# Data for manuscript
# A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae)
# Martin Pippel, David Jebb, Franziska Patzold, Sylke Winkler, Gene Myers, Michael Hiller, Anna K. Hundsdoerfer 



# pairwise alignment between Bombyx and Hyles (maf format)
GenomeAlignment.HLbomMor3.HLhylVes1.maf.gz
# pairwise alignment between Manduca and Hyles (maf format)
GenomeAlignment.HLmanSex1.HLhylVes1.maf.gz

# RNA-seq mappings from related Hyles species
# Lenient and strict mapping BAM files
# Strict -> used for hint generation for Augustus and unsupervised training of genemark-ES
# Lenient -> used for transcriptome assembly to maximize numebr of assembled transcripts
HLhylVes1.lenient_mapping.sorted.bam
HLhylVes1.strict_mapping.sorted.bam

# final gene annotation (bed 12 format)
Hyles_HLhylVes1.geneAnnotation.bed

# amino acid (aa) and coding (cds) sequences of the annotated genes (gzipped fasta format)
HLhylVes1.aa.fasta.gz
HLhylVes1.cds.fasta.gz

# Hyles genome sequence (fasta format)
Hyles_HLhylVes1.genome.fa

# BUSCO output files for Hyles (HLhylVes1), Manduca (HLmanSex1) and Bombyx (HLbomMor1)
# The text files containing pertinent info are full_table*tsv and the short_summary*txt files
busco_reports/