGCTTCTCCT-AGCGCAAGATGACACCGATGATCCGCTGCATGGGCAAgtaataatctgacagtgtacgagtcgaagcagggtgaggcatcacctcac Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG cggatgttgcaaaaccctcattgcagtcattgcttctgaaacatttgcagATCGCTCCCCAGACATTGACCAATTATTCAGAAGAGGAGGAAGAAAGCTTCTCCTAGCGCAAGATGACACCGATGATCCGCTGCATGGGCAAgtaataatctgacagtgtacgagtcgaagcagggtgaggcatcacctcac Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG cggatgttgcaaaaccctcattgcagtcattgcttctgaaacatttgcagATCGCTCCCCAGACATTGACCAATTATTCAGAAGAGGAGGAAGAAAGCTTCTCCTAGCGCAAGATGACACCGATGATCCGCTGCATGGGCAAgtaataatctgacagtgtacgagtcgaagcagggtgaggcatcacctcac Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG cggatgttgcaaaaccctcattgcagtcattgcttctgaaacatttgcagATCGCTCCCCAGACATTGACCAATTATTCAGAAGAGGAGGAAGAAAGCTTCTCCTAGCGCAAGATGACACCGATGATCCGCTGCATGGGCAAgtaataatctgacagtgtacgagtcgaagcagggtgaggcatcacctcac #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtaggACAGAGGTGATGTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTCTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCAT-CTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtaggACAGAGGTGATGTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTCTCCAATCCAATTTCTATTCCTTCAAATCTAGTGT-CATCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTCTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGG-CCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTCTCCAATCCAATTTCTATTCCTTCAAATCTAGTGT-CATCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCC-TGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTCTCCAATCCAATTTCTATTCCTTCAAATCTAGTGT-CATCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTT tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTCTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTT tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTCTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATACGG tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTCTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTTTGTCATTCTTTtcctgctttgttggctgacagaaactgagtt #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCT-AGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccaggcAGCAGTGAGCAGCCCCTTCCACCAGGCCCTCAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGG-TGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCT-AGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccaggcAGCAGTGAGCAGCCCCTTCCACCAGGCCCTCAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGG-GTGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTCAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGTGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCT-AGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTCAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGG-GGTGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCT-AGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTCAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGG-GGTGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTCAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGTGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTCAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGTGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTCAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGTGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taagccacagaatgcattaccatacacctttctcctgtattgctttttagaCTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACC-TCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAggtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taagccacagaatgcattaccatacacctttctcctgtattgctttttagaCTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAAC-CTCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAggtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCTCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAA-CCTCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACC-TCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAAT--CATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCT---CCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCG-GACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAAT--CATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCT---CCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGAC-TCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGATGCACGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCT-CCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCAC-GCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagcCTTGAGCCCTTCCTCTATGGCCTACGTCGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCC-TGATGAGTGGGTCTTTACTGACATGGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCAC-GCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCAC------CAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagcCTTGAGCCCTTCCTCTATGGCCTACGTCGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCC-CTGATGAGTGGGTCTTTACTGACATGGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTCGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCTGATGAGTGGGTCTTTACTGACATGGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCA-CGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCA------G ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTCGCTCTGTTCAAGGGAGATTTCAGGATCACCTC-CCCCCTGATGAGTGGGTCTTTACTGACATGGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCA-CGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCA------------------------------------------------------------ ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTCGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCC-TGATGAGTGGGTCTTTACTGACATGGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGGTATCCTATAAATAAGGCAGGGTAGGGGTGGGTGCCTTCCCCTTACCTCA Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTCGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCTGATGAGTGGGTCTTTACTGACATGGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTCGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCTGATGAGTGGGTCTTTACTGACATGGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCAC------CAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTCGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCTGATGAGTGGGTCTTTACTGACATGGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTT-ACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTCACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCC-GGCTCTGGGAACAGCATCACACAGCATGTCAGCCaggtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTT-ACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTCACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCC-GGCTCTGGGAACAGCATCACACAGCATGTCAGCCaggtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTCACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTT-ACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTCACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCC-GGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTT-ACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTCACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCC-GGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTCACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTCACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTCACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAG-CACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg aggcaatgggtttacttggtttacttgacctggcttacctctccccacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACCATTTGACGCGCTCACTGCAACACATGCTTTGTG-TGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAG-CACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg aggcaatgggtttacttggtttacttgacctggcttacctctccccacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACCATTTGACGCGCTCACTGCAACACATGCTTTGT-GTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACCATTTGACGCGCTCACTGCAACACATGCTTTGTGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGC-ACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACCATTTGACGCGCTCACTGCAACACATGCTTTGT-GTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTAT-GAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACCATTTGACGCGCTCACTGCAACACATGCTTTGT-GTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACCATTTGACGCGCTCACTGCAACACATGCTTTGTGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACCATTTGACGCGCTCACTGCAACACATGCTTTGTGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTG---ACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACCATTTGACGCGCTCACTGCAACACATGCTTTGTGT---GATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTG-GGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagacTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGCGGCAGTGCAGTATTCATTATGTCCTACACAAGAC-CCTCAAGTTCTGGGAGAGAGACTACaagtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTG-GGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagacTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGCGGCAGTGCAGTATTCATTATGTCCTACACAAGAC-CCTCAAGTTCTGGGAGAGAGACTACaagtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGCGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTG-GGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGCGGCAGTGCAGTATTCATTATGTCCTACACAAGA-CCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTG-GGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGCGGCAGTGCAGTATTCATTATGTCCTACACAAGA-CCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGCGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGCGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGCGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTG-TGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTT-GTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTGTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTG-TGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTG-TGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTGTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTGTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTACATGTGTGTGGTGATCGCTGTGCTCATCTTTGTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta #### Pcnxl3_ID1175_18 --> 1 - 0 Original Alignment gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAG-CGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tagcatggaaattatcagggtgtaaagctctgtctcctcttctcttccaggTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCC-AGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaggaaggcagcagtgagtgtttacctctatgcagctctggaaggtcta Alignment from CESAR gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAG-CGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tagcatggaaattatcagggtgtaaagctctgtctcctcttctcttccaggTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAAC-CCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaggaaggcagcagtgagtgtttacctctatgcagctctggaaggtcta Alignment from Spaln_aa2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tagcatggaaattatcagggtgtaaagctctgtctcctcttctcttccagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaggaaggcagcagtgagtgtttacctctatgcagctctggaaggtcta Alignment from Spaln_nt2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGC-GGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tagcatggaaattatcagggtgtaaagctctgtctcctcttctcttccagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAA-CCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaggaaggcagcagtgagtgtttacctctatgcagctctggaaggtcta Alignment from Pairagon GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAG-CGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tagcatggaaattatcagggtgtaaagctctgtctcctcttctcttccagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAA-CCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaggaaggcagcagtgagtgtttacctctatgcagctctggaaggtcta Alignment from Exonerate_protein2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tagcatggaaattatcagggtgtaaagctctgtctcctcttctcttccagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaggaaggcagcagtgagtgtttacctctatgcagctctggaaggtcta Alignment from Exonerate_coding2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tagcatggaaattatcagggtgtaaagctctgtctcctcttctcttccagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaggaaggcagcagtgagtgtttacctctatgcagctctggaaggtcta Alignment from GeneWise GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tagcatggaaattatcagggtgtaaagctctgtctcctcttctcttccagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCCGGAGCCTAGAGACAGCCCGGGTGGAACCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaggaaggcagcagtgagtgtttacctctatgcagctctggaaggtcta #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACC-TGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagtaTTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCCTGCCTCACGTACCTCTTGGAACAGATAG-TATGCATGGTTTTGGAGGCACAggtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACC-TGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagtaTTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCCTGCCTCACGTACCTCTTGGAACAGATA-GTATGCATGGTTTTGGAGGCACAggtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCCTGCCTCACGTACCTCTTGGAACAGATAGTATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACAC-CTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCCTGCCTCACGTACCTCTTGGAACAGATAG-TATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACA-CCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCCTGCCTCACGTACCTCTTGGAACAGATAG-TATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCCTGCCTCACGTACCTCTTGGAACAGATAGTATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCCTGCCTCACGTACCTCTTGGAACAGATAGTATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCCTGCCTCACGTACCTCTTGGAACAGATAGTATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTC-TGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atgatcaagaatcctcattggcctatgcccctctgaacccttgcctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTCTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATG-CCTTGGGACAACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTggtgagccagtacaagatagatcaagggactgagtctgcatgctgtagccc Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTAC-TTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atgatcaagaatcctcattggcctatgcccctctgaacccttgcctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTCTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCT-TGGGACAACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTggtgagccagtacaagatagatcaagggactgagtctgcatgctgtagccc Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTAC-TTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atgatcaagaatcctcattggcctatgcccctctgaacccttgcctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACtTTCTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGC-CTTGGGACAACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgagccagtacaagatagatcaagggactgagtctgcatgctgtagccc Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACT-TCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atgatcaagaatcctcattggcctatgcccctctgaacccttgcctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTCTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATG-CCTTGGGACAACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgagccagtacaagatagatcaagggactgagtctgcatgctgtagccc Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTAC-TTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atgatcaagaatcctcattggcctatgcccctctgaacccttgcctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTCTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCTT-GGGACAACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgagccagtacaagatagatcaagggactgagtctgcatgctgtagccc Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTAC-TTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGG--ACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atgatcaagaatcctcattggcctatgcccctctgaacccttgcctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTCTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCTTGGGACAACT---CAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgagccagtacaagatagatcaagggactgagtctgcatgctgtagccc Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTAC-TTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGG--ACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atgatcaagaatcctcattggcctatgcccctctgaacccttgcctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTCTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCTTGGGACAACT---CAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgagccagtacaagatagatcaagggactgagtctgcatgctgtagccc Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atgatcaagaatcctcattggcctatgcccctctgaacccttgcctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTCTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCTTGGGACAACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgagccagtacaagatagatcaagggactgagtctgcatgctgtagccc #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gctccacccaactctgtttgtgacttatcctgtgttggctttttcttcagcaCCTGAGGAGACGGGCCAGCGGGAATGCACAAGCAATGCACAGGAGAGCACAGGCTATCTGGAGACGTCACAATGCAGGCAGCA-CCCTACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtaagtagctggatgatcccagtgcagaaggactgggtctcctaatttgt Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gctccacccaactctgtttgtgacttatcctgtgttggctttttcttcagcaCCTGAGGAGACGGGCCAGCGGGAATGCACAAGCAATGCACAGGAGAGCACAGGCTATCTGGAGACGTCACAATGCAGGCA-GCACCCTACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtaagtagctggatgatcccagtgcagaaggactgggtctcctagtgccc Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctccacccaactctgtttgtgacttatcctgtgttggctttttcttcagCACCTGAGGAGACGGGCCAGCGGGAATGCACAAGCAATGCACAGGAGAGCACAGGCTATCTGGAGACGTCACAATGCAGGCAGCACCCTACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagtagctggatgatcccagtgcagaaggactgggtctcctaatttgt Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctccacccaactctgtttgtgacttatcctgtgttggctttttcttcagCACCTGAGGAGACGGGCCAGCGGGAATGCACAAGCAATGCACAGGAGAGCACAGGCTATCTGGAGACGTCACAATGCAGGCAGC-ACCCTACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagtagctggatgatcccagtgcagaaggactgggtctcctaatttgt Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctccacccaactctgtttgtgacttatcctgtgttggctttttcttcagCACCTGAGGAGACGGGCCAGCGGGAATGCACAAGCAATGCACAGGAGAGCACAGGCTATCTGGAGACGTCACAATGCAGGCAGC-ACCCTACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagtagctggatgatcccagtgcagaaggactgggtctcctaatttgt Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctccacccaactctgtttgtgacttatcctgtgttggctttttcttcagCACCTGAGGAGACGGGCCAGCGGGAATGCACAAGCAATGCACAGGAGAGCACAGGCTATCTGGAGACGTCACAATGCAGGCAGCACCCTACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagtagctggatgatcccagtgcagaaggactgggtctcctaatttgt Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctccacccaactctgtttgtgacttatcctgtgttggctttttcttcagCACCTGAGGAGACGGGCCAGCGGGAATGCACAAGCAATGCACAGGAGAGCACAGGCTATCTGGAGACGTCACAATGCAGGCAGCACCCTACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagtagctggatgatcccagtgcagaaggactgggtctcctaatttgt Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctccacccaactctgtttgtgacttatcctgtgttggctttttcttcagCACCTGAGGAGACGGGCCAGCGGGAATGCACAAGCAATGCACAGGAGAGCACAGGCTATCTGGAGACGTCACAATGCAGGCAGCACCCTACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtaagtagctggatgatcccagtgcagaaggactgggtctcctaatttgt #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTG-GCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGCGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTG-TACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCaggtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTG-GCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGCGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTT-GTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCaggtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTG-GCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGcGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGT-ACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTG-GCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGCGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTG-TACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTG-GCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGCGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTG-TACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGCGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGCGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGCGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta #### Pcsk5_ID4264_19 --> 2 - 2 Original Alignment ggGCCGGAGCAGATGGATGTATTAACTGCACCGAG-GGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gggtatgacatgtactggccgctcgtcttattttttccccactctaccagggGCTGGAGCAGATGGATTTATAAATTGCACTGAGCGGGTATGTCATGGAAGAGGGAAAATGTGTTC-GAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from CESAR ggGCCGGAGCAGATGGATGTATTAACTGCACCGAG-GGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gggtatgacatgtactggccgctcgtcttattttttccccactctaccagggGCTGGAGCAGATGGATTTATAAATTGCACTGAGCGGGTATGTCATGGAAGAGGGAAAATGTGTT-CGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Spaln_aa2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccactctaccagGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGCGGGTATGTCATGGAAGAGGGAAAATGTGTTCGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Spaln_nt2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAG-GGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccactctaccagGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGCGGGTATGTCATGGAAGAGGGAAAATGTGTTC-GAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Pairagon GGGCCGGAGCAGATGGATGTATTAACTGCACCGAG-GGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccactctaccagGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGCGGGTATGTCATGGAAGAGGGAAAATGTGTTC-GAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Exonerate_protein2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccaCTCTACCAGGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGCGGGTATGTCATGGAAGAGGGAAAATGTGTTCGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Exonerate_coding2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccaCTCTACCAGGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGCGGGTATGTCATGGAAGAGGGAAAATGTGTTCGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from GeneWise GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccactctaccagGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGCGGGTATGTCATGGAAGAGGGAAAATGTGTTCGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAG-CTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctaggtGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACCTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGG-CACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAG-CTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctaggtGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACCTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAG-GCACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACCTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGCACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGC-TGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACCTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGG-CACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAG-CTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACCTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGG-CACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACCTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGCACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACCTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGCACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACCTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGCACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gattaaagagagtgaagaacatcagtaagtctgttgttcccttttcccagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGATTTCTCTCAGAGCAGGCTGACCTTTGCCCAGGCCTGCCAGGATACTGGGGTCC-ATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAggtaagttaagaaacaaaacattgaacctggaagtacaggcattctgctgc Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gattaaagagagtgaagaacatcagtaagtctgttgttcccttttcccagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGATTTCTCTCAGAGCAGGCTGACCTTTGCCCAGGCCTGCCAGGATACTGGGGTC-CATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAggtaagttaagaaacaaaacattgaacctggaagtacaggcattctgctca Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtaagtctgttgttcccttttcccagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGATTTCTCTCAGAGCAGGCTGACCTTTGCCCAGGCCTGCCAGGATACTGGGGTCCATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtaagttaagaaacaaaacattgaacctggaagtacaggcattctgctgc Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtaagtctgttgttcccttttcccagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGATTTCTCTCAGAGCAGGCTGACCTTTGCCCAGGCCTGCCAGGATACTGGGGTCC-ATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtaagttaagaaacaaaacattgaacctggaagtacaggcattctgctgc Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGA-CTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtaagtctgttgttcccttttcccagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGATTTCTCTCAGAGCAGGCTGACCTTTGCCCAGGCCTGCCAGGATACTGGGGTCC-ATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtaagttaagaaacaaaacattgaacctggaagtacaggcattctgctgc Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtaagtctgttgttcccttttcccagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGATTTCTCTCAGAGCAGGCTGACCTTTGCCCAGGCCTGCCAGGATACTGGGGTCCATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtaagttaagaaacaaaacattgaacctggaagtacaggcattctgctgc Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtaagtctgttgttcccttttcccagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGATTTCTCTCAGAGCAGGCTGACCTTTGCCCAGGCCTGCCAGGATACTGGGGTCCATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtaagttaagaaacaaaacattgaacctggaagtacaggcattctgctgc Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gattaaagagagtgaagaacatcagtaagtctgttgttcccttttcccagGAAAATGGTGAAGATGCAGTGCATCCAGGCTATGGATTTCTCTCAGAGCAGGCTGACCTTTGCCCAGGCCTGCCAGGATACTGGGGTCCATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAGGGTGGAAGCCCAGGCTGTTGCCATAGATGCAGgtaagttaagaaacaaaacattgaacctggaagtacaggcattctgctgc #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCA-GCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGCGCTTTTGGGAACAGAGCACTGTTTGTCGAGA-GTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCA-GCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGCGCTTTTGGGAACAGAGCACTGTTTGTCG-AGAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGCGCTTTTGGGAACAGAGCACTGTTTGTCGAGAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCA-GCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGCGCTTTTGGGAACAGAGCACTGTTTGTCGAG-AGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCA-GCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGCGCTTTTGGGAACAGAGCACTGTTTGTCGAG-AGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGCGCTTTTGGGAACAGAGCACTGTTTGTCGAGAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGCGCTTTTGGGAACAGAGCACTGTTTGTCGAGAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGCGCTTTTGGGAACAGAGCACTGTTTGTCGAGAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg tctttggaatcccagaagccagcgtggcttctctttcttctctttcataggaCATGTTATGGTTAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTC-TGCAGTCCCTATAggtggggtatggtacctgtttatatcttaatgagaagatgtgtcggatgat Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg tctttggaatcccagaagccagcgtggcttctctttcttctctttcataggaCATGTTATGGTTAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAG-TTCTGCAGTCCCTATAggtggggtatggtacctgtttatatcttaatgagaagatgtgtcggatgat Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctttggaatcccagaagccagcgtggcttctctttcttctctttcatagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCAcGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCT-GCAGTCCCTATAGgtggggtatggtacctgtttatatcttaatgagaagatgtgtcggatgat Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctttggaatcccagaagccagcgtggcttctctttcttctctttcatagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTT-CTGCAGTCCCTATAGgtggggtatggtacctgtttatatcttaatgagaagatgtgtcggatgat Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCAATCCC-TGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctttggaatcccagaagccagcgtggcttctctttcttctctttcatagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTT-CTGCAGTCCCTATAGgtggggtatggtacctgtttatatcttaatgagaagatgtgtcggatgat Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctttggaatcccagaagccagcgtggcttctctttcttctctttcatagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCTGCAGTCCCTATAGgtggggtatggtacctgtttatatcttaatgagaagatgtgtcggatgat Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctttggaatcccagaagccagcgtggcttctctttcttctctttcatagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCTGCAGTCCCTATAGgtggggtatggtacctgtttatatcttaatgagaagatgtgtcggatgat Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctttggaatcccagaagccagcgtggcttctctttcttctctttcatagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCTGCAGTCCCTATAGgtggggtatggtacctgtttatatcttaatgagaagatgtgtcggatgat #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGC-CTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCCTGCTGAAGCCGGCAGCCTGTACAATGCTAG-CAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAggtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from CESAR GACATGGCGGGC-CTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCCTGCTGAAGCCGGCAGCCTGTACAATGCTA-GCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAggtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagggcatagCAG------GCCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGC-AGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Spaln_nt2Genome GACATGGCGGGCC-TGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCCTGCTGAAGCCGGCAGCCTGTACAATGCTAG-CAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Pairagon GACATGGCGGG-CCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCCTGCTGAAGCCGGCAGCCTGTACAATGCTAG-CAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAG-GAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagcATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAACGGGGGCCAAAAACAGAAGGAGAAGAATCAGA-GAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAG-GAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagcATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAACGGGGGCCAAAAACAGAAGGAGAAGAATCAGA-GAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAACGGGGGCCAAAAACAGAAGGAGAAGAATCAGAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAG-GAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAACGGGGGCCAAAAACAGAAGGAGAAGAATCAG-AGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAG-GAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAACGGGGGCCAAAAACAGAAGGAGAAGAATCAG-AGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAACGGGGGCCAAAAACAGAAGGAGAAGAATCAGAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAACGGGGGCCAAAAACAGAAGGAGAAGAATCAGAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAACGGGGGCCAAAAACAGAAGGAGAAGAATCAGAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGT-GTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGCGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGG-GGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGT-GGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGCGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAG-GGGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGT-GGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTgGGCGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGGG-GGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGT-GTGGAAG------TGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGCGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGG-GGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGT-GGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGCGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGG-GGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAGTGTAC------TACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGCGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGGGGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAGTGTACTAC------------CGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGCGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGGG------GGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACT-CCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCCGTCCTTGCCACTCCGGGAAGAGAGCT-AGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCA-GCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCCGTCCTTGCCACTCCGGGAAGAGAGC-TAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCCGTCCTTGCCACTCCGGGAAGAGAGCTAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAG-CCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCCGTCCTTGCCACTCCGGGAAGAGAGCT-AGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAG-CCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCCGTCCTTGCCACTCCGGGAAGAGAGCT-AGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCCGTCCTTGCCACTCCGGGAAGAGAGCTAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCCGTCCTTGCCACTCCGGGAAGAGAGCTAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCCGTCCTTGCCACTCCGGGAAGAGAGCTAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAG-GCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGCGCAAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGA-GGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAG-GCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGCGCAAAGAAAGAGCTGTCACGCATCGAAAAGGCACTG-AGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGCGCAAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGAGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAG-GCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGCGCAAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGA-GGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAG-GCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGCGCAAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGA-GGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGCGCAAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGAGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from Exonerate_coding2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGCGCAAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGAGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAGAAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatcttactcaaaggagatggaactctttttttgtctctctaatacagAAGAAGAAAGGTAAAAAGGAAAGGGAGCTGGAGAAGCAAAAGCGCAAAGAAAGAGCTGTCACGCATCGAAAAGGCACTGAGGACCCTGGGCGACAACCAGAGTCTGCTGATGAATCTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCATTCCATCTGCAAACTACAGAAATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaatgactctggctatcctgcagtccagatgtataatcagttttaaact #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAA-AACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacttgctcttctcattctcccgtaggGAGGAGCAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATTTGGAACAACAAGTATGGCTCCCAGGCATCATTGACAA-TGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtacagtgttaggatctgtacccaaagtaccccagttacaagtgctttaa Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAA-AACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacttgctcttctcattctcccgtaggGAGGAGCAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATTTGGAACAACAAGTATGGCTCCCAGGCATCATTGACA-ATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtacagtgttaggatctgtacccaaagtaccccagttacaagtgctttaa Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacttgctcttctcattctcccgtagGGAGGAGCAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATTTGGAACAACAAGTATGGCTCCCAGGCATCATTGACAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtacagtgttaggatctgtacccaaagtaccccagttacaagtgctttaa Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAA-AACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacttgctcttctcattctcccgtagGGAGGAGCAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATTTGGAACAACAAGTATGGCTCCCAGGCATCATTGAC-AATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtacagtgttaggatctgtacccaaagtaccccagttacaagtgctttaa Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAA-AACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacttgctcttctcattctcccgtagGGAGGAGCAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATTTGGAACAACAAGTATGGCTCCCAGGCATCATTGAC-AATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtacagtgttaggatctgtacccaaagtaccccagttacaagtgctttaa Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacttgctcttctcattctcccgtagGGAGGAGCAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATTTGGAACAACAAGTATGGCTCCCAGGCATCATTGACAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtacagtgttaggatctgtacccaaagtaccccagttacaagtgctttaa Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacttgctcttctcattctcccgtagGGAGGAGCAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATTTGGAACAACAAGTATGGCTCCCAGGCATCATTGACAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtacagtgttaggatctgtacccaaagtaccccagttacaagtgctttaa Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacttgctcttctcattctcccgtagGGAGGAGCAAGAGAAGCTAAATATATGGGTAGCCCTGTTAAATTTGGAACAACAAGTATGGCTCCCAGGCATCATTGACAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtacagtgttaggatctgtacccaaagtaccccagttacaagtgctttaa #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc ctaatgcaagtaatgttctaagaaagggttttgccttttctttcgtgaagGAAGCCGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGGAAGAGGACGCTGTCTGTATCAAATATGGTTCCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACT-TGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAAcgtcagttcttttgctggcacctgatcccacccaatttgctacatatctag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc ctaatgcaagtaatgttctaagaaagggttttgccttttctttcgtgaagGAAGCCGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGGAAGAGGACGCTGTCTGTATCAAATATGGTTCCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCAC-TTGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAAcgtcagttcttttgctggcacctgatcccacccaatttgctacatatctag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGT-GCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcaagtaatgttctaagaaagggttttgccttttctttcgtgaagGAAGCCGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGGAAGAGGACGCTGTCTGTATCAAATATGGTtCCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTT-GTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtcagttcttttgctggcacctgatcccacccaatttgctacatatctag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTG-CCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcaagtaatgttctaagaaagggttttgccttttctttcgtgaagGAAGCCGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGGAAGAGGACGCTGTCTGTATCAAATATGGTTCCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCA-CTTGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtcagttcttttgctggcacctgatcccacccaatttgctacatatctag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGG-TGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCCAGTCACCGAGTG-----------CTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcaagtaatgttctaagaaagggttttgccttttctttcgtgaagGAAGCCGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGGAAGAGGACGCTGTCTGTATCAAATATGGTTCCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGC------TGGAGTGAGTCACTTGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtcagttcttttgctggcacctgatcccacccaatttgctacatatctag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGGGCC-----AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcaagtaatgttctaagaaagggttttgccttttctttcgtgaagGAAGCCGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGGAAGAGGACGCTGTCTGTATCAAATATGGTTCCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTTGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtcagttcttttgctggcacctgatcccacccaatttgctacatatctag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCC-TTTGTTTTGGGGAGGAGTCAGGCTGGGGCC-----AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcaagtaatgttctaagaaagggttttgccttttctttcgtgaagGAAGCCGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGGAAGAGGACGCTGTCTGTATCAAATATGGTTCCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTTGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtcagttcttttgctggcacctgatcccacccaatttgctacatatctag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCT---GGGGCCAGTCACCGA---GTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcaagtaatgttctaagaaagggttttgccttttctttcgtgaagGAAGCCGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGGAAGAGGACGCTGTCTGTATCAAATATGGTTCCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTTGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtcagttcttttgctggcacctgatcccacccaatttgctacatatctag #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGAC-GTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATCGTCTGGTCAGTCTACATTCACATGACCATCAAGC-TGGCAGCCATACAGCAGTCaggtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGAC-GTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATCGTCTGGTCAGTCTACATTCACATGACCATCAAG-CTGGCAGCCATACAGCAGTCaggtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATCGTCTGGTCAGTCTACATTCACATGACCATCAAGCTGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGA-CGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATCGTCTGGTCAGTCTACATTCACATGACCATCAAGC-TGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGA-CGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATCGTCTGGTCAGTCTACATTCACATGACCATCAAGC-TGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATCGTCTGGTCAGTCTACATTCACATGACCATCAAGCTGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATCGTCTGGTCAGTCTACATTCACATGACCATCAAGCTGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATCGTCTGGTCAGTCTACATTCACATGACCATCAAGCTGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAG-TACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAACTACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGA-GCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from CESAR GTCTTTTCTAAG-TACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAACTACCTCAGCTTTGTTGCTGTTGCACTAAGGC-TGAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Spaln_aa2Genome GTCTTTTCTAAG-TACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAAcTACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAG-CACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Spaln_nt2Genome GTCTTTTCTAAG-TACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAACTACCTCAGCTTTGTTGCTGTTGCACTAAGGCTG-AGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Pairagon GTCTTTTCTAAG-TACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAACTACCTCAGCTTTGTTGCTGTTGCACTAAGGCTG-AGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAACTACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggtgcaccactataacttgtcttccctttctccccagGTCTTCTCAAAACTACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc Alignment from GeneWise ------------------------------------------------------TTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG CAAACAAGCCATGGGTGCACCACTATAACTTGTCTTCCCTTTCTCCCCAGGTCTTCTCAAAACTACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAG-CACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtgagttaatagctacgagaaatcttccctttccacccctaaacattatc #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaagtaatgagcccatggtttctcccaactagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCACAATT-GCGGCATGGATCAAATGTGGGGTATACTATGTCTCCTTTGTTAATGgtgggcttagctgttgttataggctgaatgttattctcctacaaagtgac Alignment from CESAR GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaagtaatgagcccatggtttctcccaactagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCACAAT-TGCGGCATGGATCAAATGTGGGGTATACTATGTCTCCTTTGTTAATGgtgggcttagctgttgttataggctgaatgttattctcctacaaagtgac Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaagtaatgagcccatggtttctcccaactagATTCTTACAAAGTGGATGcTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCACAATTG-CGGCATGGATCAAATGTGGGGTATACTATGTCTCCTTTGTTAATGgtgggcttagctgttgttataggctgaatgttattctcctacaaagtgac Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaagtaatgagcccatggtttctcccaactagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCACAA-TTGCGGCATGGATCAAATGTGGGGTATACTATGTCTCCTTTGTTAATGgtgggcttagctgttgttataggctgaatgttattctcctacaaagtgac Alignment from Pairagon GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaagtaatgagcccatggtttctcccaactagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCACAATT-GCGGCATGGATCAAATGTGGGGTATACTATGTCTCCTTTGTTAATGgtgggcttagctgttgttataggctgaatgttattctcctacaaagtgac Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAAC--TGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaagtaatgagcccatggtttctcccaactagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCACAATTG---CGGCATGGATCAAATGTGGGGTATACTATGTCTCCTTTGTTAATGgtgggcttagctgttgttataggctgaatgttattctcctacaaagtgac Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATG-TACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAAC--TGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaagtaatgagcccatggtttctcccaactagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCACAATTG---CGGCATGGATCAAATGTGGGGTATACTATGTCTCCTTTGTTAATGgtgggcttagctgttgttataggctgaatgttattctcctacaaagtgac Alignment from GeneWise ----CTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaagtaatgagcccatggtttctcccaactagATTCTTACAAAGTGGATGCTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCACAATTG-CGGCATGGATCAAATGTGGGGTATACTATGTCTCCTTTGTTAATGgtgggcttagctgttgttataggctgaatgttattctcctacaaagtgac #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCT-GATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCACGATATTGTA---------------TTTACATACCCAGTGC-AGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCT-GATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCACGATATTGTATTT---------------ACATACCCAGTGC-AGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCACGATATTGTATTTACATA---------------CCCAGTGCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCT-GATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGA---TGTTAACTGCTTGCCACGATATTGTAT---------------TTACATACCCAGTG-CAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGA--------------CACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGATGTTAACTGCTTGCCAC----------------GATATTGTAT---------------TTACATACCCAGTG-CAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATC cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCACGATATTGTATTTACATACCCAGTGCAGCTAGTACCTACATTCGAAAGGTAGATCAGgtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Exonerate_coding2genome cgggcagcccgctctgggcctcctgctatcatggactactctttattcagtactttctaaagtgtgatgttaactgcttgccacgatattgtatttacatacccagtgcagctagtacctacattcgaaaggtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCACGATATTGTATTTACATA---------------CCCAGTGCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg #### Pga5_ID2972_6 --> 1 - 2 Original Alignment cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTAC-CATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag acatacactttgaactcttccagagattacctgcctttctctctgcatagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACT-GCAGTTAGCTGTGGATaggtggggcatgggtgcttcttgcccacaggccctatctcagcagcgtgcac Alignment from CESAR cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTAC-CATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag acatacactttgaactcttccagagattacctgcctttctctctgcatagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTAC-TGCAGTTAGCTGTGGATaggtggggcatgggtgcttcttgcccacaggccctatctcagcagcgtgcac Alignment from Spaln_aa2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTAC-CATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acatacactttgaactcttccagagattacctgcctttctctctgcatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACcCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTG-CAGTTAGCTGTGGATAGgtggggcatgggtgcttcttgcccacaggccctatctcagcagcgtgcac Alignment from Spaln_nt2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTAC-CATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acatacactttgaactcttccagagattacctgcctttctctctgcatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACT-GCAGTTAGCTGTGGATAGgtggggcatgggtgcttcttgcccacaggccctatctcagcagcgtgcac Alignment from Pairagon CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTA-CCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acatacactttgaactcttccagagattacctgcctttctctctgcatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACT-GCAGTTAGCTGTGGATAGgtggggcatgggtgcttcttgcccacaggccctatctcagcagcgtgcac Alignment from Exonerate_protein2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTAC-CATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTAC--TGGCAATTAGCTGTGGATAG acatacactttgaactcttccagagattacctgcctttctctctgcatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTG---CAGTTAGCTGTGGATAGgtggggcatgggtgcttcttgcccacaggccctatctcagcagcgtgcac Alignment from Exonerate_coding2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTAC-CATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTAC--TGGCAATTAGCTGTGGATAG acatacactttgaactcttccagagattacctgcctttctctctgcatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTG---CAGTTAGCTGTGGATAGgtggggcatgggtgcttcttgcccacaggccctatctcagcagcgtgcac Alignment from GeneWise CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTAC-TACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acatacactttgaactcttccagagattacctgcctttctctctgcatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCCATGGAGAACTTCACTGGGTACCTGTCTCAAAGCCCAGTTACTG-CAGTTAGCTGTGGATAGgtggggcatgggtgcttcttgcccacaggccctatctcagcagcgtgcac #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATT-GAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccaggTACACCTGCCCCTTCATTGAGAAGTTCTCGATTCGAAATAGAGACCTACTACTTGCCGGATGGGG-TCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTggtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTCTCCATT-GAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccaggTACACCTGCCCCTTCATTGAGAAGTTCTCGATTCGAAATAGAGACCTACTACTTGCCGGATG-GGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTggtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTCGAAATAGAGACCTACTACTTGCCGGATGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATT-GAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTCGAAATAGAGACCTACTACTTGCCGGAT-GGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATT-GAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTCGAAATAGAGACCTACTACTTGCCGGAT-GGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTCGAAATAGAGACCTACTACTTGCCGGATGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTCGAAATAGAGACCTACTACTTGCCGGATGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTCTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG tttaaaatacatgaccttgagacctgaatccagtttgtttgtgttcccagGTACACCTGCCCCTTCATTGAGAAGTTCTCGATTCGAAATAGAGACCTACTACTTGCCGGATGGGGTCAGCAACCTAATGTCCTCAAC---AGCGGGGCTGAGAGAAGACAGCGAATTGTTGgtaagcccttccaggtcactatgtctcagcacgatgtgaaccgaggtctt #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTC-CTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagtCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAG-CACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTC-CTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagtCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAG-CACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCT-CCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAG-CACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGC-TCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGC-ACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCC-CACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTG-CTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTG-CCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTG-CTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTG-CCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGcCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGC-TTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCC-CACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTG-CTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTG-CCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTG-CTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTG-CCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCC---TTCATTCTGCG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTG-CCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCC---TTCATTCTGCG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACG-CTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGC-TTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAAT-GGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATCGGCCATTTCATGTATGGACCATTGGATGTAG-TACACTCACCGGAGAAGAGgtatcctttttttacgatgcaccagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAAT-GGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATCGGCCATTTCATGTATGGACCATTGGATGTAG-TACACTCACCGGAGAAGAGgtctgactattgtgttttgttctagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATCGGCCATTTCATGTATGGACCATTGGATGTAGTACACTCACCGGAGAAGAGGTATCCTTTTTTTACGATGCACCAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTT-CATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-------------------GA------AGGTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATCGGCCATTTCATGTATGGACCATTGGATGTAGT-ACACTCACCGGAGAAGAGGTATCCTTTTTTTACGATGCACCAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAAT-GGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATCGGCCATTTCATGTATGGACCATTGGATGTAGT-ACACTCACCGGAGAAGAGGTATCCTTTTTTTACGATGCACCAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAAT-GGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGATGTCTACGTCATGACACAG caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATCGGCCATTTCATGTATGGACCATTGGATGTAGTACACTCACCGGAGAAGAGGTATCCTTTTTTTACGATGCACCAGgttgatgtctatgtcatgacacagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAAT-GGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGATGTCTACGTCATGACACAG caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATCGGCCATTTCATGTATGGACCATTGGATGTAGTACACTCACCGGAGAAGAGGTATCCTTTTTTTACGATGCACCAGgttgatgtctatgtcatgacacagc Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAAT-GGGCGCTTCATGTATGGACCATTGGATGTGGTC------------------------ACGCTCACTGGAGAGAAGGTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCAGGTGCTCAATCGGCCATTTCATGTATGGACCATTGGATGTAGTACACTCACCGGAGAAGAGGTATCCTTTTTTTACGATGCACCAGGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATC-GATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCCGATGGTTCTTTCACTGCGAGTGTCTCAATCA-GGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATC-GATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCCGATGGTTCTTTCACTGCGAGTGTCTCAATC-AGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCCGATGGTTCTTTCACTGCGAGTGTCTCAATCAGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATC-GATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCCGATGGTTCTTTCACTGCGAGTGTCTCAATCAG-GGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCAT-CGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCCGATGGTTCTTTCACTGCGAGTGTCTCAATCA-GGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Exonerate_protein2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCCGATGGTTCTTTCACTGCGAGTGTCTCAATCAGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Exonerate_coding2genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCCGATGGTTCTTTCACTGCGAGTGTCTCAATCAGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from GeneWise ------------------------------------------------AGGGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG GCTCCTGTGAAACACCAACTTACTCTGTCTGAAATTGTTTCCAACTGTAGGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCCGATGGTTCTTTCACTGCGAGTGTCTCAATCAGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTA-GTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccaggCACTGGCAGGACTCTGACTACTTGATTGTATATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTCGTGGCCTGGTTGTCACAACATACTTTCC-TCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTA-GTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccaggCACTGGCAGGACTCTGACTACTTGATTGTATATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTCGTGGCCTGGTTGTCACAACATACTT-TCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTCGTGGCCTGGTTGTCACAACATACTTTCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTA-GTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTCGTGGCCTGGTTGTCACAACA-TACTTTCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTG-TAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTCGTGGCCTGGTTGTCACAACAT-ACTTTCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Exonerate_protein2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTCGTGGCCTGGTTGTCACAACATACTTTCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Exonerate_coding2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTCGTGGCCTGGTTGTCACAACATACTTTCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCAACTGGTCGGCCAGATATGCAAAAACACCGTGTTCGTGGCCTGGTTGTCACAACATACTTTCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTC-TCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCCTCTCCAAGTCATACCTATATTATTGGCCGTGGCA-CCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTC-TCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCCTCTCCAAGTCATACCTATATTATTGGCCGTGGC-ACCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAA---CTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTC---CTCTCCAAGTCATACCTATATTATTGGCCGTGGCACCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTC-TCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCCTCTCCAAGTCATACCTATATTATTGGCCGTG-GCACCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCT-CTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGC-----AAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCCTCTCCAAGTCATACCTATATTATTGGCCGTG------GCACCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Exonerate_protein2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCCTCTCCAAGTCATACCTATATTATTGGCCGTGGCACCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Exonerate_coding2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCCTCTCCAAGTCATACCTATATTATTGGCCGTGGCACCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCCTCTCCAAGTCATACCTATATTATTGGCCGTGGCACCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa #### Pkd2l1_ID8954_14 --> 1 - 0 Original Alignment gCTCACAAGGAGAGTT-CTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatcaagacagcaatcttggtttccttggatctctttgttgtttttgaaggCTTACAAGGAGAGTACTTGCAGCTACAATGTATTTTGGAAGGAG-TGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGTTGGCTCCCTACCCAGGCATGgtaagtgctctctggtggcacacagagtcagctactactggccatcatat Alignment from CESAR gCTCACAAGGAGAGTT-CTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatcaagacagcaatcttggtttccttggatctctttgttgtttttgaaggCTTACAAGGAGAGTACTTGCAGCTACAATGTATTTTGGAAGGAG-TGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGTTGGCTCCCTACCCAGGCATGgtaagtgctctctggtggcacacagagtcagctactactggccatcatat Alignment from Spaln_aa2Genome GCTCACAAGGAGAGTT-CTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatcaagacagcaatcttggtttccttggatctctttgttgtttttgaagGCTTACAAGGAGAGTAcTTGCAGCTACAATGTATTTTGGAAGGAGT-GTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGTTGGCTCCCTACCCAGGCATGgtaagtgctctctggtggcacacagagtcagctactactggccatcatat Alignment from Spaln_nt2Genome GCTCACAAGGAGAGTTCT-GCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatcaagacagcaatcttggtttccttggatctctttgttgtttttgaagGCTTACAAGGAGAGTACTTGCAGCTACAATGTATTTTGGAAGGAG-TGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGTTGGCTCCCTACCCAGGCATGgtaagtgctctctggtggcacacagagtcagctactactggccatcatat Alignment from Pairagon GCTCACAAGGAGAGTTC-TGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatcaagacagcaatcttggtttccttggatctctttgttgtttttgaagGCTTACAAGGAGAGTACTTGCAGCTACAATGTATTTTGGAAGGAG-TGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGTTGGCTCCCTACCCAGGCATGgtaagtgctctctggtggcacacagagtcagctactactggccatcatat Alignment from Exonerate_protein2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatcaagacagcaatcttggtttccttggatctctttgttgtttttgaagGCTTACAAGGAGAGTACTTGCAGCTACAATGTATTTTGGAAGGAGTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGTTGGCTCCCTACCCAGGCATGgtaagtgctctctggtggcacacagagtcagctactactggccatcatat Alignment from Exonerate_coding2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatcaagacagcaatcttggtttccttggatctctttgttgtttttgaagGCTTACAAGGAGAGTACTTGCAGCTACAATGTATTTTGGAAGGAGTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGTTGGCTCCCTACCCAGGCATGgtaagtgctctctggtggcacacagagtcagctactactggccatcatat Alignment from GeneWise GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatcaagacagcaatcttggtttccttggatctctttgttgtttttgaagGCTTACAAGGAGAGTACTTGCAGCTACAATGTATTTTGGAAGGAGTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGTTGGCTCCCTACCCAGGCATGgtaagtgctctctggtggcacacagagtcagctactactggccatcatat #### Pkd2l1_ID8958_10 --> 0 - 0 Original Alignment AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAG-GAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGCGAGGAGCTGGCTGGCCAGAAGGATCAGCTGC-GCTTTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from CESAR AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAG-GAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGCGAGGAGCTGGCTGGCCAGAAGGATCAGCTG-CGCTTTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Spaln_aa2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGCGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCGCTTTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Spaln_nt2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAG-GAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGCGAGGAGCTGGCTGGCCAGAAGGATCAGCTGC-GCTTTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Pairagon AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAG-GAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGCGAGGAGCTGGCTGGCCAGAAGGATCAGCTGC-GCTTTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Exonerate_protein2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGCGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCGCTTTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Exonerate_coding2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGCGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCGCTTTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from GeneWise AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGCGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCGCTTTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTG-GGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacacagcgtgcttgctgggcgctctgcttcctaagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGCGGCCCTGTGTACTTTGTCACCTATGTCTTCT-CGTCTTCTTCGTGCTCCTGgtaagggtgacttagagaactggtggtttggaagccctttgaagtgtcct Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTG-GGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacacagcgtgcttgctgggcgctctgcttcctaagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGCGGCCCTGTGTACTTTGTCACCTATGTCT-TCTCGTCTTCTTCGTGCTCCTGgtaagggtgacttagagaactggtggtttggaagccctttgaagtgtcct Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCT-GTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacacagcgtgcttgctgggcgctctgcttcctaagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGCGGCCCtGTGTACTTTGTCACCTATGTCTTCTC-GTCTTCTTCGTGCTCCTGgtaagggtgacttagagaactggtggtttggaagccctttgaagtgtcct Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTG-GGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacacagcgtgcttgctgggcgctctgcttcctaagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGCGGCCCTGTGTACTTTGTCACCTATGTCTTCT-CGTCTTCTTCGTGCTCCTGgtaagggtgacttagagaactggtggtttggaagccctttgaagtgtcct Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTG-GGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacacagcgtgcttgctgggcgctctgcttcctaagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGCGGCCCTGTGTACTTTGTCACCTATGTCTTC-TCGTCTTCTTCGTGCTCCTGgtaagggtgacttagagaactggtggtttggaagccctttgaagtgtcct Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacacagcgtgcttgctgggcgctctgcttcctaagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGCGGCCCTGTGTACTTTGTCACCTATGTCTTCTCGTCTTCTTCGTGCTCCTGgtaagggtgacttagagaactggtggtttggaagccctttgaagtgtcct Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacacagcgtgcttgctgggcgctctgcttcctaagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGCGGCCCTGTGTACTTTGTCACCTATGTCTTCTCGTCTTCTTCGTGCTCCTGgtaagggtgacttagagaactggtggtttggaagccctttgaagtgtcct Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacacagcgtgcttgctgggcgctctgcttcctaagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGCGGCCCTGTGTACTTTGTCACCTATGTCTTCTCGTCTTCTTCGTGCTCCTGgtaagggtgacttagagaactggtggtttggaagccctttgaagtgtcct #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGAC-ATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCT-CTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCatgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGAC-ATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACCATCCTGGGCTTTGCCATCATGTTCTTCATTG-TCTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCatgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGA-CATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACCATCCTGGGCTTTGCCATCATGTTCTTCATTGTC-TCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGA-CATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACCATCCTGGGCTTTGCCATCATGTTCTTCATTGTC-TCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGA---CATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAG--GACCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTC-TTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ctaccccttgagagcttaccccttgactcattgttcttttattttgacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACCATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAAACTTTAGCACTTTTGTTAAGTGCATgtacctatagctgtagcattgtagatcactcaattttcagatcccagcat #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAA-CGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACCGGCTAGTGGCAGGACAACAGCAAGTCC-CCAGCAATTAGAGGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAA-CGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACCGGCTAGTGGCAGGACAACAGCAAGTC-CCCAGCAATTAGAGGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACCGGCTAGTGGCAGGACAACAGCAAGTCCCCAGCAATTAGAGGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAAC-GCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACCGGCTAGTGGCAGGACAACAGCAAGTCC-CCAGCAATTAGAGGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAA-CGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACCGGCTAGTGGCAGGACAACAGCAAGTCC-CCAGCAATTAGAGGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACCGGCTAGTGGCAGGACAACAGCAAGTCCCCAGCAATTAGAGGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Exonerate_coding2genome tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagttgggggaggcccaaaaacagcagcatgaaccggctagtggcaggacaacagcaagtccccagcaattagaggaagagaaacccaaggtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACCGGCTAGTGGCAGGACAACAGCAAGTCCCCAGCAATTAGAGGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GACAG GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag GACAGgtatgagatcggtggggggcggtttttattgtcctttcttcacagGCGCATCAGTGGGTCAAGGAGCGTTGTCCTGGATACACACACAACCCAATTCAAGAGGC-AAGGGAACTGAAAGAAaggtgggtacaagtagaaaatcagtatgaccccctttacccaatctctgatt Alignment from CESAR GACAG GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag GACAGgtaaccgatcggtggggggcggtttttattgtcctttcttcacagGCGCATCAGTGGGTCAAGGAGCGTTGTCCTGGATACACACACAACCCAATTCAAGAGG-CAAGGGAACTGAAAGAAaggtgggtacaagtagaaaatcagtatgaccccctttacccaatctctgagt Alignment from Spaln_aa2Genome GACAG GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtatgagatcggtggggggcggtttttattgtcctttcttcacagGCGCATCAGTGGGTCAAGGAGcGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCA-AGGGAACTGAAAGAAAGgtgggtacaagtagaaaatcagtatgaccccctttacccaatctctgatt Alignment from Spaln_nt2Genome GACAG GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtatgagatcggtggggggcggtttttattgtcctttcttcacagGCGCATCAGTGGGTCAAGGAGCGTTGTCCTGGATACACACACAACCCAATTCAAGAGGC-AAGGGAACTGAAAGAAAGgtgggtacaagtagaaaatcagtatgaccccctttacccaatctctgatt Alignment from Pairagon GACAG GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtatgagatcggtggggggcggtttttattgtcctttcttcacagGCGCATCAGTGGGTCAAGGAGCGTTGTCCTGGATACACACACAACCCAATTCAAGAGGC-AAGGGAACTGAAAGAAAGgtgggtacaagtagaaaatcagtatgaccccctttacccaatctctgatt Alignment from Exonerate_protein2genome GACAG GCTCATCAGCGGCTCAAGGAG-GTTGTCCTGGATACACACACAACACAGTTCAAGAGG--CTGAAGGAGCTGAATGAAAG GACAGgtatgagatcggtggggggcggtttttattgtcctttcttcacagGCGCATCAGTGGGTCAAGGAGCGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCA---AGGGAACTGAAAGAAAGgtgggtacaagtagaaaatcagtatgaccccctttacccaatctctgatt Alignment from Exonerate_coding2genome GACAG GCTCATCAGCGGCTCAAGGAGGT---TGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG GACAGgtatgagatcggtggggggcggtttttattgtcctttcttcacagGCGCATCAGTGGGTCAAGGAG--CGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCA-AGGGAACTGAAAGAAAGgtgggtacaagtagaaaatcagtatgaccccctttacccaatctctgatt Alignment from GeneWise GACAG GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACA GACAGgtatgagatcggtggggggcggtttttattgtcctttcttcacaggcgcatcagtgggtcaaggagcgttgtcctggatacacacacaacccaattcaagaggcaagggaactgaaagaaaggtgggtacaagtagAAA---------------------ATCAGTATGACC #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggcatccctcaacagccacaccaattggtgtgttcctcttgtgttgacagaaGTAATCCCCACACCTCTAGAAGAGCCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCC-ACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTATAGCCCTCACACGCCGTTTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTCCCAGTGTCctgtaagcgtacttcactgtgctgtaacttggcagtgtgtacttactggcat Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggcatccctcaacagccacaccaattggtgtgttcctcttgtgttgacagaaGTAATCCCCACACCTCTAGAAGAGCCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGC-CACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTATAGCCCTCACACGCCGTTTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTCCCAGTGTCctgtaagcgtacttcactgtgctgtaacttggcagtgtgtacttactggcat Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatccctcaacagccacaccaattggtgtgttcctcttgtgttgacagAAGTAATCCCCACACCTCTAGAAGAGCCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTATAGCCCTCACACGCCGTTTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTCCCAGTGTCCTgtaagcgtacttcactgtgctgtaacttggcagtgtgtacttactggcat Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGC-TCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatccctcaacagccacaccaattggtgtgttcctcttgtgttgacagAAGTAATCCCCACACCTCTAGAAGAGCCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCC-ACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTATAGCCCTCACACGCCGTTTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTCCCAGTGTCCTgtaagcgtacttcactgtgctgtaacttggcagtgtgtacttactggcat Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatccctcaacagccacaccaattggtgtgttcctcttgtgttgacagAAGTAATCCCCACACCTCTAGAAGAGCCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCC-ACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTATAGCCCTCACACGCCGTTTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTCCCAGTGTCCTgtaagcgtacttcactgtgctgtaacttggcagtgtgtacttactggcat Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatccctcaacagccacaccaattggtgtgttcctcttgtgttgacagAAGTAATCCCCACACCTCTAGAAGAGCCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTATAGCCCTCACACGCCGTTTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTCCCAGTGTCCTgtaagcgtacttcactgtgctgtaacttggcagtgtgtacttactggcat Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatccctcaacagccacaccaattggtgtgttcctcttgtgttgacagAAGTAATCCCCACACCTCTAGAAGAGCCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTATAGCCCTCACACGCCGTTTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTCCCAGTGTCCTgtaagcgtacttcactgtgctgtaacttggcagtgtgtacttactggcat Alignment from GeneWise -------------TTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcatccctcaacagCCACACCAATTGGTGTGTTCCTCTTGTGTTGACAGAAGTAATCCCCACACCTCTAGAAGAGCCTCAGAAGTCACAAGGCCATGGTGAAACTTCGCAGCCACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTATAGCCCTCACACGCCGTTTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCTCCCAGTGTCCTgtaagcgtacttcactgtgctgtaacttggcagtgtgtacttactggcat #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATAT-CGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCCGTACCCGGACATCTCAGGGAAACTCATTCAACC-TGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATAT-CGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCCGTACCCGGACATCTCAGGGAAACTCATTCA-ACCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCCGTACCCGGACATCTCAGGGAAACTCATTCAACCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATAT-CGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCCGTACCCGGACATCTCAGGGAAACTCATTCAACC-TGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATAT-CGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCCGTACCCGGACATCTCAGGGAAACTCATTCAA-CCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCCGTACCCGGACATCTCAGGGAAACTCATTCAACCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCCGTACCCGGACATCTCAGGGAAACTCATTCAACCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCCGTACCCGGACATCTCAGGGAAACTCATTCAACCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTG-GACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg cctcctggctgctggaacctcaggagaattactctgtggttgttctgcagaTACAACAGACAACAGCTCAGCCAGATTTACACCAGGAGCAAACAGGTGCGACTCTTCAAACTACATGCCTTACCTCTTTTGGA-TGTGGGCTGCCAACTTGTTGCCCTCAATTTCCAGAGTCTGggtaaggaagcactggccctggcttaggagtttgtgcaagtagagtaattt Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTG-GACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg cctcctggctgctggaacctcaggagaattactctgtggttgttctgcagaTACAACAGACAACAGCTCAGCCAGATTTACACCAGGAGCAAACAGGTGCGACTCTTCAAACTACATGCCTTACCTCTTTT-GGATGTGGGCTGCCAACTTGTTGCCCTCAATTTCCAGAGTCTGggtaaggaagcactggccctggcttaggagtttgtgcaagtagagtaattt Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaacctcaggagaattactctgtggttgttctgcagATACAACAGACAACAGCTCAGCCAGATTTACACCAGGAGCAAACAGGTGCGACTCTTCAAACTACATGCCTTACCTCTTTTGGATGTGGGCTGCCAACTTGTTGCCCTCAATTTCCAGAGTCTGGgtaaggaagcactggccctggcttaggagtttgtgcaagtagagtaattt Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTG-GACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaacctcaggagaattactctgtggttgttctgcagATACAACAGACAACAGCTCAGCCAGATTTACACCAGGAGCAAACAGGTGCGACTCTTCAAACTACATGCCTTACCTCTTTTGG-ATGTGGGCTGCCAACTTGTTGCCCTCAATTTCCAGAGTCTGGgtaaggaagcactggccctggcttaggagtttgtgcaagtagagtaattt Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTG-GACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaacctcaggagaattactctgtggttgttctgcagATACAACAGACAACAGCTCAGCCAGATTTACACCAGGAGCAAACAGGTGCGACTCTTCAAACTACATGCCTTACCTCTTTTGG-ATGTGGGCTGCCAACTTGTTGCCCTCAATTTCCAGAGTCTGGgtaaggaagcactggccctggcttaggagtttgtgcaagtagagtaattt Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTAC-CCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGG--AACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaacctcaggagaattactctgtggttgttctgcagATACAACAGACAACAGCTCAGCCAGATTTACACCAGGAGCAAACAGGTGCGACTCTTCAAACTACATGCCTTACCTCTTTTGGAT---GTGGGCTGCCAACTTGTTGCCCTCAATTTCCAGAGTCTGGgtaaggaagcactggccctggcttaggagtttgtgcaagtagagtaattt Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTAC-CCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGG--AACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaacctcaggagaattactctgtggttgttctgcagATACAACAGACAACAGCTCAGCCAGATTTACACCAGGAGCAAACAGGTGCGACTCTTCAAACTACATGCCTTACCTCTTTTGGAT---GTGGGCTGCCAACTTGTTGCCCTCAATTTCCAGAGTCTGGgtaaggaagcactggccctggcttaggagtttgtgcaagtagagtaattt Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaacctcaggagaattactctgtggttgttctgcagATACAACAGACAACAGCTCAGCCAGATTTACACCAGGAGCAAACAGGTGCGACTCTTCAAACTACATGCCTTACCTCTTTTGGATGTGGGCTGCCAACTTGTTGCCCTCAATTTCCAGAGTCTGGgtaaggaagcactggccctggcttaggagtttgtgcaagtagagtaattt #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagaGCAAAGCAGCAC---AAGATGGCTGAGCTACTGCCGGTCTATCTTTGGGGATGCGC-ACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagaGCAAAGCAGCAC---AAGATGGCTGAGCTACTGCCGGTCTATCTTTGGGGATGCG-CACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGGCTGAGcTACTGCCGGTCTATCTTTGGGGATGCGCA-CTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCA---CAAGATGGCTGAGCTACTGCCGGTCTATCTTTGGGGATGCGC-ACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAG-TACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCA---CAAGATGGCTGAGCTACTGCCGGTCTATCTTTGGGGATGCGC-ACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGGCTGAGCTACTGCCGGTCTATCTTTGGGGATGCGCACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCACAAGATGGCTGAG--CTACTGCCGGTCTATCTTTGGGGATGCGCA-CTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGGCTGAGCTACTGCCGGTCTATCTTTGGGGATGCGCACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct #### Plce1_ID7626_12 --> 1 - 1 Original Alignment cATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCT-GTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAg gttgtatatttttattcataaaggctactctctactttgctttccaaaagcATTAGGAGCCGAAAGGACCTGAAGGACATCTTCGACATCTACACTCGTG---------AGATCTACCTCGGAGTCCACCCCCC-CTATACCAACTGGACAATTGAGGAAAATACCAGTGAGCTTCAGCCAGACCTGggtatgtttgttggcccactgctgcccatgaagcaggaaagtaattttgat Alignment from CESAR cATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCT-GTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAg gttgtatatttttattcataaaggctactctctactttgctttccaaaagcATTAGGAGCCGAAAGGACCTGAAGGACATCTTCGACATCTACACTCGTG---------AGATCTACCTCGGAGTCCACCCCC-CCTATACCAACTGGACAATTGAGGAAAATACCAGTGAGCTTCAGCCAGACCTGggtatgtttgttggcccactgctgcccatgaagcaggaaagtaattttgat Alignment from Spaln_aa2Genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG gttgtatatttttattcataaaggctactctctactttgctttccaaaagCATTAGGAGCCGAAAGGACCTGAAGGACATCTTCGACATCTACACT---------CGTGAGATCTACCTCGGAGTCCACCCCCCCTATACCAACTGGACAATTGAGGAAAATACCAGTGAGCTTCAGCCAGACCTGGgtatgtttgttggcccactgctgcccatgaagcaggaaagtaattttgat Alignment from Spaln_nt2Genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG gttgtatatttttattcataaaggctactctctactttgctttccaaaagCATTAGGAGCCGAAAGGACCTGAAGGACATCTTCGACATCTACACT----CGTG----AGATCTACCTCGGAGTCCACCCC-CCCTATACCAACTGGACAATTGAGGAAAATACCAGTGAGCTTCAGCCAGACCTGGgtatgtttgttggcccactgctgcccatgaagcaggaaagtaattttgat Alignment from Pairagon CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATC----GGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG gttgtatatttttattcataaaggctactctctactttgctttccaaaagCATTAGGAGCCGAAAGGACCTGAAGGACATCTTCGACATCTA------------CACTCGTGAGATCTACCTCGGAGTCCACCCC-CCCTATACCAACTGGACAATTGAGGAAAATACCAGTGAGCTTCAGCCAGACCTGGgtatgtttgttggcccactgctgcccatgaagcaggaaagtaattttgat Alignment from Exonerate_protein2genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG gttgtatatttttattcataaaggctactctctactttgctttccaaaagCATTAGGAGCCGAAAGGACCTGAAGGACATCTTCGACATCTACACTCGTGAGATCTACCTCGGAGTCCAC---------CCCCCCTATACCAACTGGACAATTGAGGAAAATACCAGTGAGCTTCAGCCAGACCTGGgtatgtttgttggcccactgctgcccatgaagcaggaaagtaattttgat Alignment from Exonerate_coding2genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG gttgtatatttttattcataaaggctactctctactttgctttccaaaagCATTAGGAGCCGAAAGGACCTGAAGGACATCTTCGACATCTACACTCGTGAGATCTACCTCGGAGTCCAC---------CCCCCCTATACCAACTGGACAATTGAGGAAAATACCAGTGAGCTTCAGCCAGACCTGGgtatgtttgttggcccactgctgcccatgaagcaggaaagtaattttgat Alignment from GeneWise CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG gttgtatatttttattcataaaggctactctctactttgctttccaaaagCATTAGGAGCCGAAAGGACCTGAAGGACATCTTCGACATCTACACTCGTGAGATCTACCTCGGAGTCCAC---------CCCCCCTATACCAACTGGACAATTGAGGAAAATACCAGTGAGCTTCAGCCAGACCTGGgtatgtttgttggcccactgctgcccatgaagcaggaaagtaattttgat #### Plekhs1_ID12098_3 --> 0 - 2 Original Alignment ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGA-ACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg cattggctttactgactttaactagtgccctggggctctgtgttccttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGACTCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAGC-CAGAGGCTCCATTGGAATTGACaggtgggagtttgaggtgggctgtatactccctgtttattgtgtgccctact Alignment from CESAR ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGA-ACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg cattggctttactgactttaactagtgccctggggctctgtgttccttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGACTCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAG-CCAGAGGCTCCATTGGAATTGACaggtgggagtttgaggtgggctgtatactccctgtttattgtgtgccctact Alignment from Spaln_aa2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgactttaactagtgccctggggctctgtgttccttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGACTCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAGCCAGAGGCTCCATTGGAATTGACAGgtgggagtttgaggtgggctgtatactccctgtttattgtgtgccctact Alignment from Spaln_nt2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAA-CGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgactttaactagtgccctggggctctgtgttccttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGACTCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAGC-CAGAGGCTCCATTGGAATTGACAGgtgggagtttgaggtgggctgtatactccctgtttattgtgtgccctact Alignment from Pairagon ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAA-CGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgactttaactagtgccctggggctctgtgttccttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGACTCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAGC-CAGAGGCTCCATTGGAATTGACAGgtgggagtttgaggtgggctgtatactccctgtttattgtgtgccctact Alignment from Exonerate_protein2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGA-ACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACG cattggctttactgactttaactagtgccctggggctctgtgttccttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGACTCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAGCCAGAGGCTCCATTGGAATTGACAGgtgggagtttgaggtgggctgtatactccctgtttattgtgtgccctact Alignment from Exonerate_coding2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGA-ACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACG cattggctttactgactttaactagtgccctggggctctgtgttccttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGACTCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAGCCAGAGGCTCCATTGGAATTGACAGgtgggagtttgaggtgggctgtatactccctgtttattgtgtgccctact Alignment from GeneWise ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGA-ACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGGCAGCTCCACT-- cattggctttactgactttaactagtgccctggggctctgtgttccttagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGACTCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAGCCAGAGGCTCCATTGGAATTGACAGGTGGGAGTTTGAGgtgggctgtatactccctgtttattgtgtgccctact #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACT-GTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcaggtTGGTGGTACCAGATAACTCGTCACCCTCTCAGGACAGAAGGTGACTGGGC-TATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtgggcaataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from CESAR gtTGGCGGTACCAGGTGACT-GTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcaggtTGGTGGTACCAGATAACTCGTCACCCTCTCAGGACAGAAGGTGACTGGG-CTATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtgggcaataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACT-GTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTGCAGCCAGGTACTTC agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTcGTCACCCTCTCAGGACAGAAGGTGACTGGGCT-ATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTGGGCAATAGGAAACATCACACAgccctttagatttctaagtgtgtcat Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACT-GTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTCGTCACCCTCTCAGGACAGAAGGTGACTGGGC-TATCCTAGT---GTTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtgggcaataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from Pairagon GTTGGCGGTACCAGGTGACT-GTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTCGTCACCCTCTCAGGACAGAAGGTGACTGGGC-TATCCTAGT---GTTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtgggcaataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTGCAGCCAGGTACTTCTCACGT agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTCGTCACCCTCTCAGGACAGAAGGTGACTGGGCTATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTGGGCAATAGGAAACATCACACAGCCCTTtagatttctaagtgtgtcat Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTGCAGCCAGGTACTTCTCACGT agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTCGTCACCCTCTCAGGACAGAAGGTGACTGGGCTATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTGGGCAATAGGAAACATCACACAGCCCTTtagatttctaagtgtgtcat Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTG------------CAGCCAGGTACTTCTCACGTC-- agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTCGTCACCCTCTCAGGACAGAAGGTGACTGGGCTATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTGGGCAATAGGAAACATCACACAGCCCTTTAGATTTCTAAGTGTgtcat #### Pola2_ID1325_15 --> 0 - 2 Original Alignment CGAGTGCAGTTTGTGTCAGAGCCC-TGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTCTGCAGCCTATCCATAAATGGAGTAATG---TATTCAACTA-TGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCaggtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from CESAR CGAGTGCAGTTTGTGTCAGAGCCC-TGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTCTGCAGCCTATCCATAAATGGAGTAATGTAT---TCAACT-ATGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCaggtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Spaln_aa2Genome CGAGTGCAGTTTGTGTCAGAGCCC-TGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTcTGCAGCCTATCCATAAATGGAGTAATGTATTC----AACTATGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Spaln_nt2Genome CGAGTGCAGTTTGTGTCAGAGCC-CTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTCTGCAGCCTATCCATAAATGGAGTAATGT----ATTCAACTATGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Pairagon CGAGTGCAGTTTGTGTCAGAGCC-CTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCA------CGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTCTGCAGCCTATCCATAAATGGAGTAATGT----------ATTCAACTATGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Exonerate_protein2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTCTGCAG---CCTATCCATAAATGGAGTAATGTATTCAACTATGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Exonerate_coding2genome CGAGTGCAGTTTGTGTCAGAGCCCTG---CAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCT--CTGCAGCCTATCCATAAATGGAGTAATGTATTC----AACTATGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from GeneWise CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTCTGCAG---CCTATCCATAAATGGAGTAATGTATTCAACTATGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGG-AGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcttgtcccgtttgtttgttttctgataaaggtATCTCAAGGTTGTTGCAGCGC---CAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGG-GTATCCTGTGTTGAAAGCACACCCTGAAGACCCTCACTACCGGTGTacgtgtgtacagccccagagagctttctactgcctatctgggagctcacctg Alignment from CESAR gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcttgtcccgtttgtttgttttctgataaaggtATCTCAAGGTTGTTGCAGCGC--CAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAG-GGTATCCTGTGTTGAAAGCACACCCTGAAGACCCTCACTACCGGTGTacgtgtgtacagccccagagagctttctactgcctatctgggagctcacctg Alignment from Spaln_aa2Genome GCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcccgtttgtttgttttctgataaaggtatctcaaggttgttgcagCGCC------AGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGG-TATCCTGTGTTGAAAGCACACCCTGAAGACCCTCACTACCGGTGTACgtgtgtacagccccagagagctttctactgcctatctgggagctcacctg Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGC-GCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcccgtttgtttgttttctgataaagGTATCTCAAGGTTGTTGCAGCGCCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGG-GTATCCTGTGTTGAAAGCACACCCTGAAGACCCTCACTACCGGTGTACgtgtgtacagccccagagagctttctactgcctatctgggagctcacctg Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcccgtttgtttgttttctgataaagGTATCTCAAGGTTGTTGCAGCGCC--AGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGG-GTATCCTGTGTTGAAAGCACACCCTGAAGACCCTCACTACCGGTGTACgtgtgtacagccccagagagctttctactgcctatctgggagctcacctg Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcccgtttgtttgttttctgataaagGTATCTCAAGGTTGTTGCAGCGCCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGGTATCCTGTGTTGAAAGCACACCCTGAAGACCCTCACTACCGGTGTACgtgtgtacagccccagagagctttctactgcctatctgggagctcacctg Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC catgccactaccaccccctgcttgtcccgtttgtttgttttctgataaagGTATCTCAAGGTTGTTGCAGCGCCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGGTATCCTGTGTTGAAAGCACACCCTGAAGACCCTCACTACCGGTGTACGtgtgtacagccccagagagctttctactgcctatctgggagctcacctg Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGCCTGTGGCATCTCTACCCACTC catgccactaccaccccctgcttgtcccgtttgtttgttttctgataaagGTATCTCAAGGTTGTTGCAGCGCCAGCCGCGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGGTATCCTGTGTTGAAAGCACACCCTGAAGACCCTCACTACCGGTGTACGTGT------GTACAGCCCCAGagagctttctactgcctatctgggagct #### Polr2g_ID2377_6 --> 0 - 0 Original Alignment GACATTGTGATTCAGCAG----GACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT tctgataagaagcctgagctggctgacctgccgaccctctttgattacagGGCATATTGATTCAGCTGGATCGAG------ATACGGCTAAAGATTGTAGGAACAC-TGTAGATAAAAATGATGTTgtaaatcgagctaggcttttgttctttgtttatatgacatcacagatcca Alignment from CESAR GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT tctgataagaagcctgagctggctgacctgccgaccctctttgattacagGGCATATTGATTCAGCTGGAT--CGAGATACGGCTAAAGATTGTAGGAACA-CTGTAGATAAAAATGATGTTgtaaatcgagctaggcttttgttctttgtttatatgacatcacagatcca Alignment from Spaln_aa2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT tctgataagaagcctgagctggctgacctgccgaccctctttgattacagGGCATATTGATTCAGCTGGATCGAGATACGGCT---AAAGATTGTAGGAACACTGTAGATAAAAATGATGTTgtaaatcgagctaggcttttgttctttgtttatatgacatcacagatcca Alignment from Spaln_nt2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT tctgataagaagcctgagctggctgacctgccgaccctctttgattacagGGCATATTGATTCAGCTGGA--TCGAGATACGGCTAAAGATTGTAGGAACAC-TGTAGATAAAAATGATGTTgtaaatcgagctaggcttttgttctttgtttatatgacatcacagatcca Alignment from Pairagon GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT tctgataagaagcctgagctggctgacctgccgaccctctttgattacagGGCATATTGATTCAGCTGGAT--CGAGATACGGCTAAAGATTGTAGGAACAC-TGTAGATAAAAATGATGTTgtaaatcgagctaggcttttgttctttgtttatatgacatcacagatcca Alignment from Exonerate_protein2genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT tctgataagaagcctgagctggctgacctgccgaccctctttgattacagGGCATATTGATTCAGCTGGATCGAGAT---ACGGCTAAAGATTGTAGGAACACTGTAGATAAAAATGATGTTgtaaatcgagctaggcttttgttctttgtttatatgacatcacagatcca Alignment from Exonerate_coding2genome tctgataagaagcctgagctggctgacctgccgaccctctttgattacagggcatattgattcagctggatcgagatacggctaaagattgtaggaacactgtagataaaaatgatgttgtaaatcgagctaggcttttgttctttgtttatatgacatcacagatcca Alignment from GeneWise GTAGACAAGAATGACATTTTTGCCATTGGCTCTCTGATGGACGACTAC TCTGATAAGAAGCCTGAGCTGGCTGACCTGCCGACCCTCTTTGATTACagggcatattgattcagctggatcgagatacggctaaagattgtaggaacactgtagataaaaatgatgttgtaaatcgagctaggcttttgttctttgtttatatgacatcacagatcca #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATAC-TTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACCTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCGT-TACTGAAGTGGAGGGGACCTGCACTGGGaagtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATAC-TTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACCTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CCGTTACTGAAGTGGAGGGGACCTGCACTGGGaagtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATAC-TTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACcTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCC-GTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATA-CTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACCTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCG-TTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Pairagon CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATA-CTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaaCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACCTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCG-TTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Exonerate_protein2genome CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaaCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACCTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCGTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from Exonerate_coding2genome TCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATA-CTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgaagctggttaatgtcacctacttcttctccaaACAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACCTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCGTT-ACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ccctcgtgaagctggttaatgtcacctacttcttctccaaa------CAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACCTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCGTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtatgtctcctctttacgggagcaggttctgttgaatgcatcaattatga #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAG-ATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt acacagctttactgaatatacttcattaacacagcgtttcctttcctcaggtGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGCATCAGATATTTAGAGAATTTCTATGTAT-TCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCAtgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAG-ATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAt acacagctttactgaatatacttcattaacacagcgtttcctttcctcaggtGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGCATCAGATATTTAGAGAATTTCTAT-GTATTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCAtgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGCATCAGATATTTAGAGAATTTCTATGTATTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAG-ATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGCATCAGATATTTAGAGAATTTCTATGTA-TTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAG-ATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGCATCAGATATTTAGAGAATTTCTATGTA-TTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGCATCAGATATTTAGAGAATTTCTATGTATTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGCATCAGATATTTAGAGAATTTCTATGTATTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTATTGCTTACCTATAAGCATCAGATATTTAGAGAATTTCTATGTATTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGAC-AATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAACAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCA-ATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from CESAR GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGAC-AATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAACAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTC-AATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Spaln_aa2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGAC-AATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCCTTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAcAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTC------------AATgctccagagctttccctgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Spaln_nt2Genome ATGGCTATGAGTTCTTTGCCAAGAG---ACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGA-CAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccaggttgtagGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAACAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCA-ATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Pairagon GTTGTAGAAGATGGCTATGAGTTCTTTGC---CAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTG-ACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCA--------------------------------------------------------------------- catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGT---AGGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAACAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCAATGCTCCAGAGCTTTCCCTGTAAGGACAAGGAATAGCCTGTAGGGAATAGCCTGTCCTTAGAAACTGGC Alignment from Exonerate_protein2genome GTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGAC-AATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGT-----TCCTTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTAGGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAACAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCAATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Exonerate_coding2genome GTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGAC-AATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGT-----TCCTTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTAGGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAACAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCAATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAG---TTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAACAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCAATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGG-TCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCATGAGTCACAGACTCCTACCGCCCCCCCCAGCGAATGCAACAGG-TAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGG-TCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCATGAGTCACAGACTCCTACCGCCCCCCCCAGCGAATGCAACAG-GTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCATGAGTCACAGACTCCTACCGCCCCCCCCAGCGAATGCAACAGGTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGG-TCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCATGAGTCACAGACTCCTACCGCCCCCCCCAGCGAATGCAACAG-GTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGG-TCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCATGAGTCACAGACTCCTACCGCCCCCCCCAGCGAATGCAACAGGT-AATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCATGAGTCACAGACTCCTACCGCCCCCCCCAGCGAATGCAACAGGTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCATGAGTCACAGACTCCTACCGCCCCCCCCAGCGAATGCAACAGGTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAATCTGCCAGCATGAGTCACAGACTCCTACCGCCCCCCCCAGCGAATGCAACAGGTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAG-TCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagatCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGCTCTACAAAGAATCCTATTGTTTTCCAGCCAC-TTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from CESAR atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAG-TCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagatCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGCTCTACAAAGAATCCTATTGTTTTCCAGCCA-CTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAG-TCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGcTCTACAAAGAATCCTATTGTTTTCCAGCCACT-TCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAG-TCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGCTCTACAAAGAATCCTATTGTTTTCCAGCC-ACTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Pairagon ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAG-TCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGCTCTACAAAGAATCCTATTGTTTTCCAGCCA-CTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGCTCTACAAAGAATCCTATTGTTTTCCAGCCACTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Exonerate_coding2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGCTCTACAAAGAATCCTATTGTTTTCCAGCCACTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGCTCTACAAAGAATCCTATTGTTTTCCAGCCACTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGG-TTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAG-AGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from CESAR ACCCACCTGCCTGGGTTT-GTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAA-GAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Spaln_aa2Genome ACCCACCTGCCTGGG-TTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCcTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGA-GTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTG-TGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAG-AGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Pairagon ACCCACCTGCCTGGGTTT-GTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAG-AGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gcttaaaatatctgtacaaatttttctttctctctcaaattacaatgtagGCCCACCTGCCTGGCCTTGGTGGAGCAGGCTGGAGCTCGGAAAGCCAAGGGAGCACAAGAGTGGCATGTCTAAGTGTTAATGATGTCTTTGTGGTTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAAgtgagtaatcctgcagctagttgtgatggcctagggccaggtagcaatcc #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACA-GATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACACGATCCTATCAACAACCAGCCTCTCTCAGAGGGGC-GCTCATTGATATTAAAggtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACA-GATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACACGATCCTATCAACAACCAGCCTCTCTCAGAGGGG-CGCTCATTGATATTAAAggtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACA-GATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAcGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCG-CTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACA-GATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACACGATCCTATCAACAACCAGCCTCTCTCAGAGGGGC-GCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACA-GATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACACGATCCTATCAACAACCAGCCTCTCTCAGAGGGGC-GCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Exonerate_protein2genome ATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACACGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Exonerate_coding2genome ATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACACGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from GeneWise TCCCTGATCTGC------TCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttcctTCTCTGTTGTGTGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACACGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagtaGCACACCCAATTCGACCCAAGCCTCCCCTCTGCTACCAGTATTCCAGCCATCCTAAAGG-CTTGCAAGATGAGTGGgtaatgctaatgaccatggcttcttgtatgcagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCC-TCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagtaGCACACCCAATTCGACCCAAGCCTCCCCTCTGCTACCAGTATTCCAGCCATCCTAAAGG-CTTGCAAGATGAGTGGgtaatgctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTcCCCTCTGCTACCAGTATTCCAGCCATCCTAAAGGC-TTGCAAGATGAGTGGgtaatgctaatgaccatggcttcttgtatgcagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCC-TCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCCTCTGCTACCAGTATTCCAGCCATCCT-AAAGGCTTGCAAGATGAGTGGgtaatgctaatgaccatggcttcttgtatgcagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCT-CCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCCTCTGCTACCAGTATTCCAGCCATCCT-AAAGGCTTGCAAGATGAGTGGgtaatgctaatgaccatggcttcttgtatgcagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCCTCTGCTACCAGTATTCCAGCCATCCTAAAGGCTTGCAAGATGAGTGGgtaatgctaatgaccatggcttcttgtatgcagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCCTCTGCTACCAGTATTCCAGCCATCCTAAAGGCTTGCAAGATGAGTGGgtaatgctaatgaccatggcttcttgtatgcagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCCTCTGCTACCAGTATTCCAGCCATCCTAAAGGCTTGCAAGATGAGTGGGTAATGCTAATGACCATGGCTTCTTGTATGCAGGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAG-ACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGCACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATG-TGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgaagcacatttcactgtagactccccaactattgtttattatactgta Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAG-ACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaatgctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGCACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACAT-GTGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgaagcacatttcactgtagactccccaatccaacccttcttccccaca Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGCACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGTGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaactattgtttattatactgta Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAG-ACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGCACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATG-TGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaactattgtttattatactgta Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAG-ACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGCACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATG-TGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaactattgtttattatactgta Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAG-ACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACAC--GATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGCACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGT---GCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaactattgtttattatactgta Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAG-ACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACAC--GATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGCACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGT---GCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaactattgtttattatactgta Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAG-ACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAA--------------------------------------------------- CCTTGCAAGATGAGTGGGTGAGTCTAATGCCTGATAGTGCTTTCCCCCAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGCACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGT-GCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGGTGAAGCACATTTCACTGTAGACTCCCCAACTATTGTTTATTATACTGTA #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG taggtcacatttcactgtagactccccaatccaacccttcttccccacagccCTGGCCACCCTAAAACCACAACGCTGGCCTTATTGTACCTCAAGCTGTGCCAA-CTCACCACCCAGTGTAGTGgtatgttttgcacccttagcaccccactagcaaatgacacttcatgagag Alignment from CESAR ctCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tgaagcacatttcactgtagactccccaatccaacccttcttccccacagccCTGGCCACCCTAAAACCACAACGCTGGCCTTATTGTACCTCAAGCTGTGC-CAACTCACCACCCAGTGTAGTGgtatgttttgcacccttagcaccccactagcaaatgacacttcatgagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCC taggtcacatttcactgtagactccccaatccaacccttcttccccacagCCCTGGCCACCCTAAAACCACAAcGCTGGCCTTATTGTACCTCAAGCTGTGCCAACTCACCACCCAgtgtagtggtatgttttgcacccttagcaccccactagcaaatgacacttcatgagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG taggtcacatttcactgtagactccccaatccaacccttcttccccacagCCCTGGCCACCCTAAAACCACAACGCTGGCCTTATTGTACCTCAAGCTGTGCCAA-CTCACCACCCAGTGTAGTGgtatgttttgcacccttagcaccccactagcaaatgacacttcatgagag Alignment from Pairagon CTCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG taggtcacatttcactgtagactccccaatccaacccttcttccccacagCCCTGGCCACCCTAAAACCACAACGCTGGCCTTATTGTACCTCAAGCTGTGCCAA-CTCACCACCCAGTGTAGTGgtatgttttgcacccttagcaccccactagcaaatgacacttcatgagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG taggtcacatttcactgtagactccccaatccaacccttcttccccacagCCCTGGCCACCCTAAAACCACAACGCTGGCCTTATTGTACCTCAAGCTGTGCCAACTCACCACCCAGTGTAGTGgtatgttttgcacccttagcaccccactagcaaatgacacttcatgagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG taggtcacatttcactgtagactccccaatccaacccttcttccccacagCCCTGGCCACCCTAAAACCACAACGCTGGCCTTATTGTACCTCAAGCTGTGCCAACTCACCACCCAGTGTAGTGgtatgttttgcacccttagcaccccactagcaaatgacacttcatgagag Alignment from GeneWise -------------------------------------------------GCTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG TAGGTCACATTTCACTGTAGACTCCCCAATCCAACCCTTCTTCCCCACAGCCCTGGCCACCCTAAAACCACAACGCTGGCCTTATTGTACCTCAAGCTGTGCCAACTCACCACCCAGTGTAGTGgtatgttttgcacccttagcaccccactagcaaatgacacttcatgagag #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTAGGGAATGCCT-TGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaatcttttgt Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTAGGGAATGCC-TTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttatgtgtgtga Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTAGGGAATGCCTTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaatcttttgt Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTAGGGAATGCCT-TGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaatcttttgt Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAA-CACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTAGGGAATGCCT-TGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaatcttttgt Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTAGGGAATGCCTTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaatcttttgt Alignment from Exonerate_coding2genome atggagacccataaattgagacctttcgtgaatgttctttcttcttacagaggatttattatctgtctttggagttctacatgggccggacactacaaaaccaccatggtaaatcttgccctagggaatgccttgatgaggctacttaccaggtacgggataaagcggcgtctatgtaagcatttgggttttaatcttttgt Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTAGGGAATGCCTTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttaatcttttgt #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATC-CAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aaggccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagtcAATGTTGGTGGCTACATTCCTGGCTGTGCTGGACCGGAACCTAGCTG-GAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from CESAR tcAATGTTGGCGGCTACATC-CAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagtcAATGTTGGTGGCTACATTCCTGGCTGTGCTGGACCGGAACCTAGCT-GGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aaggccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCCTGGCTGTGCTGGACCGGAACCTAGCTGGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATC-CAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aaggccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCCTGGCTGTGCTGGACCGGAACCTAGCTG-GAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Pairagon TCAATGTTGGCGGCTACA-TCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aaggccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCCTGGCTGTGCTGGACCGGAACCTAGCTG-GAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aaggccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCCTGGCTGTGCTGGACCGGAACCTAGCTGGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aaggccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCCTGGCTGTGCTGGACCGGAACCTAGCTGGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aaggccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCCTGGCTGTGCTGGACCGGAACCTAGCTGGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgccgttcattgttggttaacctctctcctacctcatagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTG-TCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacagtttggttcaagctgttactctacccaacatctcataacatggca Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgccgttcattgttggttaacctctctcctacctcatagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGT-GTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacagtttggttcaagctgttactctacccaacatctcataacatggca Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgccgttcattgttggttaacctctctcctacctcatagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacagtttggttcaagctgttactctacccaacatctcataacatggca Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgccgttcattgttggttaacctctctcctacctcatagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTG-TCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacagtttggttcaagctgttactctacccaacatctcataacatggca Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgccgttcattgttggttaacctctctcctacctcatagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTG-TCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacagtttggttcaagctgttactctacccaacatctcataacatggca Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgccgttcattgttggttaacctctctcctacctcatagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacagtttggttcaagctgttactctacccaacatctcataacatggca Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgccgttcattgttggttaacctctctcctacctcatagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacagtttggttcaagctgttactctacccaacatctcataacatggca Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgccgttcattgttggttaacctctctcctacctcatagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGTCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacagtttggttcaagctgttactctacccaacatctcataacatggca #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATG-GATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTAT-GGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCcATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGG-ATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCT-CATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATG-GATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCT-CATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATG-GATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTAC--GAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGG---ATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTAC--GAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGG---ATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCAC-CTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGG-ATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc #### Pygm_ID1687_11 --> 0 - 2 Original Alignment CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGC-ATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCCATCAACATGTCACACCTGTGCATTACAGGCTCAC-CGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCatgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from CESAR CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGC-ATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCCATCAACATGTCACACCTGTGCATTACAGGCTCA-CCGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCatgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Spaln_aa2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCCATCAACATGTCACACCTGTGCATTACAGGCTCACCGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Spaln_nt2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGC-ATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCCATCAACATGTCACACCTGTGCATTACAGGCTCAC-CGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Pairagon CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACG-CATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCCATCAACATGTCACACCTGTGCATTACAGGCTCAC-CGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Exonerate_protein2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCCATCAACATGTCACACCTGTGCATTACAGGCTCACCGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Exonerate_coding2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCCATCAACATGTCACACCTGTGCATTACAGGCTCACCGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from GeneWise CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCCATCAACATGTCACACCTGTGCATTACAGGCTCACCGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGC-GTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAG-CGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAcGCAAACATGAAACAGGCAACATCAGAAAAGCG-TTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGC-GTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAA-GCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGC-GTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAACGCAAACATGAAACAGGCAACATCAGAAAAGCGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt #### Rasgrp2_ID1703_2 --> 2 - 2 Original Alignment atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATG-ATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagatGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGCATGTATCCATGGTACATACCTTCCACTCAGTTGGCTT-AAAACTGCTCCACttgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from CESAR atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATG-ATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACtt ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagatGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGCATGTATCCATGGTACATACCTTCCACTCAGTTGGCT-TAAAACTGCTCCACttgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Spaln_aa2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATG-ATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGcATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTA-AAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Spaln_nt2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATG-ATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGCATGTATCCATGGTACATACCTTCCACTCAGTTGGCTT-AAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Pairagon ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATG-ATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGCATGTATCCATGGTACATACCTTCCACTCAGTTGGCTT-AAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Exonerate_protein2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATG-ATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCT--TCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGCATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTA---AAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Exonerate_coding2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATG-ATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCT--TCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGCATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTA---AAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from GeneWise ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCTTCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGCATGTATCCATGGTACATACCTTCCACTCAGTTGGCTTAAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTG-GAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGCGAGCGATTTATCTCTCTATTCAACAGCG-GCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTG-GAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGCGAGCGATTTATCTCTCTATTCAACAGC-GGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGCGAGCGATTTATCTCTCTATTCAACAGCGGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTG-GAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGCGAGCGATTTATCTCTCTATTCAACAGCGGC-CTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTG-GAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGCGAGCGATTTATCTCTCTATTCAACAGCGGC-CTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGCGAGCGATTTATCTCTCTATTCAACAGCGGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGCGAGCGATTTATCTCTCTATTCAACAGCGGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGCGAGCGATTTATCTCTCTATTCAACAGCGGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCT-TTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGaggttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from CESAR TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCT-TTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGaggttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCCTGGTACACTATTGC---AAAGGATCCCAAGGGGCTCTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Spaln_nt2Genome TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCCTGGTACACTATTGC---AAAGGATCCCAAGGGGCTC-TTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Pairagon TTCTCTGGGCT-CTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCCTGGTACACTATTGC---AAAGGATCCCAAGGGGCTC-TTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCCTGGTACACTATTGC---AAAGGATCCCAAGGGGCTCTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Exonerate_coding2genome AAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagttttcagggctcctggtacactattgcAAAGGATCCCAAGGGGCTCTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from GeneWise ---------------------------------------------------TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ATCTTGCAGGTGGGAGGTGAACCTAGACCTTGCTTTCCATTGTTTTGCAGTTTTCAGGGCTCCTGGTACACTATTGCAAAG---GATCCCAAGGGGCTCTTTTG-CAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAG-CTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagccCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGCTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAG-ACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTggtaagtctctctgtgaaccctccatcttagccCATTTTCAGCACATTATA Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAG-CTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagccCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGCTTGGTGTTCCGGGCATGCATGTTGCCCATGCTA-GACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTggtaagccttcttgctttcatttttcaacagccCATTTTCAGCACATTATA Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGCTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGGTAAGTCTCTCTGTGAACCCTCCATCTTAGCCCATTTTCAGCACATTATA Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGC-TGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGCTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAG-ACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGG----GgttggtaagtctctctgtgaaccctccatcttagCCCATTTTCAGCACATTATA Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGC-TGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGCTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAG-ACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGgtaagtctctctgtgaaccctccatcttagCCCATTTTCAGCACATTATA Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGCTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGgtaagtctctctgtgaaccctccatcttagCCCATTTTCAGCACATTATA Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGCTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGgtaagtctctctgtgaaccctccatcttagCCCATTTTCAGCACATTATA Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGCTTGGTGTTCCGGGCATGCATGTTGCCCATGCTAGACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGGTAAGTCTCTCTGTGAACCCTCCATCTTAGCCCATTTTCAGCACATTATA #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCT-GTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaaggGACCACCCCTCTCGTAATAAAGCGGCATTTTACCGGTGTTC-AATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from CESAR gGACCACCCCGCT-GTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaaggGACCACCCCTCTCGTAATAAAGCGGCATTTTACCGGTGTT-CAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTCGTAATAAAGCGGCATTTTACCGGTGTTCAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Spaln_nt2Genome GGACCACCCCGCT-GTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTCGTAATAAAGCGGCATTTTACCGGTGTTC-AATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Pairagon GGACCACCCCGCT-GTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTCGTAATAAAGCGGCATTTTACCGGTGTTC-AATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTCGTAATAAAGCGGCATTTTACCGGTGTTCAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTCGTAATAAAGCGGCATTTTACCGGTGTTCAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTCGTAATAAAGCGGCATTTTACCGGTGTTCAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc #### Rela_ID1129_6 --> 2 - 1 Original Alignment ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCA-GCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagaatttggtgtgttctttttgcatgttttcttttctcttgagtcCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCACGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCT-ACATCCGATTTTTGATAACcgtactgggcagattcagatagtcacaaagtctttcttctcagccccattc Alignment from CESAR ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCA-GCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagaatttggtgtgttctttttgcatgttttcttttctcttgagtcCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCACGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTC-TACATCCGATTTTTGATAACcgtactgggcagattcagatagtcacaaagtctttcttctcagccccattc Alignment from Spaln_aa2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgtgttctttttgcatgttttcttttctcttgagTCCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCACGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTACATCCGATTTTTGATAACCgtactgggcagattcagatagtcacaaagtctttcttctcagccccattc Alignment from Spaln_nt2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCA-GCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgtgttctttttgcatgttttcttttctcttgagTCCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCACGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCT-ACATCCGATTTTTGATAACCgtactgggcagattcagatagtcacaaagtctttcttctcagccccattc Alignment from Pairagon TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCA-GCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgtgttctttttgcatgttttcttttctcttgagTCCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCACGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCT-ACATCCGATTTTTGATAACCgtactgggcagattcagatagtcacaaagtctttcttctcagccccattc Alignment from Exonerate_protein2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgtgttctttttgcatgttttcttttctcttgagTCCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCACGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTACATCCGATTTTTGATAACCgtactgggcagattcagatagtcacaaagtctttcttctcagccccattc Alignment from Exonerate_coding2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgtgttctttttgcatgttttcttttctcttgagTCCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCACGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTACATCCGATTTTTGATAACCgtactgggcagattcagatagtcacaaagtctttcttctcagccccattc Alignment from GeneWise TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagaatttggtgtgttctttttgcatgttttcttttctcttgagTCCCCATGGAGGAGCAGCATGGGGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTGACAGTGCGGGACCCACGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTACATCCGATTTTTGATAACCgtactgggcagattcagatagtcacaaagtctttcttctcagccccattc #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGG-AACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagggGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGCAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCC-TCTGTGTGACAGGGTGCAAAAGggtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGG-AACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagggGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGCAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCC-TCTGTGTGACAGGGTGCAAAAGggtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGG-AACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGcAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTCTG-TGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGG-AACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGCAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCT-CTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGG-AACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGCAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCT-CTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGCAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGCAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGCAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGAT-ACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacaggCCCTCCACAGACCCACTGTATGACACACCTGATCACAAGAGGTGTGCAGGCTGGTGGGTCACAAC-GCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGAT-ACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacaggCCCTCCACAGACCCACTGTATGACACACCTGATCACAAGAGGTGTGCAGGCTGGTGGGTCACAA-CGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATCACAAGAGGTGTGCAGGCTGGTGGGTCACAACGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGAT-ACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATCACAAGAGGTGTGCAGGCTGGTGGGTCACAAC-GCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGAT-ACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATCACAAGAGGTGTGCAGGCTGGTGGGTCACAAC-GCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATCACAAGAGGTGTGCAGGCTGGTGGGTCACAACGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Exonerate_coding2genome AAGCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacAGGCCCTCCACAGACCCACTGTATGACACACCTGATCACAAGAGGTGTGCAGGCTGGTGGGTCACAACGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATCACAAGAGGTGTGCAGGCTGGTGGGTCACAACGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGC-TCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tggggatcccactgagctagacagatagttcctaacctggtttcttccaggaATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAACTCATC------TATTGTCGTACCaggtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from CESAR gtGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tggggatcccactgagctagacagatagttcctaacctggtttcttccaggaATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAACTCATC------TATTGTCGTACCaggtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Spaln_aa2Genome GTGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGgTCCTCAGAACTCATGTTCCAGGACCTTGTACAACTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGC-TCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAACTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Pairagon GTGTCTCTTTGGAGG-GCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAACTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Exonerate_protein2genome GTGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAACTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Exonerate_coding2genome GTGTCTCTTTGGAG-GGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCCTCAGAACTCATGTTCCAGGACCTTGTACAACTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from GeneWise CTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccaggaatctctttggagGTCC---------TCAGAACTCATGTTCCAGGACCTTGTACAACTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTG-CGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTACTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCAC-TAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAggtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGC-CAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTACTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCA-CTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAggtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTACTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGC-GCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTACTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCA-CTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGC-GCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTACTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCA-CTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTACTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTACTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGGA- aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTACTGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGGTAgttgacaaccatcttctcctagagcatgagtcatataccacacctcc #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACC-GGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTCGGAAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAA-AGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from CESAR GACCGCCTTATCGGGGCCACC-GGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTCGGAAGCTTCAGCCATTTCACCTTGTGGGATCTGGAA-AAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTCGGAAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAAAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Spaln_nt2Genome CTGGAGCGGGA CTTCGACCGCCTTATCGGGGCCAC-CGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ATTTTGCATGAgtgtgtccaatgtacaaacccgcgtccgggcgcgcgcag----GACCGCCTTATCGGGGCCACTCGGAAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAA-AGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Pairagon GACCGCCTTATCGGGGCCAC-CGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTCGGAAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAA-AGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Exonerate_protein2genome attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcaggaccgccttatcggggccactcggaagcttcagccatttcaccttgtgggatctggaaaagtcccaggtccagatgccatagtgcatagggccctaggatggcccaccctagcagcagcagtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Exonerate_coding2genome attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcaggaccgccttatcggggccactcggaagcttcagccatttcaccttgtgggatctggaaaagtcccaggtccagatgccatagtgcatagggccctaggatggcccaccctagcagcagcagtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCC------CAGGTCCCTGAGGAC attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTCGGAAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAAAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTGGGTAGGCTGAGGAAATTTACCTCTGATggctgacaattcctctatct #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAAT-CCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCCACTCACCA------TGCCTGCAAAGCCAACTCTCAGACC-CTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCC-CACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAG-ACCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCC-CACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCcCACTCA------CCATGCCTGCAAAGCCAACTCTCAGA-CCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCC-ACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGA-CCCTATGCTCATCCACTTCT---TCCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAAT-CCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCCACTCACCA------TGCCTGCAAAGCCAACTCTCAGA-CCCTATGCTCATCCACTTCT---TCCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCCACTCACCATGCCTGCA------AAGCCAACTCTCAGACCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCC-----CCACTCACCATGCCTGCAAAGCCAACTCTC-AGACCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCCACTCACCATGCCTGCAAAGCCAACTCTCAGA------CCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGC-TTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTCTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGAT-CCTTAACAGCAGTCCCCGCACACCTATCaggtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGC-TTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTCTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGA-TCCTTAACAGCAGTCCCCGCACACCTATCaggtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTCTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATC-AAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTCTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGA-TCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGG-CTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTCTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGAT-CCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTCTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTCTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTCTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTGCGCACTGGTCACAAC-CGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gggtaccacaaagggactacaactatgtgggcttgggggtctctttgcaggGTGCCAGAGATTCTATTGCGCACAGGTCATAATCCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATG-CATGCTCACTGAATCAgtaaggccctttcactggtggtattgaggggagactatacggagctcttt Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCACAAC-CGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gggtaccacaaagggactacaactatgtgggcttgggggtctctttgcaggGTGCCAGAGATTCTATTGCGCACAGGTCATAATCCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTAT-GCATGCTCACTGAATCAgtaaggccctttcactggtggtattgaggggagactatacggagctcttt Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAAC-CGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gggtaccacaaagggactacaactatgtgggcttgggggtctctttgcagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATcCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGC-ATGCTCACTGAATCAgtaaggccctttcactggtggtattgaggggagactatacggagctcttt Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAA-CCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gggtaccacaaagggactacaactatgtgggcttgggggtctctttgcagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATG-CATGCTCACTGAATCAgtaaggccctttcactggtggtattgaggggagactatacggagctcttt Alignment from Pairagon GGCCCCAGAGATTCTAGTGCGCACTGGTCACAA-CCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gggtaccacaaagggactacaactatgtgggcttgggggtctctttgcagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATG-CATGCTCACTGAATCAgtaaggccctttcactggtggtattgaggggagactatacggagctcttt Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAAC-CGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gggtaccacaaagggactacaactatgtgggcttgggggtctctttgcagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGCATGCTCACTGAATCAGtaaggccctttcactggtggtattgaggggagactatacggagctcttt Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAAC-CGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gggtaccacaaagggactacaactatgtgggcttgggggtctctttgcagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGCATGCTCACTGAATCAGtaaggccctttcactggtggtattgaggggagactatacggagctcttt Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAAC-CGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGCTCACTGGATCG gggtaccacaaagggactacaactatgtgggcttgggggtctctttgcagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGC-ATGCTCACTGAATCAgtaaggccctttcactggtggtattgaggggagactatacggagctcttt #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagtTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATA-CATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGggtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from CESAR cTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagtTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCAT-ACATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGggtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATACATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACAC-TAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCA-TACATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Pairagon CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCAT-ACATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATACATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATACATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATACATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGC-CGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctggggttgggtagcctcattatttgttctttctttctttccctccagcATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCCGGGGCAAAGAGCAG------TTGGCACAGC-GAGGAGCCGAGCATGG---AAGGATGGAGGTGGT---GCGCCTCTCAATTTC------CCAAAAGTTGCACATCGTGTCCGGggtaagttagggtaaagttacccccctttgtcgatggggtcatgggatagg Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGC-CGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctggggttgggtagcctcattatttgttctttctttctttccctccagcATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCCGGGGCAAAGAGCAG------TTGGCACAG-CGAGGAGCCGAGCATGG---AAGGATGGAGGTGGT---GCGCCTCTCAATTTC------CCAAAAGTTGCACATCGTGTCCGGggtaagttagggtaaagttacccccctttgtcgatggggtcatgggatagg Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttgggtagcctcattatttgttctttctttctttccctccagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCCGGGG------CAAAGAGCAGTTGGCACAGCGAGGAGCCGAGCATGG---AAGGATGGAGGTGGT---GCGCCTCTCAATTTC------CCAAAAGTTGCACATCGTGTCCGGGgtaagttagggtaaagttacccccctttgtcgatggggtcatgggatagg Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCC-GGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttgggtagcctcattatttgttctttctttctttccctccagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCCGGGGCAAAGAGC------AGTTGGCAC-AGCGAGGAGCCGAGCATG---GAAGGATGGAGGTGG---TGCGCCTCTCAATTTC------CCAAAAGTTGCACATCGTGTCCGGGgtaagttagggtaaagttacccccctttgtcgatggggtcatgggatagg Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGG-CCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttgggtagcctcattatttgttctttctttctttccctccagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCCGGGGCAAAGAGC------AGTTGGCACAGC-GAGGAGCCGAGCATG---GAAGGATGGAGGTGG---TGCGCCTCTCAATTTC------CCAAAAGTTGCACATCGTGTCCGGGgtaagttagggtaaagttacccccctttgtcgatggggtcatgggatagg Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttgggtagcctcattatttgttctttctttctttccctccagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCCGGGG------CAAAGAGCAGTTGGCACAGCGAGGAGCCGAGCATGG---AAGGATGGAGGTGGT---GCGCCTCTCAATTTC------CCAAAAGTTGCACATCGTGTCCGGGgtaagttagggtaaagttacccccctttgtcgatggggtcatgggatagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttgggtagcctcattatttgttctttctttctttccctccagCATTGAGGAAATTTCAGCTGACTCAGAGGACGAGTTTGAGGAAGAACAAAGAGGCCCGGGG------CAAAGAGCAGTTGGCACAGCGAGGAGCCGAGCATGG---AAGGATGGAGGTGGT---GCGCCTCTCAATTTC------CCAAAAGTTGCACATCGTGTCCGGGgtaagttagggtaaagttacccccctttgtcgatggggtcatgggatagg #### Rrp12_ID8296_27 --> 1 - 2 Original Alignment aTTCGAGTTGGTGAAGGGTCTGCTA-CCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag tctgatgagggattcctggcaacatcaattcggtctaactccctacacaggTATGAGTTGGTCAAGGGATTGTTACCCTGCAGAGTACCACAAAGTACTGATAAACA-AAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTGTGCAAAGCAAAGGTGACaggtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from CESAR aTTCGAGTTGGTGAAGGGTCTGCTACCC-GCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag tctgatgagggattcctggcaacatcaattcggtctaactccctacacaggTATGAGTTGGTCAAGGGATTGTTACCCTGCAGAGTACCACAAAGTACTGATAAAC-AAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTGTGCAAAGCAAAGGTGACaggtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Spaln_aa2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCCTGCAGAGTACCACAAAGTACTGATAAACAAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTGTGCAAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Spaln_nt2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCC-GCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCCTGCAGAGTACCACAAAGTACTGATAAACA-AAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTGTGCAAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Pairagon ATTCGAGTTGGTGAAGGGTCTGCTACCC-GCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCCTGCAGAGTACCACAAAGTACTGATAAACA-AAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTGTGCAAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Exonerate_protein2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCCTGCAGAGTACCACAAAGTACTGATAAACAAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTGTGCAAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG tctgatgagggattcctggcaacatcaattcggtctaactccctacacagGTATGAGTTGGTCAAGGGATTGTTACCCTGCAGAGTACCACAAAGTACTGATAAACAAAGGAAAGCAGAGACCCGGGCAAAGAAATATAGGGCCTTGAGTCAGGCTGCTGTAGAGGAGGAAGAAGTGGAAGAAGAGGAACAGGAGCCTGTGCAAAGCAAAGGTGACAGgtagggcaaatctcttctcagcaatgagttagctggggttgggtagcctc #### Rrp12_ID8297_26 --> 0 - 2 Original Alignment ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGA-CGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATGACATGCGACCGGCACTTCCGGATGAAGCTCCGGAATCTGTTCA-CAAGTTCACCCGCAAGTTTgggtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from CESAR ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGA-CGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATGACATGCGACCGGCACTTCCGGATGAAGCTCCGGAATCTGTTC-ACAAGTTCACCCGCAAGTTTgggtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Spaln_aa2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGA-CGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATGACATGCGAcCGGCACTTCCGGATGAAGCTCCGGAATCTGTTCAC-AAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Spaln_nt2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGA-CGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATGACATGCGACCGGCACTTCCGGATGAAGCTCCGGAATCTGTTCA-CAAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Pairagon ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGA-CGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATGACATGCGACCGGCACTTCCGGATGAAGCTCCGGAATCTGTTCA-CAAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Exonerate_protein2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGA-CGGCACTTCCGGATGAAGCTTCGGAACCTGTTC--ATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATGACATGCGACCGGCACTTCCGGATGAAGCTCCGGAATCTGTTCAC---AAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from Exonerate_coding2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGA-CGGCACTTCCGGATGAAGCTTCGGAACCTGTTC--ATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATGACATGCGACCGGCACTTCCGGATGAAGCTCCGGAATCTGTTCAC---AAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct Alignment from GeneWise ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacggatgggcaaggtgggtagtgcaattgttctccttcctggtagATGGAAGCTATAGGGAAACTGTCGGATGACATGCGACCGGCACTTCCGGATGAAGCTCCGGAATCTGTTCACAAGTTCACCCGCAAGTTTGGgtaagaccaaagtggagggagaatgaaacatggtgtatctgcagagtcct #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ataatatgtcagacttggtagcactgactgtatctaacttttgaccctagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAA-GACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATgcgtaagcgggtaggagttggcagcgtggatggtatgctgaataattagtga Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ataatatgtcagacttggtagcactgactgtatctaacttttgaccctagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCC-AAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATgcgtaagcgggtaggagttggcagcgtggatggtatgctgaataattagtga Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacttggtagcactgactgtatctaacttttgaccctagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCgtaagcgggtaggagttggcagcgtggatggtatgctgaataattagtga Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGG-CACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacttggtagcactgactgtatctaacttttgaccctagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGG-CCCAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCgtaagcgggtaggagttggcagcgtggatggtatgctgaataattagtga Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGG-CACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacttggtagcactgactgtatctaacttttgaccctagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCA-AAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCgtaagcgggtaggagttggcagcgtggatggtatgctgaataattagtga Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacttggtagcactgactgtatctaacttttgaccctagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCGtaagcgggtaggagttggcagcgtggatggtatgctgaataattagtga Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacttggtagcactgactgtatctaacttttgaccctagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCGtaagcgggtaggagttggcagcgtggatggtatgctgaataattagtga Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacttggtagcactgactgtatctaacttttgaccctagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAGACACCTCAGATTGTACTCAGTGGCAGTGGTAAGAGCATGAATGCGtaagcgggtaggagttggcagcgtggatggtatgctgaataattagtga #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTG-TCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGCTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGA-AACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from CESAR cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacaggctttccggcaactgctcccaccgcttccatggaaagggctcaggcaagatgaaactgagcggtggatgaagaagctggatgaggaggcagtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Spaln_aa2Genome GCATTCCGGCAGCTG-TCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGcTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAA-ACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Spaln_nt2Genome GCATTCCGGCAGCTG-TCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGCTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAA-ACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Pairagon cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacaggctttccggcaactgctcccaccgcttccatggaaagggctcaggcaagatgaaactgagcggtggatgaagaagctggatgaggaggcagtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Exonerate_protein2genome cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacaggctttccggcaactgctcccaccgcttccatggaaagggctcaggcaagatgaaactgagcggtggatgaagaagctggatgaggaggcagtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Exonerate_coding2genome cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacaggctttccggcaactgctcccaccgcttccatggaaagggctcaggcaagatgaaactgagcggtggatgaagaagctggatgaggaggcagtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from GeneWise cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacaggctttccggcaactgctcccaccgcttccatggaaagggctcaggcaagatgaaactgagcggtggatgaagaagctggatgaggaggcagtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAA-TTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAACTTTTGCTGTATACTAGGGGAATCTCCCACAT-TGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAA-TTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAACTTTTGCTGTATACTAGGGGAATCTCCCACA-TTGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAACTTTTGCTGTATACTAGGGGAATCTCCCACATTGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAA-TTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAACTTTTGCTGTATACTAGGGGA-ATCTCCCACATTGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTC------------------------------------TGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAACTTTTGCTGTATACTAGGGGAATCTCCCACATTGA------------------------------------GTTGGTGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAACTTTTGCTGTATACTAGGGGAATCTCCCACATTGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAACTTTTGCTGTATACTAGGGGAATCTCCCACATTGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAACTTTTGCTGTATACTAGGGGAATCTCCCACATTGAGTTGGTGGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAG-GGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagaaGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGCGGGCGTCGGCTGCGGCAACTACAGCAACTACAGC-GCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAG-GGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagaaGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGCGGGCGTCGGCTGCGGCAACTACAGCAACTACAG-CGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGCGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAG-GGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGCGGGCGTCGGCTGCGGCAACTACAGCAACTACAGC-GCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAG-GGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGCGGGCGTCGGCTGCGGCAACTACAGCAACTACAGC-GCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGCGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGCGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAGAGAAGCGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGA-GTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGACGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGC-GGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAaggtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGA-GTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGACGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGC-GGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAaggtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGACGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGA-GTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGACGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGC-GGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGA-GTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGACGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGC-GGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGACGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGACGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGACGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTG-AATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA tgggatgcttaagggtagaacatgattgttgctaattatatgtttaacagggGTACTCCAGGATGGAGAAGATGTGCTGGTGCAATGTGAACATGGTGGACAAGGAGCGGGCTG-TCAAAATGTGGAGCTTCGGAAAGAGAAGGCTGATTACCTGAGCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtgagcctagtaagtctgagagaaaccttacccatctggtccacagCAAA Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTG-AATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA tgggatgcttaagggtagaacatgattgttgctaattatatgtttaacagggGTACTCCAGGATGGAGAAGATGTGCTGGTGCAATGTGAACATGGTGGACAAGGAGCGGGCTGTCA-AAATGTGGAGCTTCGGAAAGAGAAGGCTGATTACCTGAGCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtgagcctagtaagtctgagagaaaagccttcttcttccttcttagCAAA Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA tgggatgcttaagggtagaacatgattgttgctaattatatgtttaacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGCAATGTGAACATGGTGGACAAGGAGCGGGCTGTCAAAATGTGGAGCTTCGGAAAGAGAAGGCTGATTACCTGAGCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtgagcctagtaagtctgagagaaaccttacccatctggtccacagCAAA Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTG-AATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA tgggatgcttaagggtagaacatgattgttgctaattatatgtttaacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGCAATGTGAACATGGTGGACAAGGAGCGGGCTGTCAA-AATGTGGAGCTTCGGAAAGAGAAGGCTGATTACCTGAGCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtgagcctagtaagtctgagagaaaccttacccatctggtccacagCAAA Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTG-AATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA tgggatgcttaagggtagaacatgattgttgctaattatatgtttaacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGCAATGTGAACATGGTGGACAAGGAGCGGGCTGTCAA-AATGTGGAGCTTCGGAAAGAGAAGGCTGATTACCTGAGCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtgagcctagtaagtctgagagaaaccttacccatctggtccacagCAAA Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA tgggatgcttaagggtagaacatgattgttgctaattatatgtttaacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGCAATGTGAACATGGTGGACAAGGAGCGGGCTGTCAAAATGTGGAGCTTCGGAAAGAGAAGGCTGATTACCTGAGCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtgagcctagtaagtctgagagaaaccttacccatctggtccacagCAAA Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA tgggatgcttaagggtagaacatgattgttgctaattatatgtttaacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGCAATGTGAACATGGTGGACAAGGAGCGGGCTGTCAAAATGTGGAGCTTCGGAAAGAGAAGGCTGATTACCTGAGCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtgagcctagtaagtctgagagaaaccttacccatctggtccacagCAAA Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA tgggatgcttaagggtagaacatgattgttgctaattatatgtttaacagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGCAATGTGAACATGGTGGACAAGGAGCGGGCTGTCAAAATGTGGAGCTTCGGAAAGAGAAGGCTGATTACCTGAGCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtgagcctagtaagtctgagagaaaccttacccatctggtccacagCAAA #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAG-TGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAG-TGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGcGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGT-GAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTG-AGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGT-GAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGCGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGAC-CCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagtAAAGTGAAAACTCTGGGAGAAGACGACCCCCTGGCTGGACGATACTGCAGCATGGATAGAGA-GAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGAC-CCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagtAAAGTGAAAACTCTGGGAGAAGACGACCCCCTGGCTGGACGATACTGCAGCATGGATAGAGA-GAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGAC-CCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACcCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGAGC-------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCC-TGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCCCTGGCTGGACGATACTGCAGCATGGATAGAGA-GAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Pairagon ---------------------------------------------------AAAATAAAGACACTGGGGGAGGATGA-CCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG TTAATCTACCCAAGGGTGGGGAAGCTGGTCAAACCTTCCTTTAATTCAAGTAAAGTGAAAACTCTGGGAGAAGACGACCCCCTGGCTGGACGATACTGCAGCATGGATAGAGA-GAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCC---CTGGCTGGACGATACTGCAGCATGGATAGA---GAGAGCCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCC---CTGGCTGGACGATACTGCAGCATGGATAGA---GAGAGCCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGGGAGAAGACGACCCC---CTGGCTGGACGATACTGCAGCATGGATAGA---GAGAGCCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAG-AAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTGTTATAAAACAAGAATTGGAAAGACCTTGTGTGTGCATTTC-CCTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTggtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from CESAR CTTCTAGCCTGTGTTGTAAAG-AAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTGTTATAAAACAAGAATTGGAAAGACCTTGTGTGTGCATTT-CCCTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTggtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAG-AAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTGTTATAAAAcAAGAATTGGAAAGACCTTGTGTGTGCATTTCCCTG----AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAG-AAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTGTTATAAAACAAGAATTGGAAAGACCTTGTGTGTGCAT-TTCCCT---GAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAG-AAGAATTGGAAGGACCTAGTATGTG------CCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTGTTATAAAACAAGAATTGGAAAGACCTTGTGTGTGCATTTCCCT----------GAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTGTTATAAAACAAGAA---TTGGAAAGACCTTGTGTGTGCATTTCCCTGAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTGTTATAAAACAAGAA---TTGGAAAGACCTTGTGTGTGCATTTCCCTGAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tttccatgctatgcaccagcctgagggtagcagaaagttttattttgcagTTCCTGGCCTGTGTTATAAAACAAGAATTG---GAAAGACCTTGTGTGTGCATTTCCCTGAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAAAAGTTCCCTGAACTTTGTGgtaactgtgagattaacatgattcattgtactgatgccaagtagaggcaa #### Sec31b_ID9038_14 --> 2 - 0 Original Alignment acACTGATGGACTCCTG-AGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG tgatttcaggaagcaactgggtgagtgtccctgttctcctctgctttcagatACTGATGGGCTCCTGCAGCCAGGCTTTGCTAATTGGGGAACTGCACT-TGCTGTAGAGCTGTGTTTGAAAGAGGAACGATTTGCAGATGCTGTCATTTTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTGGCCAAGAGGAGAACAAAAACGTCTTCCgtaaatcctgtcatccataattgtggagagggtctgcaagatgccctcac Alignment from CESAR acACTGATGGACTCCTG-AGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG tgatttcaggaagcaactgggtgagtgtccctgttctcctctgctttcagatACTGATGGGCTCCTGCAGCCAGGCTTTGCTAATTGGGGAACTGCAC-TTGCTGTAGAGCTGTGTTTGAAAGAGGAACGATTTGCAGATGCTGTCATTTTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTGGCCAAGAGGAGAACAAAAACGTCTTCCgtaaatcctgtcatccataattgtggagagggtctgcaagatgccctcac Alignment from Spaln_aa2Genome ACACTGATGGACTCCTG-AGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG tgatttcaggaagcaactgggtgagtgtccctgttctcctctgctttcagATACTGATGGGCTCCTGcAGCCAGGCTTTGCTAATTGGGGAACTGCACTT-GCTGTAGAGCTGTGTTTGAAAGAGGAACGATTTGCAGATGCTGTCATTTTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTGGCCAAGAGGAGAACAAAAACGTCTTCCgtaaatcctgtcatccataattgtggagagggtctgcaagatgccctcac Alignment from Spaln_nt2Genome ACACTGATGGACTCCTG-AGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG tgatttcaggaagcaactgggtgagtgtccctgttctcctctgctttcagATACTGATGGGCTCCTGCAGCCAGGCTTTGCTAATTGGGGAACTGCACT-TGCTGTAGAGCTGTGTTTGAAAGAGGAACGATTTGCAGATGCTGTCATTTTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTGGCCAAGAGGAGAACAAAAACGTCTTCCgtaaatcctgtcatccataattgtggagagggtctgcaagatgccctcac Alignment from Pairagon ACACTGATGGACTCCTG-AGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG tgatttcaggaagcaactgggtgagtgtccctgttctcctctgctttcagATACTGATGGGCTCCTGCAGCCAGGCTTTGCTAATTGGGGAACTGCACT-TGCTGTAGAGCTGTGTTTGAAAGAGGAACGATTTGCAGATGCTGTCATTTTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTGGCCAAGAGGAGAACAAAAACGTCTTCCgtaaatcctgtcatccataattgtggagagggtctgcaagatgccctcac Alignment from Exonerate_protein2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG tgatttcaggaagcaactgggtgagtgtccctgttctcctctgctttcagATACTGATGGGCTCCTGCAGCCAGGCTTTGCTAATTGGGGAACTGCACTTGCTGTAGAGCTGTGTTTGAAAGAGGAACGATTTGCAGATGCTGTCATTTTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTGGCCAAGAGGAGAACAAAAACGTCTTCCgtaaatcctgtcatccataattgtggagagggtctgcaagatgccctcac Alignment from Exonerate_coding2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG tgatttcaggaagcaactgggtgagtgtccctgttctcctctgctttcagATACTGATGGGCTCCTGCAGCCAGGCTTTGCTAATTGGGGAACTGCACTTGCTGTAGAGCTGTGTTTGAAAGAGGAACGATTTGCAGATGCTGTCATTTTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTGGCCAAGAGGAGAACAAAAACGTCTTCCgtaaatcctgtcatccataattgtggagagggtctgcaagatgccctcac Alignment from GeneWise ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG tgatttcaggaagcaactgggtgagtgtccctgttctcctctgctttcagATACTGATGGGCTCCTGCAGCCAGGCTTTGCTAATTGGGGAACTGCACTTGCTGTAGAGCTGTGTTTGAAAGAGGAACGATTTGCAGATGCTGTCATTTTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTGGCCAAGAGGAGAACAAAAACGTCTTCCgtaaatcctgtcatccataattgtggagagggtctgcaagatgccctcac #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGG-TGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggttagtgcccctgacatgtgttctctaattctaacattttttctcacagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTG-TGGCTGGATCAGTTTATGTTCTGTGACAGGAAGAAGCTGGGAAGCGCAGCATATGAGGCAGGCTGACGAGgtaggaagcggttgttttaataggggggggacttgcagaaaagtgaactt Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGG-TGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggttagtgcccctgacatgtgttctctaattctaacattttttctcacagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTT-GTGGCTGGATCAGTTTATGTTCTGTGACAGGAAGAAGCTGGGAAGCGCAGCATATGAGGCAGGCTGACGAGgtaggaagcggttgttttaataggggggggacttgcagaaaagtgaactt Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggttagtgcccctgacatgtgttctctaattctaacattttttctcacagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGTGGCTGGATCAGTTTATGTTCTGTGACAGGAAGAAGCTGGGAAGCGCAGCATATGAGGCAGGCTGACGAGgtaggaagcggttgttttaataggggggggacttgcagaaaagtgaactt Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGG-TGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggttagtgcccctgacatgtgttctctaattctaacattttttctcacagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTG-TGGCTGGATCAGTTTATGTTCTGTGACAGGAAGAAGCTGGGAAGCGCAGCATATGAGGCAGGCTGACGAGgtaggaagcggttgttttaataggggggggacttgcagaaaagtgaactt Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGG-TGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggttagtgcccctgacatgtgttctctaattctaacattttttctcacagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTG-TGGCTGGATCAGTTTATGTTCTGTGACAGGAAGAAGCTGGGAAGCGCAGCATATGAGGCAGGCTGACGAGgtaggaagcggttgttttaataggggggggacttgcagaaaagtgaactt Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggttagtgcccctgacatgtgttctctaattctaacattttttctcacagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGTGGCTGGATCAGTTTATGTTCTGTGACAGGAAGAAGCTGGGAAGCGCAGCATATGAGGCAGGCTGACGAGgtaggaagcggttgttttaataggggggggacttgcagaaaagtgaactt Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggttagtgcccctgacatgtgttctctaattctaacattttttctcacagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGTGGCTGGATCAGTTTATGTTCTGTGACAGGAAGAAGCTGGGAAGCGCAGCATATGAGGCAGGCTGACGAGgtaggaagcggttgttttaataggggggggacttgcagaaaagtgaactt Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggttagtgcccctgacatgtgttctctaattctaacattttttctcacagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGCTGCCCTCCCAGCCCTCCAGTACTTTCTGCTGTCTCTTTTGTGGCTGGATCAGTTTATGTTCTGTGACAGGAAGAAGCTGGGAAGCGCAGCATATGAGGCAGGCTGACGAGgtaggaagcggttgttttaataggggggggacttgcagaaaagtgaactt #### Sec31b_ID9047_5 --> 0 - 0 Original Alignment AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCAC-ATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACCATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGG-GTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from CESAR AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCAC-ATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACCATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTG-GGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Spaln_aa2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACCATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Spaln_nt2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCA-CATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACCATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGG-GTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Pairagon AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCA-CATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACCATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGG-GTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Exonerate_protein2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACCATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Exonerate_coding2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACCATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from GeneWise AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACCATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa #### Sec31b_ID9048_4 --> 0 - 0 Original Alignment GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAG-ATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTGACTCTGAGCATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGA-ACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from CESAR GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAG-ATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTGACTCTGAGCATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATG-AACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Spaln_aa2Genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTGACTCTGAGCATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGAACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Spaln_nt2Genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAG-ATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTGACTCTGAGCATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGA-ACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Pairagon GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAG-ATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTGACTCTGAGCATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGA-ACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Exonerate_protein2genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTGACTCTGAGCATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGAACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from Exonerate_coding2genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTGACTCTGAGCATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGAACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg Alignment from GeneWise GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTCATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG tacaagactgcaggctgtctgatttctacagctcttctcttcccccacagGGCAACCTCCTTGCATCAGGCACTAGTGACTCTGAGCATTTTCAATTGGGACTGGAATCACCTGAGTGTCTCAATGAACCAGGACCCAAGTCACAGgtcagtagctcactactaccctttccctagggtaggccatctaggaaggg #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAG-GGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagagGTATCACAAGTGCAACACTTTAGGCGGGCAGGCCCAAAATTATTCAACATTGCTGTTGGAGG-GGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAG-GGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagagGTATCACAAGTGCAACACTTTAGGCGGGCAGGCCCAAAATTATTCAACATTGCTGTTGGAG-GGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGCGGGCAGGCCCAAAATTATTCAACATTGCTGTTGGAGGGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAG-GGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGCGGGCAGGCCCAAAATTATTCAACATTGCTGTTGGAGG-GGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagaggtatcacaagtgcaacactttaggcgggcag--------------------------------GCCCAAAATTATTCAACATTGCTGTTGGAGG-GGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGCGGGCAGGCCCAAAATTATTCAACATTGCTGTTGGAGGGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Exonerate_coding2genome gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagaggtatcacaagtgcaacactttaggcgggcaggcccaaaattattcaacattgctgttggaggggcttctgaaaagctgctggcaggggctcgaggtccattgttctccctcagtgcacgtgaaatcagagagaggacacataaagaggtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGCGGGCAGGCCCAAAATTATTCAACATTGCTGTTGGAGGGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGG-GGCACCGATGCACTGGCTCAATggtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAG-GGGCACCGATGCACTGGCTCAATggtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATcATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGG-GCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGG-GGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGG-GGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAG--GAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGG---GCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGAT-ATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAG--GAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGG---GCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATCATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGT-GAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagatGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATCGAGGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCC-CCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGT-GAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagatGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATCGAGGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGC-CCCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGT-GAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATcGAGGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCC-CGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGT-GAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATCGAGGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCC-CCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGT-GAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATCGAGGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCC-CCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATCGAGGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCCCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATCGAGGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCCCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATCGAGGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCCCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAG-AAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCT-CCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAG-AAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCCTTCCTGAAGGCTCGACTCATC-TCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAG-AAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGcAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTC-CATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAG-AAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCT-CCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAG-AAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCT-CCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGCAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTG-AAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCTGCTGCTGCAAGCGCAATGTACGCTACACACATGTCACAG-TACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAggtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTG-AAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCTGCTGCTGCAAGCGCAATGTACGCTACACACATGTCACA-GTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAggtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCTGCTGCTGCAAGCGCAATGTACGCTACACACATGTCACAGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCC---TGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGA-AGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCTGCTGCTGCAAGCGCAATGTACGCTACACACATGTCACA-GTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTG-AAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCTGCTGCTGCAAGCGCAATGTACGCTACACACATGTCACA-GTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCTGCTGCTGCAAGCGCAATGTACGCTACACACATGTCACAGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCTGCTGCTGCAAGCGCAATGTACGCTACACACATGTCACAGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCTGCTGCTGCAAGCGCAATGTACGCTACACACATGTCACAGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACCGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGT-CATGGTGGCCACCACAGTAGCAAACaggtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACCGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTG-TCATGGTGGCCACCACAGTAGCAAACaggtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACCGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTCATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGA---ATTCAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACCGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGT-CATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAA---TTCAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACCGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGT-CATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCAT--GCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACCGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTC---ATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCAT--GCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACCGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTC---ATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTG-GCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGC tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACCGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTgtcatggtggccaccacagtagcaaacaggtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAG-CCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGC-CCATGGCCCTCCTCCAATGggtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAG-CCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGG-CCCATGGCCCTCCTCCAATGggtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAG-CCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGcCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCC-CATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGC-CACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGC-CCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAG-CCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGC-CCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAG-CCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGG--CACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCC---CATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAG-CCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGG--CACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCC---CATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCCCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacatgatgacacctaagtccttccctctttcctgccagAAGAAGAAGCCAGAGGCCCCCAAACCTATCACGAAAGAAGTTGCGCCGAATGAATC-ATTTACTGTGGCAGAATTGAAGCAGgtaaggtctgggaaggtcaagccagctactccagttctgttcatcattca Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacatgatgacacctaagtccttccctctttcctgccagAAGAAGAAGCCAGAGGCCCCCAAACCTATCACGAAAGAAGTTGCGCCGAATGAATC-ATTTACTGTGGCAGAATTGAAGCAGgtaaggtctgggaaggtcaagccagctactccagttctgttcatcattca Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacatgatgacacctaagtccttccctctttcctgccagAAGAAGAAGCCAGAGGCCCCCAAAcCTATCACGAAAGAAGTTGCGCCGAATGAATCA-TTTACTGTGGCAGAATTGAAGCAGgtaaggtctgggaaggtcaagccagctactccagttctgttcatcattca Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAAC-TGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacatgatgacacctaagtccttccctctttcctgccagAAGAAGAAGCCAGAGGCCCCCAAACCTATCACGAAAGAAGTTGCGCCGAATGAATC-ATTTACTGTGGCAGAATTGAAGCAGgtaaggtctgggaaggtcaagccagctactccagttctgttcatcattca Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAA-CTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacatgatgacacctaagtccttccctctttcctgccagAAGAAGAAGCCAGAGGCCCCCAAACCTATCACGAAAGAAGTTGCGCCGAATGAATCA-TTTACTGTGGCAGAATTGAAGCAGgtaaggtctgggaaggtcaagccagctactccagttctgttcatcattca Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacatgatgacacctaagtccttccctctttcctgccagAAGAAGAAGCCAGAGGCCCCCAAACCTATCACGAAAGAAGTTGCGCCGAATGAATCATTTACTGTGGCAGAATTGAAGCAGgtaaggtctgggaaggtcaagccagctactccagttctgttcatcattca Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacatgatgacacctaagtccttccctctttcctgccagAAGAAGAAGCCAGAGGCCCCCAAACCTATCACGAAAGAAGTTGCGCCGAATGAATCATTTACTGTGGCAGAATTGAAGCAGgtaaggtctgggaaggtcaagccagctactccagttctgttcatcattca Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG tcaggctgcatcacatgatgacacctaagtccttccctctttcctgccagAAGAAGAAGCCAGAGGCCCCCAAACCTATCACGAAAGAAGTTGCGCCGAATGAATCATTTACTGTGGCAGAATTGAAGCAGgtaaggtctgggaaggtcaagccagctactccagttctgttcatcattca #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagagAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGA-TGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from CESAR agGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagagAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAG-ATGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Spaln_aa2Genome GGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagagAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGAT-GAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGAT-ACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGA-TGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Pairagon AGGAGGAGGAAATGGAGACA-GATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgcagAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGA-TGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Exonerate_protein2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgCAGAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGATGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from Exonerate_coding2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagatgacttcttcctctctgCAGAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGATGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt Alignment from GeneWise -----------------CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttttaatagttaaaaaaggtcagATGACTTCTTCCTCTCTGCAGAGAAAGAAGAAATGGAGACACGTCACTCGCTCATCTCTGGGACCATCTGCATCAGAGATGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtaagaatttagaaagagtaaggccacttttctgtgagcttcttggttgt #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCC-CAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTC-GCAGCAAGAGATGAACTCTCAG---ggtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCC-CAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTC-GCAGCAAGAGATGAACTCT---CAGggtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCC-CAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTcCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCG-CAGCAAGAGATGAACTCTCAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGAT-CCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagAT---TGACCCCTCAGTGGGCCCCAAGATCCCTCCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCG-CAGCAAGAGATGAACTCT---CAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCC-CCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagAT---TGACCCCTCAGTGGGCCCCAAGATCCCTCCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTC-GCAGCAAGAGATGAACTCT---CAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGC tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCGCAGCAAGAGATGAACTCTCAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGC tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCGCAGCAAGAGATGAACTCTCAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATTGAC---CCCTCAGTGGGCCCCAAGATCCCTCCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCGCAGCAAGAGATGAACTCT---CAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcaggCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAA-GTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcaggCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGAC-TAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTcGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGC---CACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGT--CGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACT-AAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cagcccaaaattgaaaggctactacagaactccctccttctcatttgcagGCAGTTAGGGACAGCCTATGTGAGTCGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAGTCTCTGACCAAGgtaagttctccctcctcctttccagaattatatgtcccatgtcttcatga #### Shoc2_ID11421_7 --> 0 - 1 Original Alignment AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAAC-CTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCCTCACCCACCTTGGTCTTGGCGAGAACCTGC-CACTCACCTTCCTGAAGAAATTggtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from CESAR AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAAC-CTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCCTCACCCACCTTGGTCTTGGCGAGAACCTG-CCACTCACCTTCCTGAAGAAATTggtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Spaln_aa2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCCTCACCCACCTTGGTCTTGGCGAGAACCTGCCACTCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Spaln_nt2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAAC-CTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCCTCACCCACCTTGGTCTTGGCGAGAACCTGC-CACTCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Pairagon AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAA-CCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCCTCACCCACCTTGGTCTTGGCGAGAACCTGC-CACTCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Exonerate_protein2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCCTCACCCACCTTGGTCTTGGCGAGAACCTGCCACTCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from Exonerate_coding2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAA---CCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACT--AACCCTCACCCACCTTGGTCTTGGCGAGAACCTGCC-ACTCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc Alignment from GeneWise AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatatatgtctgtctctcttaattttttttaaagAAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGTCACCTCACTAACCCTCACCCACCTTGGTCTTGGCGAGAACCTGCCACTCACCTTCCTGAAGAAATTGgtgagaactgggatgccatccatagatttagtatatctcacattgactcc #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGG-AGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacaggCCA---CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCA-GCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacaggCCA--CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCC-AGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacAGGCCACCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCAG-CTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Spaln_nt2Genome GCCAGAACCCGGG-AGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCC---ACCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCA-GCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Pairagon GCCAGAACCCGGG-AGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCC---ACCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCA-GCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCCA---CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCAGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from Exonerate_coding2genome cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacaggccacctgggcagcctatcagaaaagatctctcatctagagtccagctctggaaattgcaagaggactcgcagagggtgagttgcctacctgggaagggtatacagggctgccatgggacacggga Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cccaattttctgttgggtgtggcatcctcaaatccacttcgttttcacagGCCA---CCTGGGCAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCAGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgagttgcctacctgggaagggtatacagggctgccatgggacacggga #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAG-TCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg g aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagttATGCCAGAAGCTGCGACTGAAACCTTGGAT---GAATGGCAGCTCCATCTCAGAAATCACCTCCACTTGCAACACAA-TTTGGAGTCCCTGTCTCGGGAAggtaagtgtgccagttggatattagccaacctgcctgatctacatttcagg Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAG-TCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg g aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagttATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGCTCCATCTCAGAAATCACCTCCACTTGCAACACAA-TTTGGAGTCCCTGTCTCGGGAAggtaagtgtgccagttggatattagccatttctgttgctgccttgtgtagg Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGCTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccaacctgcctgatctacatttcagG Alignment from Spaln_nt2Genome GTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagttatgccagaagctgcgactgaaaccttggatgaatggcagCTCCATCTCAGAAATCACCTCCACTTGCAACACAATT-TGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccaacctgcctgatctacatttcagG Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAG-TCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTT---GGATGAATGGCAGCTCCATCTCAGAAATCACCTCCACTTGCAACACAATT-TGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccaacctgcctgatctacatttcagG Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGCTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccaacctgcctgatctacatttcagG Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTTGGATGAA--TGGCAGCTCCATCTCAGAAATCACCTCCACTTGCAACACAAT-TTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccaacctgcctgatctacatttcagG Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacacagttatcttcagcctttaaggtttctgggtctgtttcagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGCTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTGGAGTCCCTGTCTCGGGAAGgtaagtgtgccagttggatattagccaacctgcctgatctacatttcagG #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGCAAGGCTTCCATCCTGCCCAGAACCTTATCGG-ACGGAATTCCATCAGTAAAagtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGCAAGGCTTCCATCCTGCCCAGAACCTTATCG-GACGGAATTCCATCAGTAAAagtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGcAAGGCTTCCATCCTGCCCAGAACCTTATCGGA-CGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGCAAGGCTTCCATCCTGCCCAGAACCTTATC-GGACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTG-AGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGCAAGGCTTCCATCCTGCCCAGAACCTTATC-GGACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGCAAGGCTTCCATCCTGCCCAGAACCTTATCGGACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGCAAGGCTTCCATCCTGCCCAGAACCTTATCGGACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGCAAGGCTTCCATCCTGCCCAGAACCTTATCGGACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACT-CCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagcTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCCAGATCTCCTACTTATTACAACAGCTA-CACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtcacttacctctcctc Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACT-CCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagcTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCCAGATCTCCTACTTATTACAACAGCTACA-CTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctcttttctttatcc Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCCAGATCTCCTACTTATTACAACAGCTACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtcacttacctctcctc Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCC-AGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCCAGATCTCCTACTTATTACAACAG-CTACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtcacttacctctcctc Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCAC-TCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCCAGATCTCCTACTTATTACAACAGCT-ACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtcacttacctctcctc Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCCAGATCTCCTACTTATTACAACAGCTACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtcacttacctctcctc Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCCAGATCTCCTACTTATTACAACAGCTACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtcacttacctctcctc Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCCAGATCTCCTACTTATTACAACAGCTACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGGTAGGTTGTCAAGTTAACATTGAGTGCCATACTGTCACTTACCTCTCCTC #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACC-ATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCT-CTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACaggtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACC-ATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCCATTGTGTTCCAAGAGCCCGGCAGCAAGC-CCTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACaggtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACC-ATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCCATTGTGTTCCAAGAGCCCGGCAGCAAGCCC-TCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGA-CCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCCATTGTGTTCCAAGAGCCCGGCAGCAAGCCC-TCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATC-ATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCCATGTTTCACGTGTCCACGATGTTGCCTTACA-ACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATC-ATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCCATGTTTCACGTGTCCACGATGTTGCCTTAC-AACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATC-ATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCcATGTTTCACGTGTCCACGATGTTGCCTTACAA-CCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGAT-CATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCCATGTTTCACGTGTCCACGATGTTGCCTTACA-ACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGAT-CATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCCATGTTTCACGTGTCCACGATGTTGCCTTACA-ACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCCATGTTTCACGTGTCCACGATGTTGCCTTACAACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCCATGTTTCACGTGTCCACGATGTTGCCTTACAACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG------CTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATC------CATGTTTCACGTGTCCACGATGTTGCCTTACAACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAG-GCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagaaCACCAAAACTTCTTTGGACTAGATGAGCGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAA-GGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatgttcccacccgtcctcccg Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAG-GCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagaaCACCAAAACTTCTTTGGACTAGATGAGCGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGG-AAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatcactgatgatgtgttttta Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGCGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatgttcccacccgtcctcccg Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAG-GCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGCGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGA-AAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatgttcccacccgtcctcccg Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAG-GCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGCGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGA-AAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatgttcccacccgtcctcccg Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGCGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatgttcccacccgtcctcccg Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGCGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatgttcccacccgtcctcccg Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaacaaaccaacaacagtgtcttttcacactttgccagAACACCAAAACTTCTTTGGACTAGATGAGCGCACTAGGCCCTGTGGCTTTGAGTCTCCAACGGGAGGAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTTCGAGTCATTGTGCGAACCATGCAGgtaagtgacatcactgggtgcaatagcctatgttcccacccgtcctcccg #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTCCAA-GGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAACGGTCTACACCTCCATATCCCAAACATCTTCAGGA-TAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from CESAR ATGCAGTCCACCTATGTCCTCCAA-GGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAACGGTCTACACCTCCATATCCCAAACATCTTCAGG-ATAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAACGGTCTACACCTCCATATCCCAAACATCTTCAGGATAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCCAA-GGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAACGGTCTACACCTCCATATCCCAAACATCTTCAGGA-TAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Pairagon ATGCAGTCCACCTATGTCCTCCAA-GGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAACGGTCTACACCTCCATATCCCAAACATCTTCAGGA-TAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAACGGTCTACACCTCCATATCCCAAACATCTTCAGGATAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAACGGTCTACACCTCCATATCCCAAACATCTTCAGGATAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGC-TATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagtgTTTGCATACTCTAGTAGTCTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTG-TTCATCCTGCTCATCTGTGGCTggtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from CESAR tgTTTGCCTTCTCCAGCAGC-TATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagtgTTTGCATACTCTAGTAGTCTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATT-GTTCATCCTGCTCATCTGTGGCTggtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGC-TATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTcTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTGT-TCATCCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAG-CTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTCTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAAT-TGTTCATCCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Pairagon TGTTTGCCTTCTCCAGCAG-CTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTCTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATT-GTTCATCCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTCTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTGTTCATCCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagTGTTTGCATACTCTAGTAGTCTATGCCTTTCTCCTGATAGCCAAGTCACTGCAGGGAATTGTTCATCCTGCTCATCTGTGGCTGgtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat Alignment from GeneWise cacaaagccaggttcatgtagaggaccatgtgctttttgttgtattttagtgtttgcatactctagtagtctatgcctttctcctgatagccaagtcactgcagggaattgttcatcctgctcatctgtggctggtaaatctaaaattcagtgcttgatatatgtaccaaggactcatatgtat #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCT-GGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGC-CCACCGAAGCATTATCTCTATGCTGTGCctgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCT-GGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTG-CCCACCGAAGCATTATCTCTATGCTGTGCctgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCT-GGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCcGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCC-CACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCT-GGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGC-CCACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAG-CTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGC-CCACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCT-GGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTG--CGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCC---CACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCCCACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGC-TATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctcctctctttgattgtttttttttcaggTTCGGATGCAGAAGGGTACTGACCTGGAGCCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTG-TTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTtgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctccgttc Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGC-TATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctcctctctttgattgtttttttttcaggTTCGGATGCAGAAGGGTACTGACCTGGAGCCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCT-GTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTtgtcggtcccactcctagtgtgatgttgtaaggctactgcggctgtgtgga Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctccgttc Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGC-TATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTG-TTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctccgttc Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAG-CTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTG-TTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctccgttc Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctccgttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctccgttc #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCT-AAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagtgTTAGAATGGACAAGCCCTCAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCC-TCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAaggtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from CESAR tgTTAGAATGGACAAGCCCT-AAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagtgTTAGAATGGACAAGCCCTCAAAACCCAAGCCTTGGTGACCACGCTGTCAATGA-GCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAaggtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCT-AAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTcAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCT-CATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Spaln_nt2Genome TGTTAGAATGGACAAG-CCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTCAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAG-CCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Pairagon TGTTAGAATGGACAAGCCCT-AAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTCAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAG-CCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTCAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTCAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTCAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCC-CAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATG---ATGTTTGGCTACCTGGCGGACag agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCCAGTCACTATTCATGGTAGGAGTG---TTCG-TGCCATGATGTTGTTTGGTTACCTTGCAGATaggtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCC-CAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCCAGTCACTATTCATGGTAGGAGTGTTCGTG-CCATGATGTTGTTTGGTTACCTTGCAGATaggtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCCAGTCACTATTCATGGTAGGAGTGTTCGTGCCATGATGTTGTTTGGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCC-AGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCCAGTCACTATTCATGGTAGGAGTGTTCGTGCCA-TGATGTTGTTTGGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGG-CCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGA---TGTTTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCCAGTCACTATTCATGGTAGGAGTGTTCGT----GCCATGATGTTGTTTGGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCCAGTCACTATTCATGGTAGGAGTGTTCGTGCCATGATGTTGTTTGGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from Exonerate_coding2genome agccactaaaattgacaaatttcagatctcacccctctctctgtccacagtggaacctttgctcacatagagcctttcaccgattggccccagtcactattcatggtaggagtgttcgtgccatgatgttgtttggttaccttgcagataggtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG agccactaaaattgacaaatttcagatctcacccctctctctgtccacagTGGAACCTT---TGCTCACATAGAGCCTTTCACCGATTGGCCCCAGTCACTATTCATGGTAGGAGTGTTCGTGCCATGATGTTGTTTGGTTACCTTGCAGATAGgtgagacatcagtactgaaagtgcctcatttgtacctaatagttttaaga #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTA-TTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagaaATGGAGATAGTGAGGACAGCACTGGCTGTACTTTGGTATGGGATGCTTATCCGGCTCCTTCAGCT-CCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCaggtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTA-TTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagaaATGGAGATAGTGAGGACAGCACTGGCTGTACTTTGGTATGGGATGCTTATCCGGCTCCTTCAGC-TCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCaggtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTACTTTGGTATGGGATGCTTATCCGGCTCCTTCAGCTCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTG-GGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTACTTTGGTATGGGATGCTTATCCGGCTCCTTCAGCT-CCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTA-TTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTACTTTGGTATGGGATGCTTATCCGGCTCCTTCAGCT-CCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTACTTTGGTATGGGATGCTTATCCGGCTCCTTCAGCTCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTACTTTGGTATGGGATGCTTATCCGGCTCCTTCAGCTCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTACTTTGGTATGGGATGCTTATCCGGCTCCTTCAGCTCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTT-GGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcaggCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTCGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCT-TCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACtggtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTT-GGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcaggCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTCGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCT-TCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACtggtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTT-GGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTcGGTACCATG---CTACTAGGAGGCAGTGCTGCATTCTT-CTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGG-ACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTCGGTACCATG---CTACTAGGAGGCAGTGCTGCATTC-TTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGG-ACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTTCGGTACCATG---CTACTAGGAGGCAGTGCTGCATTC-TTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTT---CGGTACCATGCTACTAGGAGGCAGTGCTGCATTCTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTT--CGGTACCATGCTACTAGGAGGCAGTGCTGCATTCTT-CTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtacgcgctggactgtcgttgttgttgttttgtttgcagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGTCCTTCATTCCTAACGTCATCTTT---CGGTACCATGCTACTAGGAGGCAGTGCTGCATTCTTCTACTTGAGACCCTAAATCGATCTCTACCAGAGACCATCAAGGACATACAAGACTGgtaacaccttaacttttgttacacatggttaagctaacaggctaggttgc #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCC-CAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCCGGCCTCCAAGCCACACAAATATCTTTATAG-AGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGA-CGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCCGGCCTCCAAGCCACACAAATATCTTTATA-GAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCCGGCCTCCAAGCCACACAAATATCTTTATAGAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGG-CCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCCGGCCTCCAAGCCACACAAATATCTTTATAG-AGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGG-CCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCCGGCCTCCAAGCCACACAAATATCTTTATAG-AGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCCGGCCTCCAAGCCACACAAATATCTTTATAGAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Exonerate_coding2genome CGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCAGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ACCTAAGTTTTGCTAATGTTTTTATACAAACTGGCCCTTATACTTTGCAGGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCCGGCCTCCAAGCCACACAAATATCTTTATAGAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCCGGCCTCCAAGCCACACAAATATCTTTATAGAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa #### Slc25a45_ID1294_5 --> 0 - 1 Original Alignment GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGT-GCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCa attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCC-GGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCagtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from CESAR GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGT-GCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCa attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGTCCTGAGAGAGGAAGGACCC-CGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCagtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Spaln_aa2Genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Spaln_nt2Genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGT-GCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGTCCTGAGAGAGGAAGGA-CCCCGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Pairagon GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTG-TGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCC-GGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Exonerate_protein2genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Exonerate_coding2genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from GeneWise GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGC-TTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagcTACCACTTGGCTGGCATCAGCCTTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGA-TTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from CESAR cTACCACCTGGTTGGGATCAGC-TTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagcTACCACTTGGCTGGCATCAGCCTTTTTCATCCTGGGACTAGGCACCCTTCTCCCCT-GGATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGC-TTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagCTACCACTTGGCTGGCATCAGCcTTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTG-GATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGC-TTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagCTACCACTTGGCTGGCATCAGCCTTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGG-ATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Pairagon CTACCACCTGGTTGGGATCAG-CTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagCTACCACTTGGCTGGCATCAGCCTTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGG-ATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttcctctagCTACCACTTGGCTGGCATCAGCCTTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from Exonerate_coding2genome GACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtaacttgtttctgctttccTCTAGCTACCACTTGGCTGGCATCAGCCTTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat Alignment from GeneWise GCGCGGGGAAACGCC------CCTCGGGACAGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtAGGAAAGGTAACTTGTTTCTGCTTTCCTCTAGCTACCACTTGGCTGGCATCAGCCTTTTTCATCCTGGGACTAGGCACCCTTCTCCCCTGGATTTCTTCATTACTGCAATCCCGgtgagttagggtcactgtgcattataaatgctataaaccaatccccctat #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTG-TCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTACTCCCAGTTGCCTCTACTGCTGTTCACACTGC-CAACTCCTTCCTGTATCAGtggcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTG-TCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTACTCCCAGTTGCCTCTACTGCTGTTCACACTG-CCAACTCCTTCCTGTATCAGtggcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTG-TCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTAcTCCCAGTTGCCTCTACTGCTGTTCACACTGCC-AACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Spaln_nt2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTG-TCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTACTCCCAGTTGCCTCTACTGCTGTTCACACTGC-CAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTG-TCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTACTCCCAGTTGCCTCTACTGCTGTTCACACTGC-CAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTACTCCCAGTTGCCTCTACTGCTGTTCACACTGCCAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Exonerate_coding2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTACTCCCAGTTGCCTCTACTGCTGTTCACACTGCCAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCA cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTACTCCCAGTTGCCTCTACTGCTGTTCACACTGCCAACTCCTTCCTGTATCAgtggcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAG-ACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacaggtGGTGTGGATGCCCAACACCTCTGCTCTGGGATACTTCATCACACCCTGTG-GGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from CESAR gtGGCGTGGATGCCCAG-ACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacaggtGGTGTGGATGCCCAACACCTCTGCTCTGGGATACTTCATCACACCCTGT-GGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAG-ACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAAcACCTCTGCTCTGGGATACTTCATCACACCCTGTGG-GGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAG-ACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAACACCTCTGCTCTGGGATACTTCATCACACCCTGTGG-GGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Pairagon GTGGCGTGGATGCCCAG-ACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAACACCTCTGCTCTGGGATACTTCATCACACCCTGTG-GGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAACACCTCTGCTCTGGGATACTTCATCACACCCTGTGGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAACACCTCTGCTCTGGGATACTTCATCACACCCTGTGGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG acaaacaaatccggaattgggagacttggaccgccgcatcatcgccacagGTGGTGTGGATGCCCAACACCTCTGCTCTGGGATACTTCATCACACCCTGTGGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCTTGCCTCACCTGgtgtgttgctgtatagtttatgttatgctatgcaccacttgaacataaaa #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTC-ACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCA-GGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtgggcactggtgatagttcacagcatggaacaggggagccagccacctg Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTC-ACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCC-AGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtgggcactggtgatagttcacagcatggaacaggggagccagacttaag Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCAGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagccacctg Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGT-CACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCA-GGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagccacctg Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGT-CACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCA-GGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagccacctg Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCAGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagccacctg Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCAGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagccacctg Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTACACCCTATCTGTTTTTCCTGCTATCACAGCCAGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagccacctg #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATC-TGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttaggtCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGG-CCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from CESAR gtCTGTTCTTCAACCCTATC-TGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttaggtCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGT-TGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATC-TGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCcTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTT-GGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTAT-CTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTT-GGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Pairagon GTCTGTTCTTCAACCCTAT-CTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTT-GGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATC-TGTTGCTTTCTGCTCTTCAACGTCATGGATTGG--CTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTT---GGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATC-TGTTGCTTTCTGCTCTTCAACGTCATGGATTGG--CTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTT---GGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGTTGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTTACATCCCAAGACCTGTAAGTC-TAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTTACATCCCAAGACCTGTAAGTC-TAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAAcTCAAGCATCTTTTACATCCCAAGACCTGTAAGTCT-AACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTTACATCCCAAGACCTGTAAGTCT-AACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAG-TCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTTACATCCCAAGACCTGTAAGTCT-AACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAACTCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTT-CTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtgggtcagggggggccagtgtcatctgatgttttgtgttacagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAG-GACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgcaagtgcccactcattgtgttgcatggaaacaatgtgttatgttatgca Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTT-CTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtgggtcagggggggccagtgtcatctgatgttttgtgttacagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAG-GACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgcaagtgcccactcattgtgttgcatggaaacaatgtgttatgttatgca Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTT-CTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtgggtcagggggggccagtgtcatctgatgttttgtgttacagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCcCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGACTCCC-GTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgcaagtgcccactcattgtgttgcatggaaacaatgtgttatgttatgca Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTC-TCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtgggtcagggggggccagtgtcatctgatgttttgtgttacagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCA-GGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgcaagtgcccactcattgtgttgcatggaaacaatgtgttatgttatgca Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCT-TCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtgggtcagggggggccagtgtcatctgatgttttgtgttacagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCA-GGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgcaagtgcccactcattgtgttgcatggaaacaatgtgttatgttatgca Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTT-CTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGG--ACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtgggtcagggggggccagtgtcatctgatgttttgtgttacagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGACT---CCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgcaagtgcccactcattgtgttgcatggaaacaatgtgttatgttatgca Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTT-CTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGG--ACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtgggtcagggggggccagtgtcatctgatgttttgtgttacagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGACT---CCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgcaagtgcccactcattgtgttgcatggaaacaatgtgttatgttatgca Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG------------------------------------------ gtaagtgtgggtcagggggggccagtgtcatctgatgttttgtgttacagGTGTCACAGGCAGGACTTCTTGCAGACTTCATACCAGACCATCTCCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAGCAAGTGCCCACTCATTGTGTTGCATGGAAACAATGTGTTATgttatgca #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGC-TCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagaCTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAG-GTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGC-TCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagaCTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACA-GGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAG-CTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAG-GTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAG-CTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAG-GTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGC-TCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACT--GAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGG---TCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGC-TCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACT--GAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGG---TCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGC-TCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGG-TCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg #### Slit1_ID8230_9 --> 2 - 2 Original Alignment gcCAGGGGGAGGCTGCGGGA-GCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGat aacacttaatctgtttataatctggatactgtcttcattctcatcatcaggcCAGGGGAGGGCGGCAGGACGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAA-CATGTGTAGCTGTAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCAGAGACTATGACAGAGgtgtgagaaaaaagccaggcaagctattctagtcagtggcacaccactattg Alignment from CESAR gcCAGGGGGAGGCTGCGGGA-GCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGat aacacttaatctgtttataatctggatactgtcttcattctcatcatcaggcCAGGGGAGGGCGGCAGGACGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCA-ACATGTGTAGCTGTAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCAGAGACTATGACAGAGgtgtgagaaaaaagccaggcaagctattctagtcagtggcacaccactattg Alignment from Spaln_aa2Genome GCCAGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT aacacttaatctgtttataatctggatactgtcttcattctcatcatcagGCCAGGGGAGGGCGGCAGGACGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAACATGTGTAGCTGTAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCAGAGACTATGACAGAGGTgtgagaaaaaagccaggcaagctattctagtcagtggcacaccactattg Alignment from Spaln_nt2Genome GCCAGGGGGAGGCTGCGGGA-GCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT aacacttaatctgtttataatctggatactgtcttcattctcatcatcagGCCAGGGGAGGGCGGCAGGACGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCA-ACATGTGTAGCTGTAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCAGAGACTATGACAGAGGTgtgagaaaaaagccaggcaagctattctagtcagtggcacaccactattg Alignment from Pairagon GCCAGGGGGAGGCTGCGGGA-GCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT aacacttaatctgtttataatctggatactgtcttcattctcatcatcagGCCAGGGGAGGGCGGCAGGACGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAA-CATGTGTAGCTGTAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCAGAGACTATGACAGAGGTgtgagaaaaaagccaggcaagctattctagtcagtggcacaccactattg Alignment from Exonerate_protein2genome GCCAGGGGGAGGCTGCGGGA-GCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCA--GCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT aacacttaatctgtttataatctggatactgtcttcattctcatcatcagGCCAGGGGAGGGCGGCAGGACGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAAC---ATGTGTAGCTGTAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCAGAGACTATGACAGAGGTgtgagaaaaaagccaggcaagctattctagtcagtggcacaccactattg Alignment from Exonerate_coding2genome GCCAGGGGGAGGCTGCGGGA-GCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCA--GCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT aacacttaatctgtttataatctggatactgtcttcattctcatcatcagGCCAGGGGAGGGCGGCAGGACGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAAC---ATGTGTAGCTGTAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCAGAGACTATGACAGAGGTgtgagaaaaaagccaggcaagctattctagtcagtggcacaccactattg Alignment from GeneWise ----GAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAGCAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACAGAGAT aacacttaatctgtttataatctggatactgtcttcattctcatcatcaggccagGGGAGGGCGGCAGGACGCACCTACTTGCACCCTCTCATCAGGTTCCTGCCCAAC-ATGTGTAGCTGTAGCAGCAGCATTTTGGACTGTCGTGGCAAGGGCCTTACTGCCATCCCTGCCAACCTTCCAGAGACTATGACAGAGGTgtgagaaaaaagccaggcaagctattctagtcagtggcacaccactattg #### Slit1_ID8231_8 --> 1 - 1 Original Alignment cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAG-TGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg caagatcctttctgtgagccccaagaataaattgtgattgattctttcagcCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACCGTTGGCCTATTTACCCAGCTGCTCAGGGCCGGTCAGCCTTCGGGGCCTCA-TGTGACAGAAGTGCAAAAGGGTGAATTTAGCTGCTCAggtgagagcttgtctcatctggcttcccctactaagtttttcttttccggt Alignment from CESAR cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAG-TGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg caagatcctttctgtgagccccaagaataaattgtgattgattctttcagcCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACCGTTGGCCTATTTACCCAGCTGCTCAGGGCCGGTCAGCCTTCGGGGCCTC-ATGTGACAGAAGTGCAAAAGGGTGAATTTAGCTGCTCAggtgagagcttgtctcatctggcttcccctactaagtttttcttttccggt Alignment from Spaln_aa2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttctgtgagccccaagaataaattgtgattgattctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACCGTTGGCCTATTTACCCAGCTGCTCAGGGCCGGTCAGCCTTCGGGGCCTCATGTGACAGAAGTGCAAAAGGGTGAATTTAGCTGCTCAGgtgagagcttgtctcatctggcttcccctactaagtttttcttttccggt Alignment from Spaln_nt2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAG-TGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttctgtgagccccaagaataaattgtgattgattctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACCGTTGGCCTATTTACCCAGCTGCTCAGGGCCGGTCAGCCTTCGGGGCCTC-ATGTGACAGAAGTGCAAAAGGGTGAATTTAGCTGCTCAGgtgagagcttgtctcatctggcttcccctactaagtttttcttttccggt Alignment from Pairagon CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAG-TGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttctgtgagccccaagaataaattgtgattgattctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACCGTTGGCCTATTTACCCAGCTGCTCAGGGCCGGTCAGCCTTCGGGGCCTC-ATGTGACAGAAGTGCAAAAGGGTGAATTTAGCTGCTCAGgtgagagcttgtctcatctggcttcccctactaagtttttcttttccggt Alignment from Exonerate_protein2genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttctgtgagccccaagaataaattgtgattgattctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACCGTTGGCCTATTTACCCAGCTGCTCAGGGCCGGTCAGCCTTCGGGGCCTCATGTGACAGAAGTGCAAAAGGGTGAATTTAGCTGCTCAGgtgagagcttgtctcatctggcttcccctactaagtttttcttttccggt Alignment from Exonerate_coding2genome TCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTTC---CGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagATCCTTTCTGTGAGCCCCAAGAATAAATTGTGATTGATTCTTTCAGCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACCGTTGGCCTATTTACCCAGCTGCTCAGGGCCGGTCAGCCTTCGGGGCCTCATGTGACAGAAGTGCAAAAGGGTGAATTTAGCTGCTCAGgtgagagcttgtctcatctggcttcccctactaagtttttcttttccggt Alignment from GeneWise CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttctgtgagccccaagaataaattgtgattgattctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACCGTTGGCCTATTTACCCAGCTGCTCAGGGCCGGTCAGCCTTCGGGGCCTCATGTGACAGAAGTGCAAAAGGGTGAATTTAGCTGCTCAGgtgagagcttgtctcatctggcttcccctactaagtttttcttttccggt #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcCCACTCAATAATAATCAACATCAGCGCTATCCCC------CGTTTCAATCATATCC-TAAGCTCCACACTttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from CESAR gACCCTGAACAACAAC-AACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcCCACTCAATAATAATCAACATCAGCGCTATCCCC------CGTTTCAATCATA-TCCTAAGCTCCACACTttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagCCCACTCAATAATAATCAACATCAGCGCTATCCC------CCGTTTCAATCATATCCTAAGCTCCACACTTTgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Spaln_nt2Genome GACCCTGAACAACAA-CAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagCCCACTCAATAATAATCAACATCAGCGCTATCC------CCCGTTTCAATCATAT-CCTAAGCTCCACACTTTgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Pairagon cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcccactcaataataatcaacatcagcgctatcccccgtttcaatcatatcctaagctccacactttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Exonerate_protein2genome cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcccactcaataataatcaacatcagcgctatcccccgtttcaatcatatcctaagctccacactttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Exonerate_coding2genome cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcccactcaataataatcaacatcagcgctatcccccgtttcaatcatatcctaagctccacactttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from GeneWise cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcccactcaataataatcaacatcagcgctatcccccgtttcaatcatatcctaagctccacactttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta #### Slk_ID10264_16 --> 0 - 0 Original Alignment GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAG-GAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgagcataaaattagttcccagtctaaaattccttttgttttagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGCTGAAAAATAGAGAGACTCAACGAGAGAGCACGACTGGCCAAAATTCAAAGAA-TGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtgggtgacagttcaatttctttacctcaatttaagacgtatgttgaaac Alignment from CESAR GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAG-GAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgagcataaaattagttcccagtctaaaattccttttgttttagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGCTGAAAAATAGAGAGACTCAACGAGAGAGCACGACTGGCCAAAATTCAAA-GAATGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtgggtgacagttcaatttctttacctcaatttaagacgtatgttgaaac Alignment from Spaln_aa2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgagcataaaattagttcccagtctaaaattccttttgttttagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGCTGAAAAATAGAGAGACTCAACGAGAGAGCACGACTGGCCAAAATTCAAAGAATGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtgggtgacagttcaatttctttacctcaatttaagacgtatgttgaaac Alignment from Spaln_nt2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAG-GAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgagcataaaattagttcccagtctaaaattccttttgttttagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGCTGAAAAATAGAGAGACTCAACGAGAGAGCACGACTGGCCAAAATTCAAAGAA-TGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtgggtgacagttcaatttctttacctcaatttaagacgtatgttgaaac Alignment from Pairagon GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGA----GACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgagcataaaattagttcccagtctaaaattccttttgttttagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGCTGAAAAATAGAGAGACTC---AACGAGAGAGCACGACTGGCCAAAATTCAAAGAA-TGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtgggtgacagttcaatttctttacctcaatttaagacgtatgttgaaac Alignment from Exonerate_protein2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgagcataaaattagttcccagtctaaaattccttttgttttagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGCTGAAAAATAGAGAGACTCAACGAGAGAGCACGACTGGCCAAAATTCAAAGAATGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtgggtgacagttcaatttctttacctcaatttaagacgtatgttgaaac Alignment from Exonerate_coding2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgagcataaaattagttcccagtctaaaattccttttgttttagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGCTGAAAAATAGAGAGACTCAACGAGAGAGCACGACTGGCCAAAATTCAAAGAATGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtgggtgacagttcaatttctttacctcaatttaagacgtatgttgaaac Alignment from GeneWise GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgagcataaaattagttcccagtctaaaattccttttgttttagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGCTGAAAAATAGAGAGACTCAACGAGAGAGCACGACTGGCCAAAATTCAAAGAATGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCTGACCAGGATCATGAAAAAATTAAACAAgtgggtgacagttcaatttctttacctcaatttaagacgtatgttgaaac #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAG-GTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGCGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAA-AGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from CESAR GATATTGAGCGCCAG-GTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGCGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAG-AAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Spaln_aa2Genome GATATTGAGCGCCAG-GTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGcGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGA-AAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Spaln_nt2Genome GATATTGAGCGCCAG-GTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGCGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAG-AAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Pairagon GATATTGAGCGCCAG-GTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGCGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAG-AAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGCGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGCGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGCGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAA-TTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGATAGC---TATAAGTCAGTCATGGAACCTGATGAATGTACTGGAACTAAAGAAAC-TGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAA-TTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAGTCAGTCATGGAACCTGATGAATGTACTGGAACTAAAGAAA-CTGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAGTCAGTCATGGAACCTGATGAATGTACTGGAACTAAAGAAACTGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAAT-TGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGATA---GCTATAAGTCAGTCATGGAACCTGATGAATGTACTGGAACTA-AAGAAACTGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAA-TTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGATA---GCTATAAGTCAGTCATGGAACCTGATGAATGTACTGGAACTAAAGAAAC-TGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAGTCAGTCATGGAACCTGATGAATGTACTGGAACTAAAGAAACTGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAGTCAGTCATGGAACCTGATGAATGTACTGGAACTAAAGAAACTGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG atgaaaggtctgagacctcccagtaattcctctgcccttttctctttcagGTATTCCAAAAACTGGAGCAATGCAACACAGAATTGAAGAAATACGGCCGTGTGAACAAAAAGGCACTAGATCAGCTGGTAAACTTTTCCGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAGTCAGTCATGGAACCTGATGAATGTACTGGAACTAAAGAAACTGAAGCTGTTCATTTAACTTTCAAGCAAgtatgtaataagttattctagtgtgcagaacgagtgaatatgtgtaaaat #### Snx15_ID1465_7 --> 2 - 1 Original Alignment aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCT-------GCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagcaAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCACGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCA-TCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCTTCTGCAGGGTGTTTCTggtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from CESAR aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCA------GCT-TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagcaAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCACGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATC-ATCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCTTCTGCAGGGTGTTTCTggtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Spaln_aa2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCA------GCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCACGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCATCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCTTCTGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Spaln_nt2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAG-------CTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCACGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCA-TCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCTTCTGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Pairagon AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGC-------CCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCACGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCA-TCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCTTCTGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Exonerate_protein2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCA------GCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCACGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCATCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCTTCTGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from Exonerate_coding2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCA------GCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCACGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCATCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCTTCTGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg Alignment from GeneWise AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCA------GCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtaatgaataaataggtccccatggggtctctctgtctcacctgtgcagCAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCTGGGAGCCAGGTGGACAACAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCACGGTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCATCAAACTGTGAGAAATAAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGGGTTCACATCCTTCTGCAGGGTGTTTCTGgtaattagtaaggaggtcaagtggaaaacaaaaatcccaataatgtagtg #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATC-CTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg tccctggtcagccatatccctgcccttgattctcccgctgcttgccctagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGAATTCCTGCTACCTCCTCTCATTCCAACAATGCCTCCAGTTG-GGCTCGTTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCGggtactgctggtttcaggcaatgggctgatactgccaattgtaacccttgc Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATC-CTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg tccctggtcagccatatccctgcccttgattctcccgctgcttgccctagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGAATTCCTGCTACCTCCTCTCATTCCAACAATGCCTCCAGTT-GGGCTCGTTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCGggtactgctggtttcaggcaatgggctgatactgccaattgtaacccttgc Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggtcagccatatccctgcccttgattctcccgctgcttgccctagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGAATTCCTGCTACCTCCTCTCATTCCAACAATGCCTCCAGTTGGGCTCGTTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCGGgtactgctggtttcaggcaatgggctgatactgccaattgtaacccttgc Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATC-CTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggtcagccatatccctgcccttgattctcccgctgcttgccctagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGAATTCCTGCTACCTCCTCTCATTCCAACAATGCCTCCAGTTG-GGCTCGTTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCGGgtactgctggtttcaggcaatgggctgatactgccaattgtaacccttgc Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAA-TCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggtcagccatatccctgcccttgattctcccgctgcttgccctagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGAATTCCTGCTACCTCCTCTCATTCCAACAATGCCTCCAGTTG-GGCTCGTTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCGGgtactgctggtttcaggcaatgggctgatactgccaattgtaacccttgc Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggtcagccatatccctgcccttgattctcccgctgcttgccctagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGAATTCCTGCTACCTCCTCTCATTCCAACAATGCCTCCAGTTGGGCTCGTTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCGGgtactgctggtttcaggcaatgggctgatactgccaattgtaacccttgc Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggtcagccatatccctgcccttgattctcccgctgcttgccctagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGAATTCCTGCTACCTCCTCTCATTCCAACAATGCCTCCAGTTGGGCTCGTTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCGGgtactgctggtttcaggcaatgggctgatactgccaattgtaacccttgc Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggtcagccatatccctgcccttgattctcccgctgcttgccctagGGTGGGGAGATAACACGCCCCTCTGAGGTGTCCAGAGACCTGCGAATTCCTGCTACCTCCTCTCATTCCAACAATGCCTCCAGTTGGGCTCGTTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCGGgtactgctggtttcaggcaatgggctgatactgccaattgtaacccttgc #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGAC-CTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattgacactgacatttaatatgaaatattttccaggaCGATTTGAAGCCTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTCACAGTGCCAATCCCTGCCCTCA-CAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagcatctgtactaacagggtcccctcttaatcaaatctgctggcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGAC-CTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattgacactgacatttaatatgaaatattttccaggaCGATTTGAAGCCTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTCACAGTGCCAATCCCTGCCC-TCACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagcatctgtactaacagggtcccctcttaatcaaatctgctggcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattgacactgacatttaatatgaaatattttccagGACGATTTGAAGCCTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTCACAGTGCCAATCCCTGCCCTCACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagcatctgtactaacagggtcccctcttaatcaaatctgctggcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACC-TGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattgacactgacatttaatatgaaatattttccagGACGATTTGAAGCCTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTCACAGTGCCAATCCCTGCCCTC-ACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagcatctgtactaacagggtcccctcttaatcaaatctgctggcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGA-CCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattgacactgacatttaatatgaaatattttccagGACGATTTGAAGCCTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTCACAGTGCCAATCCCTGCCCTC-ACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagcatctgtactaacagggtcccctcttaatcaaatctgctggcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattgacactgacatttaatatgaaatattttccagGACGATTTGAAGCCTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTCACAGTGCCAATCCCTGCCCTCACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagcatctgtactaacagggtcccctcttaatcaaatctgctggcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattgacactgacatttaatatgaaatattttccagGACGATTTGAAGCCTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTCACAGTGCCAATCCCTGCCCTCACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagcatctgtactaacagggtcccctcttaatcaaatctgctggcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG caccaacactgaaacattgacactgacatttaatatgaaatattttccagGACGATTTGAAGCCTCTGTTATTGAGGAGCATCGGAAAGGTGCAGATGACCCTGCTGCGCTTCACAGTGCCAATCCCTGCCCTCACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagcatctgtactaacagggtcccctcttaatcaaatctgctggcctc #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACT-CACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCCACCGGAATCTCTTTCAGGATCTAGAGGAGTTCCCAGCCT-CCCACAAGCCCAGGTGTTTggtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACT-CACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCCACCGGAATCTCTTTCAGGATCTAGAGGAGTTCCCAG-CCTCCCACAAGCCCAGGTGTTTggtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACT-CACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTcCACCGGAATCTCTTTCAGGATCTAGAGGAGTTCCCAGCCTC-CCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTC-ACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCCACCGGAATCTCTTTCAGGATCTAGAGGAGTTCCCAGCC-TCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACT-CACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCCACCGGAATCTCTTTCAGGATCTAGAGGAGTTCCCAGCC-TCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCCACCGGAATCTCTTTCAGGATCTAGAGGAGTTCCCAGCCTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Exonerate_coding2genome TCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagCTCTTGCTAAGGTCTTAATGCTTTTGCTTTAATAGGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCCACCGGAATCTCTTTCAGGATCTAGAGGAGTTCCCAGCCTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from GeneWise GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCCACCGGAATCTCTTTCAGGATCTAGAGGAGTTCCCAGCCTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGC-CGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg agtcataacacttccatgatataattgccctttgaatccttcccatgtagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTACGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCCACCAGCAACTGTGTTGCCAGCAGCAGTTTG-CTGCCTCTCTGACTCTGCCAAACAAggtatgccctgaaggattgcaacagtccacccaccagagccattatcaatc Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGC-CGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg agtcataacacttccatgatataattgccctttgaatccttcccatgtagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTACGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCCACCAGCAACTGTGTTGCCAGCAGCAGTTT-GCTGCCTCTCTGACTCTGCCAAACAAggtatgccctgaaggattgcaacagtccacccaccagagccattatcaata Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAA---CAGCTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtcataacacttccatgatataattgccctttgaatccttcccatgtagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTACGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGCTGCCTCTCTGACTCTGCCAAACAAGgtatgccctgaaggattgcaacagtccacccaccagagccattatcaatc Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCG-CCAACAGCTGTGCTGCCAGC-GCTTCGAGC-GCCTCTCTGACTCCGCCAAACAAG agtcataacacttccatgatataattgccctttgaatccttcccatgtagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTACGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGCTGCCTCTCTGACTCTGCCAAACAAGgtatgccctgaaggattgcaacagtccacccaccagagccattatcaatc Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAG-CCGCCAACAGCTGTGCTGCCAGCGCTTCGAGC--------GCCTCTCTGACTCCGCCAAACAAG agtcataacacttccatgatataattgccctttgaatccttcccatgtagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTACGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCCACCAGCAACTGTGTTGCCAGC------AGCAGTTTGCTGCCTCTCTGACTCTGCCAAACAAGgtatgccctgaaggattgcaacagtccacccaccagagccattatcaatc Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGC-CGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGC--CTCTCTGACTCCGCCAAACAAG agtcataacacttccatgatataattgccctttgaatccttcccatgtagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTACGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGCTGCCTCTCTGACTCTGCCAAACAAGgtatgccctgaaggattgcaacagtccacccaccagagccattatcaatc Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGC-CGCCAACAGCTGTGCTGCCAGCGCTTCGAGCGC--CTCTCTGACTCCGCCAAACAAG agtcataacacttccatgatataattgccctttgaatccttcccatgtagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTACGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGCTGCCTCTCTGACTCTGCCAAACAAGgtatgccctgaaggattgcaacagtccacccaccagagccattatcaatc Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAG------------------CTGTGCTGCCAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtcataacacttccatgatataattgccctttgaatccttcccatgtagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTACGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGCTGC---------------CTCTCTGACTCTGCCAAACAAGgtatgccctgaaggattgcaacagtccacccaccagagccattatcaatc #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGCGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGCGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGcGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGCGAAGTATCTGGGGGGCTCCTAAGAGG---TGTAAGGTATGCAGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAG-----------------------GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC---CGGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGCGAAGTATCTGGGGGGCTCCTAAGAGGT-------------------------GTAAGGTATGCAGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGCGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGCGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from GeneWise GTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagctgagTGTCCAGGAGAAGAACAGGAAGCGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC-TTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTC-GGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC-TTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTC-GGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC-TTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCcTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCG-GACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTC-TTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTC-GGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGT-CTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTC-GGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAG-CTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacccccactttgtgtttttgtctggctaacagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGAT-TGACCACAAGGCTTCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtgagttttccccaccagcctgaatgtgtcttaacaaggcctatgcagtg Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAG-CTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacccccactttgtgtttttgtctggctaacagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGA-TTGACCACAAGGCTTCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtgagttttccccaccagcctgaatgtgtcttaacaaggcctatgcagtg Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacccccactttgtgtttttgtctggctaacagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTGACCACAAGGCTTCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtgagttttccccaccagcctgaatgtgtcttaacaaggcctatgcagtg Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAG-CTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacccccactttgtgtttttgtctggctaacagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATT-GACCACAAGGCTTCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtgagttttccccaccagcctgaatgtgtcttaacaaggcctatgcagtg Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAG-CTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacccccactttgtgtttttgtctggctaacagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATT-GACCACAAGGCTTCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtgagttttccccaccagcctgaatgtgtcttaacaaggcctatgcagtg Alignment from Exonerate_protein2genome ctaacctgttctgccactacccccactttgtgtttttgtctggctaacaggcctgggagcggttggagaaagctgaacatgagagagagctagcattgcgcacagagcctgattcgccagaaaaaactagagcaactagctgctcgattgaccacaaggcttccatgcggaagacctggctcagagagaaccagcgacttgtttctcaagtgagttttccccaccagcctgaatgtgtcttaacaaggcctatgcagtg Alignment from Exonerate_coding2genome ctaacctgttctgccactacccccactttgtgtttttgtctggctaacaggcctgggagcggttggagaaagctgaacatgagagagagctagcattgcgcacagagcctgattcgccagaaaaaactagagcaactagctgctcgattgaccacaaggcttccatgcggaagacctggctcagagagaaccagcgacttgtttctcaagtgagttttccccaccagcctgaatgtgtcttaacaaggcctatgcagtg Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgccactacccccactttgtgtttttgtctggctaacagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTGACCACAAGGCTTCCATGCGGAAGACCTGGCTCAGAGAGAACCAGCGACTTGTTTCTCAAgtgagttttccccaccagcctgaatgtgtcttaacaaggcctatgcagtg #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGC-CTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtacgggcatgtatgtgatctttagcagttccttggattttttcctacagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGGC-GCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagcttacagtttcacaaacaggaccaaaatgtgtgaggtgacaaggg Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGC-CTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtatgtgcatgtatgtgatctttagcagttccttggattttttcctacagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGG-CGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagcttacagtttcacaaacaggaccaaaatgtgtgaggtgacaaggg Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtacgggcatgtatgtgatctttagcagttccttggattttttcctacagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGGCGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagcttacagtttcacaaacaggaccaaaatgtgtgaggtgacaaggg Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGC-CTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtacgggcatgtatgtgatctttagcagttccttggattttttcctacagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGGC-GCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagcttacagtttcacaaacaggaccaaaatgtgtgaggtgacaaggg Alignment from Pairagon CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAG-CCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtacgggcatgtatgtgatctttagcagttccttggattttttcctacagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGGC-GCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagcttacagtttcacaaacaggaccaaaatgtgtgaggtgacaaggg Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtacgggcatgtatgtgatctttagcagttccttggattttttcctacagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGGCGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagcttacagtttcacaaacaggaccaaaatgtgtgaggtgacaaggg Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtacgggcatgtatgtgatctttagcagttccttggattttttcctacagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGGCGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagcttacagtttcacaaacaggaccaaaatgtgtgaggtgacaaggg Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT gtacgggcatgtatgtgatctttagcagttccttggattttttcctacagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCCTGAAGGAGTTGGCAGGAGAGCGGCATCAACGGCGCAGGAGCACCTCCGGCCGTGCCAACTCCGAAGAGAGCTAGATGATCTAGAACAGTGGATACAGGAGCATGAGGTTGTTGCAGCCTCCCATGAGTTGGGCCAAGACTATGAACATGTGACTgtgagcttacagtttcacaaacaggaccaaaatgtgtgaggtgacaaggg #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCA-TTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagttTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCACGTGGTGCGAAGTGCAGAATTGGGTTGTACTG-GGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCA-TTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagttTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCACGTGGTGCGAAGTGCAGAATTGGGTTGTACT-GGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCACGTGGTGCGAAGTGCAGAATTGGGTTGTACTGGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCAT-TGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCACGTGGTGCGAAGTGCAGAATTGGGTTGTACTG-GGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCAT-TGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCACGTGGTGCGAAGTGCAGAATTGGGTTGTACTG-GGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCACGTGGTGCGAAGTGCAGAATTGGGTTGTACTGGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCACGTGGTGCGAAGTGCAGAATTGGGTTGTACTGGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCACGTGGTGCGAAGTGCAGAATTGGGTTGTACTGGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGG-AAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg cgtattcaactctcactgcttcccactcttttttatttgtttgtttccagCTGGAAGAGAGGGAAAATGAACGACAAAAGGAAGAGGGAGGGGGAGGAACAGA-GAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTTGACACTGCTTGGGATgggtgggcattgatagcaaatgctaacactggtaaatgaccctttatgtcta Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGG-AAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg cgtattcaactctcactgcttcccactcttttttatttgtttgtttccagCTGGAAGAGAGGGAAAATGAACGACAAAAGGAAGAGGGAGGGGGAGGAACAGA-GAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTTGACACTGCTTGGGATgggtgggcattgatagcaaatgctaacactggtaaatgaccctcttcgtttt Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cgtattcaactctcactgcttcccactcttttttatttgtttgtttccagCTGGAAGAGAGGGAAAATGAACGACAAAAGGAAGAGGGAGGGGGAGGAACAGAGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTTGACACTGCTTGGGATGGgtgggcattgatagcaaatgctaacactggtaaatgaccctttatgtcta Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGG-AAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cgtattcaactctcactgcttcccactcttttttatttgtttgtttccagCTGGAAGAGAGGGAAAATGAACGACAAAAGGAAGAGGGAGGGGGAGGAACAGA-GAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTTGACACTGCTTGGGATGGgtgggcattgatagcaaatgctaacactggtaaatgaccctttatgtcta Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGG-AAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cgtattcaactctcactgcttcccactcttttttatttgtttgtttccagCTGGAAGAGAGGGAAAATGAACGACAAAAGGAAGAGGGAGGGGGAGGAACAGA-GAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTTGACACTGCTTGGGATGGgtgggcattgatagcaaatgctaacactggtaaatgaccctttatgtcta Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cgtattcaactctcactgcttcccactcttttttatttgtttgtttccagCTGGAAGAGAGGGAAAATGAACGACAAAAGGAAGAGGGAGGGGGAGGAACAGAGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTTGACACTGCTTGGGATGGgtgggcattgatagcaaatgctaacactggtaaatgaccctttatgtcta Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cgtattcaactctcactgcttcccactcttttttatttgtttgtttccagCTGGAAGAGAGGGAAAATGAACGACAAAAGGAAGAGGGAGGGGGAGGAACAGAGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTTGACACTGCTTGGGATGGgtgggcattgatagcaaatgctaacactggtaaatgaccctttatgtcta Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACTTCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG cgtattcaactctcactgcttcccactcttttttatttgtttgtttccagCTGGAAGAGAGGGAAAATGAACGACAAAAGGAAGAGGGAGGGGGAGGAACAGAGAAACAACCTTCCACTTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCTTGACACTGCTTGGGATGGgtgggcattgatagcaaatgctaacactggtaaatgaccctttatgtcta #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGC-TGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttggtgttcttgtaataattagaGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGC-CATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTaggtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGC-TGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttggtgttcttgtaataattagaGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGC-CATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTaggtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGC-TGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCcTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCATA-GTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGG-CTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGG-CCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGG-CTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGG-CCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGC-TGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCC--ATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCATA---GTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGC-TGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCC--ATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCATA---GTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTG-CTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCCTTCTCATGGCCCAGCAGGATCAGACATCTC-CATCTACCCACACCTCTACTTGgtaggaggtcctttccatggctgttttttgtttcagGGCTCTGAATGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTG-CTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCCTTCTCATGGCCCAGCAGGATCAGACATCT-CCATCTACCCACACCTCTACTTGgtaggaggtccttttattcatcattatgttttacagGGCTCTGAATGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCCTTCTCATGGCCCAGCAGGATCAGACATCTCCATCTACCCACACCTCTACTTGgtaggaggtcctttccatggctgttttttgtttcagGGCTCTGAATGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGC-TGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTT------ATACCGTGACTTTATTGACAATCAGATGCTGCCTTCTCATGGCCCAGCAGGATCAGACATCTC-CATCTACCCACACCTCTACTTGgtaggaggtcctttccatggctgttttttgtttcagGGCTCTGAATGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTG-CTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTT------ATACCGTGACTTTATTGACAATCAGATGCTGCCTTCTCATGGCCCAGCAGGATCAGACATCTC-CATCTACCCACACCTCTACTTGgtaggaggtcctttccatggctgttttttgtttcagGGCTCTGAATGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCCTTCTCATGGCCCAGCAGGATCAGACATCTCCATCTACCCACACCTCTACTTGgtaggaggtcctttccatggctgttttttgtttcagGGCTCTGAATGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCCTTCTCATGGCCCAGCAGGATCAGACATCTCCATCTACCCACACCTCTACTTGgtaggaggtcctttccatggctgttttttgtttcagGGCTCTGAATGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCCTTCTCATGGCCCAGCAGGATCAGACATCTCCATCTACCCACACCTCTACTTGGTAGGAGGTCCTTTCCATGGCTGTTTTTTGTTTCAGGGCTCTGAATGGAA #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGT-GCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca tacctggttgaccacccaggccaagggccactaacctctccacattttaggGCCACATTGCAAGTATTGCACCAGGCCTGTGAGGTAGCTCTTGGTAGCGGCCTTGTGCCTGGTGGAAGCCGCTCTTGCATGGGCTACTTACTACCAGG-GAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCGATGTCCGACCTGGAGTCATTTCGACCACCCAATGCAGAGCCCACAcagtcaggggagggacaggatgaagcagaaaaattaagtggaaggtgtttgt Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGT-GCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca tacctggttgaccacccaggccaagggccactaacctctccacattttaggGCCACATTGCAAGTATTGCACCAGGCCTGTGAGGTAGCTCTTGGTAGCGGCCTTGTGCCTGGTGGAAGCCGCTCTTGCATGGGCTACTTACTACCAG-GGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCGATGTCCGACCTGGAGTCATTTCGACCACCCAATGCAGAGCCCACAcagtcaggggagggacaggatgaagcagaaaaattaagtggaaggtgtttgt Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tacctggttgaccacccaggccaagggccactaacctctccacattttagGGCCACATTGCAAGTATTGCACCAGGCCTGTGAGGTAGCTCTTGGTAGCGGCCTTGTGCCTGGTGGAAGCCGCTCTTGCATGGGCTACTTACTACCAGGGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCGATGTCCGACCTGGAGTCATTTCGACCACCCAATGCAGAGCCCACACAgtcaggggagggacaggatgaagcagaaaaattaagtggaaggtgtttgt Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGT-GCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tacctggttgaccacccaggccaagggccactaacctctccacattttagGGCCACATTGCAAGTATTGCACCAGGCCTGTGAGGTAGCTCTTGGTAGCGGCCTTGTGCCTGGTGGAAGCCGCTCTTGCATGGGCTACTTACTACCAGG-GAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCGATGTCCGACCTGGAGTCATTTCGACCACCCAATGCAGAGCCCACACAgtcaggggagggacaggatgaagcagaaaaattaagtggaaggtgtttgt Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAG-TGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tacctggttgaccacccaggccaagggccactaacctctccacattttagGGCCACATTGCAAGTATTGCACCAGGCCTGTGAGGTAGCTCTTGGTAGCGGCCTTGTGCCTGGTGGAAGCCGCTCTTGCATGGGCTACTTACTACCAGG-GAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCGATGTCCGACCTGGAGTCATTTCGACCACCCAATGCAGAGCCCACACAgtcaggggagggacaggatgaagcagaaaaattaagtggaaggtgtttgt Alignment from Exonerate_protein2genome TACCAGG AGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA TACCTGGttgaccacccaggccaagggccactaacctctccacattttagggccacattgcaagtattgcaccaggcctgtgaggtagctcttggtagcggccttgtgcctggtggaagccgctcttgcatgggctacttactaccagGGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCGATGTCCGACCTGGAGTCATTTCGACCACCCAATGCAGAGCCCACACAgtcaggggagggacaggatgaagcagaaaaattaagtggaaggtgtttgt Alignment from Exonerate_coding2genome TACCAGG AGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA TACCTGGttgaccacccaggccaagggccactaacctctccacattttagggccacattgcaagtattgcaccaggcctgtgaggtagctcttggtagcggccttgtgcctggtggaagccgctcttgcatgggctacttactaccagGGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCGATGTCCGACCTGGAGTCATTTCGACCACCCAATGCAGAGCCCACACAgtcaggggagggacaggatgaagcagaaaaattaagtggaaggtgtttgt Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA tacctggttgaccacccaggccaagggccactaacctctccacattttagGGCCACATTGCAAGTATTGCACCAGGCCTGTGAGGTAGCTCTTGGTAGCGGCCTTGTGCCTGGTGGAAGCCGCTCTTGCATGGGCTACTTACTACCAGGGAAGCTTAACTCTGATCAGGGCTGCCTAAATGAATGGATGGCGATGTCCGACCTGGAGTCATTTCGACCACCCAATGCAGAGCCCACACAgtcaggggagggacaggatgaagcagaaaaattaagtggaaggtgtttgt #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagcGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGC-TCTTTCTATCCAGACTATGtggtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from CESAR gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagcGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCA-AGCTCTTTCTATCCAGACTATGtggtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Spaln_aa2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGcACGTCTGGTGGCCAAAGCCGAATCTTCAAGCT-CTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Spaln_nt2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAG-CTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Pairagon GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAG-CTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Exonerate_coding2genome GCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagcggCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCT-CTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from GeneWise ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagcggcttaagtgtgcacgtctggtggccaaagccgaatcttcaagctctttctatccagactatgtggtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACA-AAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagatAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACACAAAGCGATGCAC------CAAAAGGCATTAGACCTGG-CTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACA-AAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagatAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACACAAAGCGATG------CACCAAAAGGCATTAGACCTG-GCTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACACAAAGC---GATGCA---CCAAAAGGCATTAGACCTGGCTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACA-AAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACACAAAGCGA------TGCACCAAAAGGCATTAGACCTGG-CTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACA-AAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACACAAAGCGA------TGCACCAAAAGGCATTAGACCTGG-CTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACACAAAGC---GATGCA---CCAAAAGGCATTAGACCTGGCTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACACAAAGC-----GATGCACCAAAAGGCATTAGACCTGGC-TCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACACAAAGC---GATGCA---CCAAAAGGCATTAGACCTGGCTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagctGGCAAGAAGACAACAGATGAACGAGCTAGAGGAGATGTTAGAGAGTGGTA-TCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from CESAR ctGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagctGGCAAGAAGACAACAGATGAACGAGCTAGAGGAGATGTTAGAGAGTGGT-ATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAAcGAGCTAGAGGAGATGTTAGAGAGTGGTAT-CCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAACGAGCTAGAGGAGATGTTAGAGAGTGG-TATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Pairagon CTGGCAAGAAGACAACAGATGAG-GAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAACGAGCTAGAGGAGATGTTAGAGAGTGGT-ATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAACGAGCTAGAGGAGATGTTAGAGAGTGGTATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAACGAGCTAGAGGAGATGTTAGAGAGTGGTATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAACGAGCTAGAGGAGATGTTAGAGAGTGGTATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGT-CAGTGAACTTACCCTTATGGCTaggtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from CESAR AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAG-TCAGTGAACTTACCCTTATGGCTaggtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Spaln_aa2Genome AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTC---ATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAcAGCAAACCAGCTCTGCATGCAGCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGGTAGgctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Spaln_nt2Genome AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGT-CAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Pairagon AATGGAATCCAAACA-AGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGT-CAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACACAGCAAACCAGCTCTGCATGCAGCCCGTCAGTCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTC-CTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaatttggcagtaacctcaaatgttctgtttaaattatgtatagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTG-GCAGCTGAGGGCACCAGAGATGGAAgtaagggaaggacaggattcagggcagggtctctcaatgctgtttcatac Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTC-CTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaatttggcagtaacctcaaatgttctgtttaaattatgtatagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTG-GCAGCTGAGGGCACCAGAGATGGAAgtaagggaaggacaggattcagggcagggtctctcaatgctgtttcatac Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaatttggcagtaacctcaaatgttctgtttaaattatgtatagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGCAGCTGAGGGCACCAGAGATGGAAgtaagggaaggacaggattcagggcagggtctctcaatgctgtttcatac Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTC-CTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaatttggcagtaacctcaaatgttctgtttaaattatgtatagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTT-GGCAGCTGAGGGCACCAGAGATGGAAgtaagggaaggacaggattcagggcagggtctctcaatgctgtttcatac Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTT-CCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaatttggcagtaacctcaaatgttctgtttaaattatgtatagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTT-GGCAGCTGAGGGCACCAGAGATGGAAgtaagggaaggacaggattcagggcagggtctctcaatgctgtttcatac Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaatttggcagtaacctcaaatgttctgtttaaattatgtatagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGCAGCTGAGGGCACCAGAGATGGAAgtaagggaaggacaggattcagggcagggtctctcaatgctgtttcatac Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagacagaatttggcagtaacctcaaatgttctgtttaaattatgtatagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGCAGCTGAGGGCACCAGAGATGGAAgtaagggaaggacaggattcagggcagggtctctcaatgctgtttcatac Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG-------------------------------------------------- cagacagaatttggcagtaacctcaaatgttctgtttaaattatgtatagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGCAGCTGAGGGCACCAGAGATGGAAGTAAGGGAAGGACAGGATTCAGGGCAGGGTCTCTCAATGCTGTTTCATAC #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCT-CGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGT-CTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctttttgctttgcc Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCT-CGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAG-TCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgttctgtgcct Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCT-CGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCcCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTC-TTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctttttgctttgcc Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAG-CCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTC-TTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctttttgctttgcc Alignment from Pairagon ------------------------------------------------AGCACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAG-CCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT GGCAGGGTCTCTCAATGCTGTTTCATACATTTTTTTTCCTTCTCAAAAAGCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGT-CTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctttttgctttgcc Alignment from Exonerate_protein2genome GGAGCACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaAAAGCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctttttgctttgcc Alignment from Exonerate_coding2genome GGAGCACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaAAAGCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctttttgctttgcc Alignment from GeneWise --------------------------------------------------CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT GGCAGGGTCTCTCAATGCTGTTTCATACATTTTTTTTCCTTCTCAAAAAGCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctttttgctttgcc #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATC-AAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCCAAGGTGCACACATTTCCACTGTTTGCCA-TAAGCCCATGTACCTGGCCATGaggtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from CESAR gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATC-AAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCCAAGGTGCACACATTTCCACTGTTTGCCA-TAAGCCCATGTACCTGGCCATGaggtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCCAAGGTGCACACATTTCCACTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGAT-CAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCCAAGGTGCACACATTTCCACTGTTTGCCA-TAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGAT-CAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCCAAGGTGCACACATTTCCACTGTTTGCCA-TAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCCAAGGTGCACACATTTCCACTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCCAAGGTGCACACATTTCCACTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCCAAGGTGCACACATTTCCACTGTTTGCCATAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATG-TTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtcgtactgacagctgagtctcgtccttttaaaatttttgttcatttagtcCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCT-TCCACCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACAAGTACAggtataaccgtgtaagccagagtgattttgaagggcaatcgacaggcagga Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATG-TTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtcgtactgacagctgagtctcgtccttttaaaatttttgttcatttagtcCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCT-TCCACCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACAAGTACAggtataaccgtgtaagccagagtgattttgaagggcaatcgacaggcagga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtcgtactgacagctgagtctcgtccttttaaaatttttgttcatttagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTCCACCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACAAGTACAGgtataaccgtgtaagccagagtgattttgaagggcaatcgacaggcagga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGT-TCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtcgtactgacagctgagtctcgtccttttaaaatttttgttcatttagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGT-CCCTTCCACCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACAAGTACAGgtataaccgtgtaagccagagtgattttgaagggcaatcgacaggcagga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATG-TTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtcgtactgacagctgagtctcgtccttttaaaatttttgttcatttagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCC-TTCCACCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACAAGTACAGgtataaccgtgtaagccagagtgattttgaagggcaatcgacaggcagga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtcgtactgacagctgagtctcgtccttttaaaatttttgttcatttagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTCCACCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACAAGTACAGgtataaccgtgtaagccagagtgattttgaagggcaatcgacaggcagga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtcgtactgacagctgagtctcgtccttttaaaatttttgttcatttagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTCCACCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACAAGTACAGgtataaccgtgtaagccagagtgattttgaagggcaatcgacaggcagga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtcgtactgacagctgagtctcgtccttttaaaatttttgttcatttagTCCCCCAGGGCCTCCTGTCATCTTTTCCTCCAGGCATGCTTCCCACTATGGCCCCCAATGGGTCCCTTCCACCTGTCCCACCTCCCCCGAGTTCTGGAAAGGCTGCTGCTGCTCCACCCACAAGTACAGgtataaccgtgtaagccagagtgattttgaagggcaatcgacaggcagga #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACC-AGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgacccacttccaatttaccttagctgttctccttgcttctctagctGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACACGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAA-TGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACC-AGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgacccacttccaatttaccttagctgttctccttgcttctctagctGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACACGGTCCCTCTGCCCCAGCATCCGGATCTGTACCA-ATGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACACGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAATGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCAC-CAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACACGGTCCCTCTGCCCCAGCATCCGGATCTGTACC-AATGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCAC-CAGTACTTCTGCCCCAGCACCTGGGTCTGTACC--TGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACACGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAATG---CAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACACGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAATGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACACGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAATGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACACGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAATGCAGAGGCTGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTT-GCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTCGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATG-GCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTT-GCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTCGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCAT-GGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTCGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGC-TTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTCGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATG-GCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTT-GCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTCGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATG-GCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGC-TTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCAT--GAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTCGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGG---CGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGC-TTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTCGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCAT-GGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTCGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt #### Taf5_ID10097_5 --> 1 - 0 Original Alignment aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGAC-AAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagaATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACCAAAATAATGAATATGAAAGAAACTACCAAACGGGTGC-CCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from CESAR aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGAC-AAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagaATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACCAAAATAATGAATATGAAAGAAACTACCAAACGGGTG-CCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Spaln_aa2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGAC-AAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACcAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCCCTTGGG-CCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Spaln_nt2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGA-CAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACCAAAATAATGAATATGAAAGAAACTACCAAACGGGTGC-CCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Pairagon AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGA-CAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACCAAAATAATGAATATGAAAGAAACTACCAAACGGGTGC-CCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Exonerate_protein2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACCAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from Exonerate_coding2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACCAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta Alignment from GeneWise AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gatacaaaattctgcacaattgactgtctgctcttgttccctgtgtgtagAATTCCTCTTCCGGAACTAAAAGATTCAGACAAACTAGACCAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTCCTTAATGCTTACCAGgtctgtaagaaagcaggcagtactatggcacacaagtggacagagctgta #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATT-GGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTCGGACATGGCCTGATGGTTGGAGAATTAAAAG-CCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATT-GGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTCGGACATGGCCTGATGGTTGGAGAAT-TAAAAGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTCGGACATGGCCTGATGGTTGGAGAATTAAAAGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATT-GGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTCGGACATGGCCTGATGGTTGGAGAATT-AAAAGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATT-GGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTCGGACATGGCCTGATGGTTGGAGAATTAAAA-GCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTCGGACATGGCCTGATGGTTGGAGAATTAAAAGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTCGGACATGGCCTGATGGTTGGAGAATTAAAAGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG ccatgctattacactacaattccactctattcataattcatattttccagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTCGGACATGGCCTGATGGTTGGAGAATTAAAAGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgcggcctgtagggacctcataatagtgctttcataattaatgtaaata #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG gaagggaataggggggaatagatgggagcgtgctccttcacttcctgcagaCAGCAAGGGCATCTACAGGTTATGAAAGCCTACCAACTTGCACCGCCCAGAACAAGGATATTGTCACTGTCAGGCGC-GGGACCTGTAGCTGCTGTACTTCTCATGCATCTACCGCCAGAGgtgagtaacctagggagaccctccctccctaataggacccaacttgcaac Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG gaagggaataggggggaatagatgggagcgtgctccttcacttcctgcagaCAGCAAGGGCATCTACAGGTTATGAAAGCCTACCAACTTGCACCGCCCAGAACAAGGATATTGTCACTGTCAGGCG-CGGGACCTGTAGCTGCTGTACTTCTCATGCATCTACCGCCAGAGgtgagtaacctagggagaccctccctccctaataggacccaacttgcaac Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAG-----GGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG gaagggaataggggggaatagatgggagcgtgctccttcacttcctgcagACAGCAAGGGCATCTACAGGTTATGAAAGCCTACcAACTTGCACCGCCCAGAACAAGGATATTGTCACTGTCAGGCGcgGGACCTGTAGCTGCTGTACTTCTCATGCATCTACCGCCAGAGgtgagtaacctagggagaccctccctccctaataggacccaacttgcaac Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGG-----GACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG gaagggaataggggggaatagatgggagcgtgctccttcacttcctgcagACAGCAAGGGCATCTACAGGTTATGAAAGCCTACCAACTTGCACCGCCCAGAACAAGGATATTGTCACTGTCAGGCGCGGGACCTGTAGCTGCTGTACTTCTCATGCATCTACCGCCAGAGgtgagtaacctagggagaccctccctccctaataggacccaacttgcaac Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTA-CACCCTGTACCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG gaagggaataggggggaatagatgggagcgtgctccttcacttcctgcagACAGCAAGGGCATCTACAGGTTATGAAAGCCTACCAACTTGCACCGCCCAGAACAAGGATATTGTCACTGTCAGGCGC-GGGACCTGTAGCTGCTGTACTTCTCATGCATCTACCGCCAGAGgtgagtaacctagggagaccctccctccctaataggacccaacttgcaac Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAG-----GGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG gaagggaataggggggaatagatgggagcgtgctccttcacttcctgcagACAGCAAGGGCATCTACAGGTTATGAAAGCCTACCAACTTGCACCGCCCAGAACAAGGATATTGTCACTGTCAGGCGCGGGACCTGTAGCTGCTGTACTTCTCATGCATCTACCGCCAGAGgtgagtaacctagggagaccctccctccctaataggacccaacttgcaac Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAG-----GGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG gaagggaataggggggaatagatgggagcgtgctccttcacttcctgcagACAGCAAGGGCATCTACAGGTTATGAAAGCCTACCAACTTGCACCGCCCAGAACAAGGATATTGTCACTGTCAGGCGCGGGACCTGTAGCTGCTGTACTTCTCATGCATCTACCGCCAGAGgtgagtaacctagggagaccctccctccctaataggacccaacttgcaac Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGA------CCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG gaagggaataggggggaatagatgggagcgtgctccttcacttcctgcagACAGCAAGGGCATCTACAGGTTATGAAAGCCTACCAACTTGCACCGCCCAGAACAAGGATATTGTCACTGTCAGGCGCGGGACCTGTAGCTGCTGTACTTCTCATGCATCTACCGCCAGAGgtgagtaacctagggagaccctccctccctaataggacccaacttgcaac #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCG-CAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtaagaaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCCAGTGGATGGAGGCCACTGGCAGGGACTTGCACC-ACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATgggtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from CESAR TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCG-CAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtgagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCCAGTGGATGGAGGCCACTGGCAGGGACTTGCACC-ACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATgggtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Spaln_aa2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagaaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Spaln_nt2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCG-CAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagaaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCCAGTGGATGGAGGCCACTGGCAGGGACTTGCACC-ACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Pairagon TACCAG GAGCTGGCAGCAGCCCCCGGGGACCC-GCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagaaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCA-CAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Exonerate_protein2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagaaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Exonerate_coding2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtaagaaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from GeneWise TACCAG------GAGCTGGCAGCAGCC---------------------------------------CCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGGTAAGAAGGCTAGGAAGTGCCCTATTATCGCTTTGCTGCCCTAGGAACTGGCATCAGCCCCCGGGGACCCTCCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCA-CAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCC-ATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccttcttggccgcctctccctcagGAACTG Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTC-CATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgccctattatcgctttgctgccctagGAACTG Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccttcttggccgcctctccctcagGAACTG Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATC-CCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCC-ATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccttcttggccgcctctccctcagGAACTG Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCA-TCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCC-ATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccttcttggccgcctctccctcagGAACTG Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccttcttggccgcctctccctcagGAACTG Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccttcttggccgcctctccctcagGAACTG Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG cctcttttttataatgtttttttgctgtgctgtgttcttctgttttaaagGTAAAGATACAATGTCACAAGGGCATTCCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtgagtaggctaggaagtgcccttcttggccgcctctccctcagGAACTG #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGC-ATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagagCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTG-GTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtatgaatctatttagtgggatttggcagggaccatgggttgattttgcc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGC-ATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagagCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCT-GGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtatgaatctatttagtgggatttggcagggaccatgggttgatttcttc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattttgcc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGC-ATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTG-GTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattttgcc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCC-TGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTG-GTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattttgcc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattttgcc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGGTATGAAtctatttagtgggatttggcagggaccatgggttgattttgcc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCCATGGGCCGAGAGATTGGGGTCGCGGCTGTAGTATTGGTCCCTGGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattttgcc #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTAC-GTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG acacaatgtaactccaattcaatgtgcatatgcatataattgaaatgaagGAAGTGGTACAGTATCGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTC-GCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGGAACTCCCAAAGACGA---GCAGGCCAACAGgtgagcacataaggcttgggctaagtgctgacacatgtaacctcttcttc Alignment from CESAR GAAGTGGTACAGTAC-GTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG acacaatgtaactccaattcaatgtgcatatgcatataattgaaatgaagGAAGTGGTACAGTATCGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATT-CGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGGAACTCCCAAAGACGA---GCAGGCCAACAGgtgagcacataaggcttgggctaagtgctgacacatgtaacctcttcttc Alignment from Spaln_aa2Genome GAAGTGGTACAGTAC-GTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG acacaatgtaactccaattcaatgtgcatatgcatataattgaaatgaagGAAGTGGTACAGTATcGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCG-CTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGGAACTCCCAAAGACGA---GCAGGCCAACAGgtgagcacataaggcttgggctaagtgctgacacatgtaacctcttcttc Alignment from Spaln_nt2Genome GAAGTGGTACAGTA-CGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG acacaatgtaactccaattcaatgtgcatatgcatataattgaaatgaagGAAGTGGTACAGTATCGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTC-GCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGGAACTCCCA---AAGACGAGCAGGCCAACAGgtgagcacataaggcttgggctaagtgctgacacatgtaacctcttcttc Alignment from Pairagon GAAGTGGTACAGTA-CGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG acacaatgtaactccaattcaatgtgcatatgcatataattgaaatgaagGAAGTGGTACAGTATCGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTC-GCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGGAACTCCCA---AAGACGAGCAGGCCAACAGgtgagcacataaggcttgggctaagtgctgacacatgtaacctcttcttc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG acacaatgtaactccaattcaatgtgcatatgcatataattgaaatgaagGAAGTGGTACAGTATCGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGGAACTCCCAAAGACGA---GCAGGCCAACAGgtgagcacataaggcttgggctaagtgctgacacatgtaacctcttcttc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG acacaatgtaactccaattcaatgtgcatatgcatataattgaaatgaagGAAGTGGTACAGTATCGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGGAACTCCCAAAGACGA---GCAGGCCAACAGgtgagcacataaggcttgggctaagtgctgacacatgtaacctcttcttc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG acacaatgtaactccaattcaatgtgcatatgcatataattgaaatgaagGAAGTGGTACAGTATCGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGGAACTCCCAAAGACGA---GCAGGCCAACAGgtgagcacataaggcttgggctaagtgctgacacatgtaacctcttcttc #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGCAAGATGTCAGTCATCCTAGGGGTCACACACATGGCAT-TGGGGTTTTCCTCAGCATCTTCAATCAGgtgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGCAAGATGTCAGTCATCCTAGGGGTCACACACATGGCA-TTGGGGTTTTCCTCAGCATCTTCAATCAGgtgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGcAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTGGG-GTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGCAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATTGGGGT-TTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGCAAGATGTCAGTCATCCTAGGGGTCACACACATGGCA-TTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCC--TTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGCAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATT---GGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCC--TTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGCAAGATGTCAGTCATCCTAGGGGTCACACACATGGCATT---GGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG---ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT gacagagtcaagcatgttgccaagtgttcctttcttatttcaaaattcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCTTTCAAGATGCAAGATGTCAGTCATCCTAGGGGTCACACACAT---GGCATTGGGGTTTTCCTCAGCATCTTCAATCAGGTgtaagctgacaggtttatgcatgggtggtatgcgcccagtcttgcctcat #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGA-TACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGCTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCT-CACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGctgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGA-TACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGCTACCTACTTCTCCTTACAGGTCTGTTCTCTGTC-TCACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGctgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGCTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTCACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTC-GATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGCTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCT-CACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTC-GATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGCTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCT-CACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTGTAAGACTATGATGGTTGGTTCATGTCCAGGTTATCTGATGTGAAGCATA Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGCTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTCACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGCTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTCACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggaacctatctttttcattactttctttttcttcccagATCTGGCAGACCTTCTTTGGAGGTCAGCTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTCACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtaagactatgatggttggttcatgtccaggttatctgatgtgaagcata #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACAC-AAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgagttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACC-ACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACAC-AAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgtggtcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGAC-CACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgagttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACA-CAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgagttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACC-ACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACA-CAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgagttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACC-ACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACAC-AAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGAC--CTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgagttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCA---CCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACAC-AAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGAC--CTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgagttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCA---CCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgagttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACCAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCCTAC-AAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagcTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCGGCCTTAGAGCGCCTGTTGTGGAGAGCTT-CCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggacttaactgtgtggtgttccccaagGGTGAGCC Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTAC-AAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagcTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCGGCCTTAGAGCGCCTGTTGTGGAGAGCT-TCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCC Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCGGCCTTAGAGCGCCTGTTGTGGAGAGCTTCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggacttaactgtgtggtgttccccaagGGTGAGCC Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACA-AGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCGGCCTTAGAGCGCCTGTTGTGGAGAGCTT-CCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggacttaactgtgtggtgttccccaagGGTGAGCC Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTA-CAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCGGCCTTAGAGCGCCTGTTGTGGAGAGCTT-CCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggacttaactgtgtggtgttccccaagGGTGAGCC Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCGGCCTTAGAGCGCCTGTTGTGGAGAGCTTCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggacttaactgtgtggtgttccccaagGGTGAGCC Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCGGCCTTAGAGCGCCTGTTGTGGAGAGCTTCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggacttaactgtgtggtgttccccaagGGTGAGCC Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG------------------------------------------GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACCAAGGCAGCGGCCTTAGAGCGCCTGTTGTGGAGAGCTTCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAGTGAGTGTAAAGGCAGGACTTAACTGTGTGGTGTTCCCCAAGGGTGAGCC #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGA-CCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcactgtgtacatgccagtagtggttccttctcttgactaacagGTGGCAGCTGACCACACTGAAGGTCCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACCC-GGGTCCACATTCTGACCTGAAAGTTaagtaagttggggcagccaagctttcttggcattctcacattcacgctctgc Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCC-TTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcactgtgtacatgccagtagtggttccttctcttgactaacagGTGGCAGCTGACCACACTGAAGGTCCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACCC-GGGTCCACATTCTGACCTGAAAGTTaagtaagttggggcagccaagctttcttggcattctcacattcacgctctgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCC-TTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcactgtgtacatgccagtagtggttccttctcttgactaacagGTGGCAGCTGACCACACTGAAGGTCCCtCTCTCAGAGACAACACCCCTTCTTCCAGGCACCCG-GGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagccaagctttcttggcattctcacattcacgctctgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCT-TCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcactgtgtacatgccagtagtggttccttctcttgactaacagGTGGCAGCTGACCACACTGAAGGTCCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACCC-GGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagccaagctttcttggcattctcacattcacgctctgc Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCT-TCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcactgtgtacatgccagtagtggttccttctcttgactaacagGTGGCAGCTGACCACACTGAAGGTCCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACCC-GGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagccaagctttcttggcattctcacattcacgctctgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcactgtgtacatgccagtagtggttccttctcttgactaacagGTGGCAGCTGACCACACTGAAGGTCCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACCCGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagccaagctttcttggcattctcacattcacgctctgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcactgtgtacatgccagtagtggttccttctcttgactaacagGTGGCAGCTGACCACACTGAAGGTCCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACCCGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagccaagctttcttggcattctcacattcacgctctgc Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcactgtgtacatgccagtagtggttccttctcttgactaacagGTGGCAGCTGACCACACTGAAGGTCCCTCTCTCAGAGACAACACCCCTTCTTCCAGGCACCCGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagccaagctttcttggcattctcacattcacgctctgc #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGA-GACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagccTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCTGAGGGGACACTACCAGCACCACCTCCAAGGCGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTG-GCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGA-GACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagccTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCTGAGGGGACACTACCAGCACCACCTCCAAGGCGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCT-GGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCTGAGGGGACACTACCAGCACCACCTCCAAGGCGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGA-GACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCTGAGGGGACACTACCAGCACCACCTCCAAGGCGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTG-GCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCC-CCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCTGAGGGGACACTACCAGCACCACCTCCAAGGCGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTG-GCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGA-GACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAG--GAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCTGAGGGGACACTACCAGCACCACCTCCAAGGCGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGG---CTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGA-GACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAG--GAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCTGAGGGGACACTACCAGCACCACCTCCAAGGCGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGG---CTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG acttgaccatgtggaatttcttccggtctctctgtcatccgttgcacaagCCTTCTTGAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCTCCACCTGAGGGGACACTACCAGCACCACCTCCAAGGCGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCCCAGCTGCACCACTTACGACTATACTCATCTGTGCTGGGCCAGAGCCACAGTCCACCAgtgaggtcctagtcagaagagccccagtccaccagttggctcttagttag #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAG-AGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatgcagataaagataaaccgacctcgtgttcctgcagTTCAATGAGTCTGTAAGTGCATTCCAGCAGACGCTTTGTGGTGGATGTGCAGCACTGTG-GGAACTGGACAAGACATTTagtaagatatcctcagcagatttgggttgacggagtgtggttcgtttgccc Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAG-AGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatgcagataaagataaaccgacctcgtgttcctgcagTTCAATGAGTCTGTAAGTGCATTCCAGCAGACGCTTTGTGGTGGATGTGCAGCACTGT-GGGAACTGGACAAGACATTTagtaagatatcctcagcagatttgggttgacggagtgtggttcgtttgccc Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcagataaagataaaccgacctcgtgttcctgcagTTCAATGAGTCTGTAAGTGCATTCCAGCAGACGCTTTGTGGTGGATGTGCAGCACTGTGGGAACTGGACAAGACATTTAgtaagatatcctcagcagatttgggttgacggagtgtggttcgtttgccc Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAG-AGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcagataaagataaaccgacctcgtgttcctgcagTTCAATGAGTCTGTAAGTGCATTCCAGCAGACGCTTTGTGGTGGATGTGCAGCACTGTG-GGAACTGGACAAGACATTTAgtaagatatcctcagcagatttgggttgacggagtgtggttcgtttgccc Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAG-AGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcagataaagataaaccgacctcgtgttcctgcagTTCAATGAGTCTGTAAGTGCATTCCAGCAGACGCTTTGTGGTGGATGTGCAGCACTGTG-GGAACTGGACAAGACATTTAgtaagatatcctcagcagatttgggttgacggagtgtggttcgtttgccc Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcagataaagataaaccgacctcgtgttcctgcagTTCAATGAGTCTGTAAGTGCATTCCAGCAGACGCTTTGTGGTGGATGTGCAGCACTGTGGGAACTGGACAAGACATTTAgtaagatatcctcagcagatttgggttgacggagtgtggttcgtttgccc Alignment from Exonerate_coding2genome ctgagtggttctaatgcagataaagataaaccgacctcgtgttcctgcagttcaatgagtctgtaagtgcattccagcagacgctttgtggtggatgtgcagcactgtgggaactggacaagacatttagtaagatatcctcagcagatttgggttgacggagtgtggttcgtttgccc Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatgcagataaagataaaccgacctcgtgttcctgcagTTCAATGAGTCTGTAAGTGCATTCCAGCAGACGCTTTGTGGTGGATGTGCAGCACTGTGGGAACTGGACAAGACATTTAgtaagatatcctcagcagatttgggttgacggagtgtggttcgtttgccc #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTG-GTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGCGTGAGCTTACTGAGGCAACCTGCAGCTGTAGGAG-TGGCGGACTTTGTGCAGAGAGCAACCCAGCAggtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTG-GTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGCGTGAGCTTACTGAGGCAACCTGCAGCTGTAGGAG-TGGCGGACTTTGTGCAGAGAGCAACCCAGCAggtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGCGTGAGCTTACTGAGGCAACCTGCAGCTGTAGGAGTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTG-GTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGCGTGAGCTTACTGAGGCAACCTGCAGCTGTAGGAG-TGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTG-GTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGCGTGAGCTTACTGAGGCAACCTGCAGCTGTAGGAG-TGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGCGTGAGCTTACTGAGGCAACCTGCAGCTGTAGGAGTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGCGTGAGCTTACTGAGGCAACCTGCAGCTGTAGGAGTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGCGTGAGCTTACTGAGGCAACCTGCAGCTGTAGGAGTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt #### Tjp2_ID5274_13 --> 2 - 2 Original Alignment tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACC-AGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag ggtgtaattgtctccaggcaggtagagcgtaccctctgaatccgaggaagctTACAGAGATATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTCTATG-TGACAAGTTGGGTCACTGGCTGGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTAATCCCCAACAAAAGCaggtgagtaactagcttgactccctccccattctgctaaaccccatcctgaa Alignment from CESAR tgTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACC-AGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCag ggtgtaattgtctccaggcaggtagagcgtaccctctgaatccgaggaagctTACAGAGATATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTCTAT-GTGACAAGTTGGGTCACTGGCTGGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTAATCCCCAACAAAAGCaggtgagtaactagcttgactccctccccattctgctaaaccccatcctgaa Alignment from Spaln_aa2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtaattgtctccaggcaggtagagcgtaccctctgaatccgaggaagCTTACAGAGATATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTCTATGTGACAAGTTGGGTCACTGGCTGGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTAATCCCCAACAAAAGCAGgtgagtaactagcttgactccctccccattctgctaaaccccatcctgaa Alignment from Spaln_nt2Genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCA-CCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtaattgtctccaggcaggtagagcgtaccctctgaatccgaggaagCTTACAGAGATATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTCTATG-TGACAAGTTGGGTCACTGGCTGGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTAATCCCCAACAAAAGCAGgtgagtaactagcttgactccctccccattctgctaaaccccatcctgaa Alignment from Pairagon TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCA-CCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtaattgtctccaggcaggtagagcgtaccctctgaatccgaggaagCTTACAGAGATATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTCTATG-TGACAAGTTGGGTCACTGGCTGGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTAATCCCCAACAAAAGCAGgtgagtaactagcttgactccctccccattctgctaaaccccatcctgaa Alignment from Exonerate_protein2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACC-AGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTAC--GATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtaattgtctccaggcaggtagagcgtaccctctgaatccgaggaagCTTACAGAGATATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTCTATGTGAC---AAGTTGGGTCACTGGCTGGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTAATCCCCAACAAAAGCAGgtgagtaactagcttgactccctccccattctgctaaaccccatcctgaa Alignment from Exonerate_coding2genome TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACC-AGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTAC--GATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtaattgtctccaggcaggtagagcgtaccctctgaatccgaggaagCTTACAGAGATATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTCTATGTGAC---AAGTTGGGTCACTGGCTGGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTAATCCCCAACAAAAGCAGgtgagtaactagcttgactccctccccattctgctaaaccccatcctgaa Alignment from GeneWise TGTACAGAGATATCCTGGCTTGTGGCAGGGGAGATTCGTTTTTCATAAGAAGCCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCAGGGGAGAGGTCTTCCGAGTGGTAGACACGCTGTACGATGGCAAGCTGGGCCACTGGCTGGCCGTGAGGATCGGGAATGAGCTGGAGAAAGGCTTGATCCCTAACAAAAGCAG ggtgtaattgtctccaggcaggtagagcgtaccctctgaatccgaggaagCTTACAGAGATATCTTGGCTTGTGGCAGGGGGGATTTGTTTTTCATAAGAAGTCACTTTGAATGTGAGAAGGAAACTCCCCAGAGCCTGGCCTTCACCCAGGGGAGAGGTCTTCCGAGTGGTAGACACACTCTATGTGACAAGTTGGGTCACTGGCTGGCTGTGAGGATCGGGAATGAGCTAGAGCAAGGCTTAATCCCCAACAAAAGCAGgtgagtaactagcttgactccctccccattctgctaaaccccatcctgaa #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTG-GAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGCGAAGTATTGCATGTCACCAAACCAGACAAAT-CCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCagtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTG-GAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGCGAAGTATTGCATGTCACCAAACCAGACAAA-TCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCagtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGCGAAGTATTGCATGTCACCAAACCAGACAAATCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTG-GAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGCGAAGTATTGCATGTCACCAAACCAGAC-AAATCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTG-GAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGCGAAGTATTGCATGTCACCAAACCAGACAAAT-CCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGCGAAGTATTGCATGTCACCAAACCAGACAAATCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGCGAAGTATTGCATGTCACCAAACCAGACAAATCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgcttcacaggggaagtgttgtcaccccgatttgttttattttcctacagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGCGAAGTATTGCATGTCACCAAACCAGACAAATCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtaagagaactcccagtgtctagcttcaaattgaatgttgcttggttgct #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGA-GCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagcaTCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCTGGGCGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGA-GAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGA-GCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagcaTCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCTGGGCGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAG-AGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCTGGGCGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGAGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGA-GCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCTGGGCGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGA-GAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGA-GCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCTGGGCGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGA-GAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCTGGGCGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGAGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCTGGGCGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGAGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCTGGGCGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGAGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTG-CTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacaggtCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCCTAGTGTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACC-AGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTggtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTG-CTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacaggtCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCCTAGTGTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTAC-CAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTggtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCCTAGTGTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGC-TGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCCTAGTGTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCAGG-AGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTG-CTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCCTAGTGTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACC-AGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTG-CTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTAC--CTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCCTAGTGTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCA---GGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTG-CTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTAC--CTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCCTAGTGTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCA---GGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTG-CTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCCTAGTGTCTGGGTGGTGGGGTATGGTACAGCATCCCAACTACCA-GGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTAC-AGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgatgacatcaactgtactatctcaaaagggtgctggcttttgtctagGAGTCTATCCTCACCACCATGGACATCATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACCAGCCTGCAGGCCCAGTTCCTTTTATACCATCCCCAACCCC-AGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGggtaagtattagaaacccaaaatgccctatcctgcgccatcgcttatgttg Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTAC-AGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgatgacatcaactgtactatctcaaaagggtgctggcttttgtctagGAGTCTATCCTCACCACCATGGACATCATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACCAGCCTGCAGGCCCAGTTCCTTTTATACCATCCCCAACCCCAGGGT-ACCCAATGGCCTTACTCATCTGCCTGCTCCGGggtaagtattagaaacccaaaatgccctatcctgcgccatcgcttatgttg Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTAC-AGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgatgacatcaactgtactatctcaaaagggtgctggcttttgtctagGAGTCTATCCTCACCACCATGGACATCATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACcAGCCTGCAGGCCCAGTTCCTTTTATACCATCCCCAACCCCA-GGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaagtattagaaacccaaaatgccctatcctgcgccatcgcttatgttg Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTAC-AGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgatgacatcaactgtactatctcaaaagggtgctggcttttgtctagGAGTCTATCCTCACCACCATGGACATCATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACCAGCCTGCAGGCCCAGTTCCTTTTATACCATCCCCAACC-CCAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaagtattagaaacccaaaatgccctatcctgcgccatcgcttatgttg Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTA-CAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgatgacatcaactgtactatctcaaaagggtgctggcttttgtctagGAGTCTATCCTCACCACCATGGACATCATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACCAGCCTGCAGGCCCAGTTCCTTTTATACCATCCCCAACC-CCAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaagtattagaaacccaaaatgccctatcctgcgccatcgcttatgttg Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTAC-AGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAG--CCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgatgacatcaactgtactatctcaaaagggtgctggcttttgtctagGAGTCTATCCTCACCACCATGGACATCATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACCAGCCTGCAGGCCCAGTTCCTTTTATACCATCCCCAACCCCA---GGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaagtattagaaacccaaaatgccctatcctgcgccatcgcttatgttg Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTAC-AGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAG--CCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgatgacatcaactgtactatctcaaaagggtgctggcttttgtctagGAGTCTATCCTCACCACCATGGACATCATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACCAGCCTGCAGGCCCAGTTCCTTTTATACCATCCCCAACCCCA---GGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaagtattagaaacccaaaatgccctatcctgcgccatcgcttatgttg Alignment from GeneWise GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTAC-AGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgatgacatcaactgtactatctcaaaagggtgctggcttttgtctagGAGTCTATCCTCACCACCATGGACATCATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACCAGCCTGCAGGCCCAGTTCCTTTTATACCATCCCCAACCCCA-GGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaagtattagaaacccaaaatgccctatcctgcgccatcgcttatgttg #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCT-GGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTCGGAATGCTTCTGCCACTGGCCTTTGCAACCACTC-CACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCT-GGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTCGGAATGCTTCTGCCACTGGCCTTTGCAACCACT-CCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTCGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCT-GGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTCGGAATGCTTCTGCCACTGGCCTTTGCAACCACTC-CACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCT-GGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTCGGAATGCTTCTGCCACTGGCCTTTGCAACCACTC-CACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTCGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTCGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTCGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGG-AGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGCAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGC-TGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGG-AGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGCAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGC-TGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGCAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGG-AGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGCAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCT-GGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGG-AGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGCAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCT-GGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGCAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGCAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGCAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagcTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGC-TTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from CESAR cTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagcTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGC-TTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Spaln_nt2Genome CTGCTCTGAAGC-CCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGC-TTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Pairagon CTGCTCTGAAGC-CCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAG-CTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Exonerate_protein2genome CTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG--TTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCT---TACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Exonerate_coding2genome CTGCTCTGAAGCC-CAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG--TTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACCAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCT---TACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from GeneWise AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagctgctctgaagcaccagAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCT-TACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTC-CTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCCTAATTTTAGTATCTGCCTGCATAGTTCGAT-CGGCACGAATTCTTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTaggtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTC-CTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCCTAATTTTAGTATCTGCCTGCATAGTTCGA-TCGGCACGAATTCTTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTaggtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCCTAATTTTAGTATCTGCCTGCATAGTTCGATCGGCACGAATTCTTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCC-TGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCCTAATTTTAGTATCTGCCTGCATAGTTCGA-TCGGCACGAATTCTTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTT-CCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCCTAATTTTAGTATCTGCCTGCATAGTTCGA-TCGGCACGAATTCTTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCCTAATTTTAGTATCTGCCTGCATAGTTCGATCGGCACGAATTCTTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCCTAATTTTAGTATCTGCCTGCATAGTTCGATCGGCACGAATTCTTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCCTAATTTTAGTATCTGCCTGCATAGTTCGATCGGCACGAATTCTTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAG-TTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGCTTAGTGGCACGTATGATCCCCAAAGTGG-GTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTC-GTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGCTTAGTGGCACGTATGATCCCCAAAGTG-GGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGCTTAGTGGCACGTATGATCCCCAAAGTGGGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAG-TTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGCTTAGTGGCACGTATGATCCCCAAAGTGG-GTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAG-TTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGCTTAGTGGCACGTATGATCCCCAAAGTGG-GTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGCTTAGTGGCACGTATGATCCCCAAAGTGGGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Exonerate_coding2genome atgtagacctaacctcactgaatgttttcactgcctcttctctaccacaggcaactgaagtctgtattaaccctgtggaatttaacccagagcttagtggcacgtatgatccccaaagtgggtgggcagcacttgttcgggctgcagatactgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGCTTAGTGGCACGTATGATCCCCAAAGTGGGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTC-CATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCCATGGTACATTCTGGACGAATCACTGGCCATCCA-TTTGCTCAAGGGG---TCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTggtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTC-CATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCCATGGTACATTCTGGACGAATCACTGGCCATCCA-TTTGCTCAAGGGG---TCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTggtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTGCTCAAGGGGTCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTC-CATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCCATGGTACATTCTGGACGAATCACTGGCCATCCATT-TGCTCAAGGG---GTCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCC---AGACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGT-CCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCCATGGTACATTCTGGACGAATCACTGGCCATCCATT-TGCTCAAGGG---GTCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCC---AGACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTGCTCAAGGGGTCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTGCTCAAGGGGTCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATT---CTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgttagaagggagcttctctgctgccgtgttgctttactgtctctagGTCCCTGAGTTGGAGCTGACCCCCCTGGACACACCACAAGCCCTGCCTCTGGCACTAGTCCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTGCTCAAGGGG---TCACGTCAAGGAAGGACATGCAATCACCTCGCTTCAGGATTGCCA---GACCCGGGTGCCATCAGTGgtgagttctaattaacctatccctcttccagactgcaccagcagttatgc #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGA-CTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACCTTACAGGAAATTGGCGGTTCTCCCAGGTTT-ATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from CESAR ACCAACGCCAGA-CTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACCTTACAGGAAATTGGCGGTTCTCCCAGG-TTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagactaATGCCCGAC------CTTACAGGAAATTGGCGGTTCTCCCAGGT-TTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Spaln_nt2Genome ACCAACGCCAGAC-TCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACCTTACAGGAAATTGGCGGTTCTCCCAGGT-TTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Pairagon CAGACCAACGCCAGA-CTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACCTTACAGGAAATTGGCGGTTCTCCCAGGT-TTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACCTTACAGGAAATTGGCGGTTCTCCCAGGTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACCTTACAGGAAATTGGCGGTTCTCCCAGGTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACCTTACAGGAAATTGGCGGTTCTCCCAGGTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGAT-GAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacaggCTGATGGAGCATGAAGATGAACCTGATGTGGATCGAGCCTCTGGAGACTTCCCTCAGCCATGTTT-GGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAggtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGAT-GAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacaggCTGATGGAGCATGAAGATGAACCTGATGTGGATCGAGCCTCTGGAGACTTCCCTCAGCCATG-TTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAggtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATCGAGCCTCTGGAGACTTCCCTCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGAT-GAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATCGAGCCTCTGGAGACTTCCCTCAGCCATGT-TTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGAT-GAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATCGAGCCTCTGGAGACTTCCCTCAGCCATGT-TTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATCGAGCCTCTGGAGACTTCCCTCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATCGAGCCTCTGGAGACTTCCCTCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtggtgaataaggtgggccccagaatactaagtagggcttcctgaacagGCTGATGGAGCATGAAGATGAACCTGATGTGGATCGAGCCTCTGGAGACTTCCCTCAGCCATGTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtgagtattgggagatatcatgattgtacaacttgaaaagggcccggaca #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCC-CACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACCACACACCTTTTCTCCTGGTTTTCCAGG-TAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCC-CACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACCACACACCTTTTCTCCTGGTTTTCCAGGTA-ACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACCACACACCTTTTCTCCTGGTTTTCCAGGTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTC-CCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACCACACACCTTTTCTCCTGGTTTTCCAGG-TAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTC-CCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACCACACACCTTTTCTCCTGGTTTTCCAGGTAA-CTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACCACACACCTTTTCTCCTGGTTTTCCAGGTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACCACACACCTTTTCTCCTGGTTTTCCAGGTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACCACACACCTTTTCTCCTGGTTTTCCAGGTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCG-AGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag tacctattcatgcctcttcagtttttgcttttctttgatttgacttgtagATCCTCATGATCCAGTACCCACAGCAGTCAGCTGGGGGAGATGTCCCTGGAAG-ACACAGCCAATGTGAATGCaggtaggtgccagttttggtatccaaggtctagcatgggttggggctgcttg Alignment from CESAR ATCCTCATGATCCAGTACCCG-AGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag tacctattcatgcctcttcagtttttgcttttctttgatttgacttgtagATCCTCATGATCCAGTACCCACAGCAGTCAGCTGGGGGAGATGTCCCTGGAAG-ACACAGCCAATGTGAATGCaggtaggtgccagttttggtatccaaggtctagcatgggttggggctgcttg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG tacctattcatgcctcttcagtttttgcttttctttgatttgacttgtagATCCTCATGATCCAGTACCCACAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGACACAGCCAATGTGAATGCAGgtaggtgccagttttggtatccaaggtctagcatgggttggggctgcttg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTA-CCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG tacctattcatgcctcttcagtttttgcttttctttgatttgacttgtagATCCTCATGATCCAGTACCCACAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGA-CACAGCCAATGTGAATGCAGgtaggtgccagttttggtatccaaggtctagcatgggttggggctgcttg Alignment from Pairagon ATCCTCATGATCCAGTACCCG-AGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG tacctattcatgcctcttcagtttttgcttttctttgatttgacttgtagATCCTCATGATCCAGTACCCACAGCAGTCAGCTGGGGGAGATGTCCCTGGAAG-ACACAGCCAATGTGAATGCAGgtaggtgccagttttggtatccaaggtctagcatgggttggggctgcttg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG tacctattcatgcctcttcagtttttgcttttctttgatttgacttgtagATCCTCATGATCCAGTACCCACAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGACACAGCCAATGTGAATGCAGgtaggtgccagttttggtatccaaggtctagcatgggttggggctgcttg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG tacctattcatgcctcttcagtttttgcttttctttgatttgacttgtagATCCTCATGATCCAGTACCCACAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGACACAGCCAATGTGAATGCAGgtaggtgccagttttggtatccaaggtctagcatgggttggggctgcttg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGC-- tacctattcatgcctcttcagtttttgcttttctttgatttgacttgtagATCCTCATGATCCAGTACCCACAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGACACAGCCAATGTGAATGCAGgtaggtgccagttttggtatccaaggtctagcatgggttggggctgcttg #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGC-CTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagacCTGGTCAAAAGCCGTCCTCTATTGGTTGGATGCCAAGTTACACATGC-CTCTAGTGTTGACCTGAATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from CESAR acCTTGTCAAAAGCCGC-CTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagacCTGGTCAAAAGCCGTCCTCTATTGGTTGGATGCCAAGTTACACATG-CCTCTAGTGTTGACCTGAATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Spaln_aa2Genome GTC------AAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCCTCTATTGGTTGGATGCCAAGTTACACATGCC-TCTAGTGTTGACCTGAATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCG-CCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCCTCTATTGGTTGGATGCCAAGTTACACATGC-CTCTAGTGTTGACCTGAATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Pairagon ACCTTGTCAAAAGCCG-CCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCCTCTATTGGTTGGATGCCAAGTTACACATGC-CTCTAGTGTTGACCTGAATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Exonerate_protein2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCCTCTATTGGTTGGATGCCAAGTTACACATGCCTCTAGTGTTGACCTGAATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from Exonerate_coding2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCCTCTATTGGTTGGATGCCAAGTTACACATGCCTCTAGTGTTGACCTGAATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc Alignment from GeneWise ---------AAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG actgcataagtgtggggagaaagaagctcatttgttcttcctcggcacagACCTGGTCAAAAGCCGTCCTCTATTGGTTGGATGCCAAGTTACACATGCC-TCTAGTGTTGACCTGAATGGTCAAGATCGCAGGATTGTGCTCAAATCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtagagtgtatgcaatatgtgcatgtatcagcaagtatagtaaaaagagc #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtgatgtcacttcaggtctttatcactgtcatggctgccctcccagGGGGCTATCCAAGGTCCTCGAAGAATTTGTGGCAGGAATGGCATTAGGATTAAAAGCAC-AATTGGTGGAGCTGTTggtaagttgcaacagaactagtgatgcaagtcataccagtggggaatgggc Alignment from CESAR GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg gacagtgatgtcacttcaggtctttatcactgtcatggctgccctcccagGGGGCTATCCAAGGTCCTCGAAGAATTTGTGGCAGGAATGGCATTAGGATTAAAAGCA-CAATTGGTGGAGCTGTTggtaagttgcaacagaactagtgatgcaagtcataccagtggggaatgggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCA---CTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtctttatcactgtcatggctgccctcccagGGGGCTATCCAAGGTCCTcGAAGAATTTGTGGCAGGAATGGCATTAGGATTAAAAGCACAATTGGTGGAGCTGTTGGTAAgttgcaacagaactagtgatgcaagtcataccagtggggaatgggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtctttatcactgtcatggctgccctcccagGGGGCTATCCAAGGTCCTCGAAGAATTTGTGGCAGGAATGGCATTAGGATTAAAAGCAC-AATTGGTGGAGCTGTTGgtaagttgcaacagaactagtgatgcaagtcataccagtggggaatgggc Alignment from Pairagon GGGGCTATCCAGGGTCCT-GAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtctttatcactgtcatggctgccctcccagGGGGCTATCCAAGGTCCTCGAAGAATTTGTGGCAGGAATGGCATTAGGATTAAAAGCAC-AATTGGTGGAGCTGTTGgtaagttgcaacagaactagtgatgcaagtcataccagtggggaatgggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtctttatcactgtcatggctgccctcccagGGGGCTATCCAAGGTCCTCGAAGAATTTGTGGCAGGAATGGCATTAGGATTAAAAGCACAATTGGTGGAGCTGTTGgtaagttgcaacagaactagtgatgcaagtcataccagtggggaatgggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtctttatcactgtcatggctgccctcccagGGGGCTATCCAAGGTCCTCGAAGAATTTGTGGCAGGAATGGCATTAGGATTAAAAGCACAATTGGTGGAGCTGTTGgtaagttgcaacagaactagtgatgcaagtcataccagtggggaatgggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG gacagtgatgtcacttcaggtctttatcactgtcatggctgccctcccagGGGGCTATCCAAGGTCCTCGAAGAATTTGTGGCAGGAATGGCATTAGGATTAAAAGCACAATTGGTGGAGCTGTTGgtaagttgcaacagaactagtgatgcaagtcataccagtggggaatgggc #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttatctgttagtaaatctcctgataccaactgtttctctttctttccagctTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATC-GAAACAGAACGTATCAGAAATCAAAATTGAAggtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttatctgttagtaaatctcctgataccaactgtttctctttctttccagctTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGAT-CGAAACAGAACGTATCAGAAATCAAAATTGAAggtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATCGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATC-GAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCA-GAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATC-GAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATCGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATCGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAA--------------------------------------------------- gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCACGAACTATCATGTTTAAAAATTCTCATCCAGGATCGAAACAGAACGTATCAGAAATCAAAATTGAAGGTGAACATATCTATTTCCTGTATTTAGGATTAACTAAATTCATAAGGCAG #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagtccctactccctgcataaaaacctcacttcctttacccacccataggtAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTAC-CATAGTACCTTCTTCTagtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagtccctactccctgcataaaaacctcacttcctttacccacccataggtAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTA-CCATAGTACCTTCTTCTagtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTcCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACC-ATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTAC-CATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTAC-CATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from GeneWise GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagggGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCCACGGAGGGAGCAGGCAGTGAATGCTCTGT-CTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagggGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCCACGGAGGGAGCAGGCAGTGAATGCTCTG-TCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCCACGGAGGGAGCAGGCAGTGAATGCTCTGTCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCG-CGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCCACGGAGGGAGCAGGCAGTGAATGCTCTGT-CTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAG-CCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCCACGGAGGGAGCAGGCAGTGAATGCTCTGT-CTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCCACGGAGGGAGCAGGCAGTGAATGCTCTGTCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Exonerate_coding2genome GGGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacaGGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCCACGGAGGGAGCAGGCAGTGAATGCTCTGTCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from GeneWise GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCCACGGAGGGAGCAGGCAGTGAATGCTCTGTCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga #### Wdr74_ID2313_3 --> 0 - 2 Original Alignment ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACA-TTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATgg tcttcattcttccctcatcttactcagcattctttaccctcacctgatagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAAGCCAGAGATACTGCCCAGGTGGGG-GGGGACATTCCGAGGTCTCACCCAGGTGGATgggtgagggttactgatagtgtagcctgagttaactaaagtgtagtgcactc Alignment from CESAR ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACA-TTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATgg tcttcattcttccctcatcttactcagcattctttaccctcacctgatagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAAGCCAGAGATACTGCCCAGGTGGG-GGGGGACATTCCGAGGTCTCACCCAGGTGGATgggtgagggttactgatagtgtagcctgagttaactaaagtgtagtgcactc Alignment from Spaln_aa2Genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagcattctttaccctcacctgatagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAAGCCAGAGATACTGCCCAGGTGGGGGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtgagggttactgatagtgtagcctgagttaactaaagtgtagtgcactc Alignment from Spaln_nt2Genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACA-TTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagcattctttaccctcacctgatagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAAGCCAGAGATACTGCCCAGGTGGGG-GGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtgagggttactgatagtgtagcctgagttaactaaagtgtagtgcactc Alignment from Pairagon ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACA-TTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagcattctttaccctcacctgatagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAAGCCAGAGATACTGCCCAGGTGGGG-GGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtgagggttactgatagtgtagcctgagttaactaaagtgtagtgcactc Alignment from Exonerate_protein2genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagcattctttaccctcacctgatagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAAGCCAGAGATACTGCCCAGGTGGGGGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtgagggttactgatagtgtagcctgagttaactaaagtgtagtgcactc Alignment from Exonerate_coding2genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagcattctttaccctcacctgatagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAAGCCAGAGATACTGCCCAGGTGGGGGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtgagggttactgatagtgtagcctgagttaactaaagtgtagtgcactc Alignment from GeneWise ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagcattctttaccctcacctgatagGTACTGGTGGGCTGTGCAGACAGAACTGTAAGGTATTTTAATGCAAAGGAAGGCACACTTCCTAAGCCAGAGATACTGCCCAGGTGGGGGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtgagggttactgatagtgtagcctgagttaactaaagtgtagtgcactc #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAG-TGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcaggcAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACCTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCC-GGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAG-TGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcaggcAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACCTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGC-CGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACCTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAG-TGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACCTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGC-CGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCA-GTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACCTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGC-CGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAG-TGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGC--TTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACCTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCG---GACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAG-TGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGC--TTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACCTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCG---GACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTG-CAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACCTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCG-GACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGT-GACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagggGGGCAAGGCTGGCTGTGGGGTGGATGCAGTCGACAATGCAGGCTTTGGAGAGGCAATTTCCA-GCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGT-GACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagggGGGCAAGGCTGGCTGTGGGGTGGATGCAGTCGACAATGCAGGCTTTGGAGAGGCAATTT-CCAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTCGACAATGCAGGCTTTGGAGAGGCAATTTCCAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGT-GACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTCGACAATGCAGGCTTTGGAGAGGCAATTTCC-AGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGT-GACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTCGACAATGCAGGCTTTGGAGAGGCAATTTCC-AGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTCGACAATGCAGGCTTTGGAGAGGCAATTTCCAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTCGACAATGCAGGCTTTGGAGAGGCAATTTCCAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTCGACAATGCAGGCTTTGGAGAGGCAATTTCCAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATG-GCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGCGCCTATGGCACCTCCATAGCATCCCAAGGGAAGG-CATAGTGCACAAAGAGgtagcctggtccttgtctcttttgtttcagCTACACCGTTTTGTGTCTGT Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATG-GCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGCGCCTATGGCACCTCCATAGCATCCCAAGGGAAG-GCATAGTGCACAAAGAGgtagcctgccactctgcttctctctgccagCTACACCGTTTTGTGTCTGT Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATG-GCCTATGGCACCTCCATAGCATCCCAAGGGAAG GACATAGTGCACAAAGAGCT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGcGCCTATGGCACCTCCATAGCATCCCAAGGGAAGgcatagtgcacaaagaggtagcctggtccttgtctcttttgtttcag------------------CT Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATG-GCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAG------------------------------AGCTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGCGCCTATGGCACCTCCATAGCATCCCAAGGGAAGG-CATAGTGCACAAAGAGGTAGCCTGGTCCTTGTCTCTTTTGTTTCAGCTACACCGTTTTGTGTCTGT Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATG-GCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGCGCCTATGGCACCTCCATAGCATCCCAAGGGAAGG-CATAGTGCACAAAGAGgtagcctggtccttgtctcttttgtttcagCTACACCGTTTTGTGTCTGT Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGCGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGCATAGTGCACAAAGAGgtagcctggtccttgtctcttttgtttcagCTACACCGTTTTGTGTCTGT Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGC---CTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATG--CGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGC-ATAGTGCACAAAGAGgtagcctggtccttgtctcttttgtttcagCTACACCGTTTTGTGTCTGT Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG------------------------------CTGCACCGTTTTGTGTCCGT gaacacgcactgaggtttttaa---TTGCATTTTGTTTCCTCTCGCAAAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGCGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGCATAGTGCACAAAGAGGTAGCCTGGTCCTTGTCTCTTTTGTTTCAGCTACACCGTTTTGTGTCTGT #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTG-TTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from CESAR GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTG-TTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTAcGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGT-TATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTG-TTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Pairagon GTGTTTGTGGTGCTG-GTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTG-TTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG atgggctgtacctactctgactgctatcgcctgacatttttgttcttcagGTGTTTGTAGTGCTACGTGATTGTGCTGCCTGGTTCCATTGTAGCCATTGTTATCTGTGTGTTCTGCCGCTCATCCTCCGAACTTACTCAGTACCTCAGCTCTGCTGGCACTTTCTCTATAGTCACTGGAATCTCATTCTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCACGAATATCCACCTCAGgtgagtactccacagtgcaagcttcaccagagacaatgcttgcctgccat #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACT-GTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ataacacatcttccactataattgtggtctcacccctttctctggtctagGGCAGGAATGAAATTAGCACACGTATCAATCTGCAAGAAATGCATTTATC-CAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAaggtgcatctgggttgtgttctgttcctcactttacttaaggcacattgagt Alignment from CESAR GGCAGGAATGACATTGCTACT-GTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ataacacatcttccactataattgtggtctcacccctttctctggtctagGGCAGGAATGAAATTAGCACACGTATCAATCTGCAAGAAATGCATTTATC-CAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAaggtgcatctgggttgtgttctgttcctcactttacttaaggcacattgagt Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttccactataattgtggtctcacccctttctctggtctagGGCAGGAATGAAATTAGCACACGTATCAATCTGCAAGAAATGCATTTATCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgcatctgggttgtgttctgttcctcactttacttaaggcacattgagt Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACT-GTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttccactataattgtggtctcacccctttctctggtctagGGCAGGAATGAAATTAGCACACGTATCAATCTGCAAGAAATGCATTTAT-CCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgcatctgggttgtgttctgttcctcactttacttaaggcacattgagt Alignment from Pairagon GGCAGGAATGACATTGCTAC-TGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttccactataattgtggtctcacccctttctctggtctagGGCAGGAATGAAATTAGCACACGTATCAATCTGCAAGAAATGCATTTAT-CCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgcatctgggttgtgttctgttcctcactttacttaaggcacattgagt Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttccactataattgtggtctcacccctttctctggtctagGGCAGGAATGAAATTAGCACACGTATCAATCTGCAAGAAATGCATTTATCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgcatctgggttgtgttctgttcctcactttacttaaggcacattgagt Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ataacacatcttccactataattgtggtctcacccctttctctggtctagGGCAGGAATGAAATTAGCACACGTATCAATCTGCAAGAAATGCATTTATCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGgtgcatctgggttgtgttctgttcctcactttacttaaggcacattgagt Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAGGTGTGTGCTGAAGATGGATCATCACTGCC ataacacatcttccactataattgtggtctcacccctttctctggtctagGGCAGGAATGAAATTAGCACACGTATCAATCTGCAAGAAATGCATTTATCCAAGCCAGCTCGCACACACCACTGTAGCATCTGTAAAAGGTGCATCTGGGTTGTG---------TTCTgttcctcactttacttaaggc #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCC-CTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagtTCTGTGGCCCTGGCTCTGGGTGCCCCTTACCATGTGGCACGCTGTCCTGATCAGTC-GGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCC-CTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagtTCTGTGGCCCTGGCTCTGGGTGCCCCTTACCATGTGGCACGCTGTCCTGATCAGTC-GGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCC-TAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCCTTACCATGTGGCACGCTGTCCTGATCAGTC-GGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTG-CCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCCTTACCATGTGGCACGCTGTCCTGATCAGTC-GGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGC-CCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCCTGTACGGAGGAGCCCCGGATCCGGCTAC-AAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagtagaggggggggtgcttcatcgagaaactgacaaccttttgtttt Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGC-CCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCCTGTACGGAGGAGCCCCGGATCCGGCTAC-AAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagtagaggggggggtgcttcatcgagaaactgacattaaattttctt Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCCTGTACGGAGGAGCCCCGGATCCGGCTACAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaaccttttgtttt Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCC-TGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCCTGTACGGAGGAGCCCCGGATCCGGCTACA-AAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaaccttttgtttt Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAG-CCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCCTGTACGGAGGAGCCCCGGATCCGGCTACA-AAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaaccttttgtttt Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCCTGTACGGAGGAGCCCCGGATCCGGCTACAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaaccttttgtttt Alignment from Exonerate_coding2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAG-CCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCCTGTACGGAGGAGCCCCGGATCCGGCTACA-AAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaaccttttgtttt Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacatgggtccatcttagctcttgttgcttattgcattaaagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCCTGTACGGAGGAGCCCCGGATCCGGCTACAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagtagaggggggggtgcttcatcgagaaactgacaaccttttgtttt #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGT-GGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTCGCAAACAGCTTCTGCTCACATTGCTGCTCATTCA-GGTACCCCGCTCCTCCATGGGCGCCACAggtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from CESAR CGGAGCTGCAGCAACTGT-GGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTCGCAAACAGCTTCTGCTCACATTGCTGCTCATTCA-GGTACCCCGCTCCTCCATGGGCGCCACAggtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTCGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGG-AACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTCGCAAACAGCTTCTGCTCACATTGCTGCTCATTC-AGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Pairagon CGGAGCTGCAGCAACTGT-GGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTCGCAAACAGCTTCTGCTCACATTGCTGCTCATTC-AGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTCGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTCGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTCGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATC-ACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gttttgttgccctccacaggccttcttacggattctttttgtgtctccagagCGTCGACGGTTCCCAGGACACCACAACATCCACTCTCCGAGCCCTGGAGATTGTAAGCTCTCCAGGCG-AGTGGACTTTGAGGATGCAGCCAAACTTAAGCCTTCAggtgagtgtgtgtgggtgttctttacgggggagaggtaagtgcggctccac Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATC-ACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg gttttgttgccctccacaggccttcttacggattctttttgtgtctccagagCGTCGACGGTTCCCAGGACACCACAACATCCACTCTCCGAGCCCTGGAGATTGTAAGCTCTCCAGGC-GAGTGGACTTTGAGGATGCAGCCAAACTTAAGCCTTCAggtgagtgtgtgtgggtgttctttacgggggagaggtaagtgcggctccac Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCA- gttttgttgccctccacaggccttcttacggattctttttgtgtctccagAGCGTCGACGGTTCCCAGGACACCACAACATCCACTCTCCGAGCCCTGGAGATTGTAAGCTCTCCAGGCGAGTGGACTTTGAGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtgggtgttctttacgggggagaggtaagtgcggctccac Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACAT-CACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gttttgttgccctccacaggccttcttacggattctttttgtgtctccagAGCGTCGACGGTTCCCAGGACACCACAACATCCACTCTCCGAGCCCTGGAGATTGTAAGCTCTCCAGGCG-AGTGGACTTTGAGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtgggtgttctttacgggggagaggtaagtgcggctccac Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACAT-CACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gttttgttgccctccacaggccttcttacggattctttttgtgtctccagAGCGTCGACGGTTCCCAGGACACCACAACATCCACTCTCCGAGCCCTGGAGATTGTAAGCTCTCCAGGCG-AGTGGACTTTGAGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtgggtgttctttacgggggagaggtaagtgcggctccac Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gttttgttgccctccacaggccttcttacggattctttttgtgtctccagAGCGTCGACGGTTCCCAGGACACCACAACATCCACTCTCCGAGCCCTGGAGATTGTAAGCTCTCCAGGCGAGTGGACTTTGAGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtgggtgttctttacgggggagaggtaagtgcggctccac Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATC-ACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gttttgttgccctccacaggccttcttacggattctttttgtgtctccagAGCGTCGACGGTTCCCAGGACACCACAACATCCACTCTCCGAGCCCTGGAGATTGTAAGCTCTCCA-GGCGAGTGGACTTTGAGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtgggtgttctttacgggggagaggtaagtgcggctccac Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG gttttgttgccctccacaggccttcttacggattctttttgtgtctccagAGCGTCGACGGTTCCCAGGACACCACAACATCCACTCTCCGAGCCCTGGAGATTGTAAGCTCTCCAGGCGAGTGGACTTTGAGGATGCAGCCAAACTTAAGCCTTCAGgtgagtgtgtgtgggtgttctttacgggggagaggtaagtgcggctccac #### Zp1_ID3063_9 --> 1 - 0 Original Alignment gTGTCCTTTCAAGGGTGACAACTACAGA-ACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagaTGTCCTTTCAAGGGTGTCAATTATAGACACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGT-CCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from CESAR gTGTCCTTTCAAGGGTGACAACTACAGA-ACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagaTGTCCTTTCAAGGGTGTCAATTATAGACACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGT-CCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Spaln_aa2Genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGACACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTCCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Spaln_nt2Genome GTGTCCTTTCAAGGGTGACAACTACAGA-ACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGACACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGT-CCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Pairagon GTGTCCTTTCAAGGGTGACAACTACAGA-ACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGACACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGT-CCATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Exonerate_protein2genome GTGTCCTTTCAAGGGTGACAACTACAGA-ACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGG--TCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGACACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTC---CATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from Exonerate_coding2genome GTGTCCTTTCAAGGGTGACAACTACAGA-ACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGG--TCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGACACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTC---CATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag Alignment from GeneWise GTGTCCTTTCAAGGGTGACAACTACAGA-ACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG actgcagctatgggtccttgaaggggctctcactattgctcttctcacagATGTCCTTTCAAGGGTGTCAATTATAGACACACAAGTAGTGGCTGCAGACCGGGAAGCAATTCCCTTCTGGTC-CATTCTCAGCATTTCACTATTACCACCTTCATGCTTTTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgaggaacacttctttaaaagcccttcttctttcctccaaccccagaag #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTC-CTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCCTGCAGAAAACT---GCTGGCCTGGTTCTGGTATTACACC-GTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATgcgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTC-CTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCCTGCAGAAAACT---GCTGGCCTGGTTCTGGTATTACAC-CGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATgcgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGG---CTTCCTGCAGAAAACTGCTGGCCTGGTTCTGGTATTACACCGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACT-CCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCCTGCAGAAAACTG---CTGGCCTGGTTCTGGTATTACACC-GTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGAC-TCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCCTGCAGAAAACTG---CTGGCCTGGTTCTGGTATTACACC-GTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGG---CTTCCTGCAGAAAACTGCTGGCCTGGTTCTGGTATTACACCGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCCTGCAGAAAAC--TGCTGGCCTGGTTCTGGTATTACACCG-TGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTC---CTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCCTGCAGAAAACTGCTGGCCTGGTTCTGGTATTACA------CCGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta #### Zp1_ID3065_7 --> 1 - 1 Original Alignment gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCA-TCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg tggtgcatgcaaacagaataactgaaaagtcccttttttttttccaaaaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCACTCTATCTCTCCGCCCCACCCGCCTGCCCCTGTAACAC-ATCTGGAGCACTCAGGCTGCAATTGAAGATTGCCATGggtgagtggctctagcttgggcggtaccttccaaccttgcagcttgaagta Alignment from CESAR gCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCA-TCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGg tggtgcatgcaaacagaataactgaaaagtcccttttttttttccaaaaggCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCACTCTATCTCTCCGCCCCACCCGCCTGCCCCTGTAACAC-ATCTGGAGCACTCAGGCTGCAATTGAAGATTGCCATGggtgagtggctctagcttgggcggtaccttccaaccttgcagcttgaagta Alignment from Spaln_aa2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcatgcaaacagaataactgaaaagtcccttttttttttccaaaagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCACTCTATCTCTCCGCCCCACCCGCCTGCCCCTGTAACACATCTGGAGCACTCAGGCTGCAATTGAAGATTGCCATGGgtgagtggctctagcttgggcggtaccttccaaccttgcagcttgaagta Alignment from Spaln_nt2Genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCA-TCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcatgcaaacagaataactgaaaagtcccttttttttttccaaaagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCACTCTATCTCTCCGCCCCACCCGCCTGCCCCTGTAACAC-ATCTGGAGCACTCAGGCTGCAATTGAAGATTGCCATGGgtgagtggctctagcttgggcggtaccttccaaccttgcagcttgaagta Alignment from Pairagon GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCA-TCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcatgcaaacagaataactgaaaagtcccttttttttttccaaaagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCACTCTATCTCTCCGCCCCACCCGCCTGCCCCTGTAACAC-ATCTGGAGCACTCAGGCTGCAATTGAAGATTGCCATGGgtgagtggctctagcttgggcggtaccttccaaccttgcagcttgaagta Alignment from Exonerate_protein2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcatgcaaacagaataactgaaaagtcccttttttttttccaaaagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCACTCTATCTCTCCGCCCCACCCGCCTGCCCCTGTAACACATCTGGAGCACTCAGGCTGCAATTGAAGATTGCCATGGgtgagtggctctagcttgggcggtaccttccaaccttgcagcttgaagta Alignment from Exonerate_coding2genome GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcatgcaaacagaataactgaaaagtcccttttttttttccaaaagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCACTCTATCTCTCCGCCCCACCCGCCTGCCCCTGTAACACATCTGGAGCACTCAGGCTGCAATTGAAGATTGCCATGGgtgagtggctctagcttgggcggtaccttccaaccttgcagcttgaagta Alignment from GeneWise GCTTCATGTTCGCTGCATCTTCAATGCTAGCGATTTCCTGCCCATCCAGGCATCTATCTTCTCACCCCAACCACCTGCCCCTGTGACTCAATCTGGACCCCTGAGGCTGGAGCTGAGGATTGCCACGG tggtgcatgcaaacagaataactgaaaagtcccttttttttttccaaaagGCTTCATGTTCGCTGCATCTTCAATACTAGTGATTTCCTCCCCCTACAGGCACTCTATCTCTCCGCCCCACCCGCCTGCCCCTGTAACACATCTGGAGCACTCAGGCTGCAATTGAAGATTGCCATGGgtgagtggctctagcttgggcggtaccttccaaccttgcagcttgaagta ####