Data for the manuscript
"RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements"
by Osipova, Hecker, and Hiller 2019.


The directory contains
- mulipleAliWithRepeatFiller.maf.gz		           multiple alignment of human and 20 other mammals, applying RepeatFiller to the alignment chains
- mulipleAliWithoutRepeatFiller.maf.gz		           multiple alignment of human and 20 other mammals, WITHOUT applying RepeatFiller to the alignment chains
- PhastConsConservedElements.withRepeatFiller.bed.gz       PhastCons conserved elements detected in the alignment generated with RepeatFiller
- PhastConsConservedElements.withoutRepeatFiller.bed.gz    PhastCons conserved elements detected in the alignment generated WITHOUT RepeatFiller
- tree.mod					           phylogenetic tree of the 21 mammals with branch lengths representing substitutions per neutral site