This track displays the repeat annotation from repeatModeller and repeatMasker. Repeats were first modelled and then masked using the tegu-specific repeat library. The program outputs a detailed annotation of the repeats that are present in the genome, as well as a modified version of the genome in which all the annotated repeats have been masked.
In fulll display mode, this track displays up to ten different classes of repeats:
The level of color shading in the graphical display reflects the amount of base mismatch, base deletion, and base insertion associated with a repeat element. The higher the combined number of these, the lighter the shading. A "?" at the end of the "Family" or "Class" (for example, DNA?) signifies that the curator was unsure of the classification.
For details on repeat annotation of the tegu genome, see Roscito et al. 2018.
For any inquiries about the data, please contact hiller@mpi-cbg.de